RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 TYMSOSQ8TAI1 123 aa5.49□□□□□ -1.53
LDLR-210ENST00000559340 CLEC2BQ92478 149 aa5.49□□□□□ -1.53
LDLR-210ENST00000559340 F8WEM9 126 aa5.48□□□□□ -1.53
LDLR-210ENST00000559340 TAX1BP3O14907 124 aa5.48□□□□□ -1.53
LDLR-210ENST00000559340 FABP2P12104 132 aa5.48□□□□□ -1.53
LDLR-210ENST00000559340 KRTAP10-8P60410 259 aa5.48□□□□□ -1.53
LDLR-210ENST00000559340 SSBP3-AS1Q7Z2R9 100 aa5.48□□□□□ -1.53
LDLR-210ENST00000559340 FAM218AQ96MZ4 157 aa5.48□□□□□ -1.53
LDLR-210ENST00000559340 ANAPC11Q9NYG5 84 aa5.48□□□□□ -1.53
LDLR-210ENST00000559340 ORMDL1Q9P0S3 153 aa5.48□□□□□ -1.53
LDLR-210ENST00000559340 LST1O00453 97 aa5.47□□□□□ -1.53
LDLR-210ENST00000559340 C4orf48Q5BLP8 95 aa5.47□□□□□ -1.53
LDLR-210ENST00000559340 Q8N377 158 aa5.47□□□□□ -1.53
LDLR-210ENST00000559340 A0A087X002 238 aa5.46□□□□□ -1.54
LDLR-210ENST00000559340 IGLV9-49A0A0B4J1Y8 123 aa5.46□□□□□ -1.54
LDLR-210ENST00000559340 TMEM256-PLSCR3K7ERE1 68 aa5.46□□□□□ -1.54
LDLR-210ENST00000559340 LINC01547P58512 204 aaPredicted RBP5.46□□□□□ -1.54
LDLR-210ENST00000559340 C9orf153Q5TBE3 101 aa5.46□□□□□ -1.54
LDLR-210ENST00000559340 NAA38Q9BRA0 125 aaKnown RBP5.46□□□□□ -1.54
LDLR-210ENST00000559340 A0A1W2PPM0 123 aa5.45□□□□□ -1.54
LDLR-210ENST00000559340 SPAG11AQ6PDA7 123 aa5.45□□□□□ -1.54
LDLR-210ENST00000559340 Q8NBF4 154 aa5.45□□□□□ -1.54
LDLR-210ENST00000559340 TCL1BO95988 128 aa5.44□□□□□ -1.54
LDLR-210ENST00000559340 MOBPQ13875 183 aa5.44□□□□□ -1.54
LDLR-210ENST00000559340 KRTAP13-2Q52LG2 175 aa5.44□□□□□ -1.54
LDLR-210ENST00000559340 C3orf22Q8N5N4 141 aa5.44□□□□□ -1.54
LDLR-210ENST00000559340 FAT3Q8TDW7 4589 aa5.44□□□□□ -1.54
LDLR-210ENST00000559340 MT1HL1P0DM35 61 aa5.43□□□□□ -1.54
LDLR-210ENST00000559340 UBE2V1Q13404 147 aa5.43□□□□□ -1.54
LDLR-210ENST00000559340 Q6JHZ5 121 aa5.43□□□□□ -1.54
LDLR-210ENST00000559340 SMIM29Q86T20 159 aa5.43□□□□□ -1.54
LDLR-210ENST00000559340 LINC00304Q8N9R0 145 aa5.43□□□□□ -1.54
LDLR-210ENST00000559340 BAALC-AS2P0C853 105 aa5.42□□□□□ -1.54
LDLR-210ENST00000559340 NDUFV3P56181 108 aaKnown RBP5.42□□□□□ -1.54
LDLR-210ENST00000559340 SPCS1Q9Y6A9 102 aa5.41□□□□□ -1.54
LDLR-210ENST00000559340 LRP1Q07954 4544 aaKnown RBP5.41□□□□□ -1.54
LDLR-210ENST00000559340 IGLV8-61A0A075B6I0 122 aa5.4□□□□□ -1.54
LDLR-210ENST00000559340 SPINK1P00995 79 aa5.4□□□□□ -1.54
LDLR-210ENST00000559340 CD164Q04900 197 aa5.4□□□□□ -1.54
LDLR-210ENST00000559340 GTF2H5Q6ZYL4 71 aa5.4□□□□□ -1.54
LDLR-210ENST00000559340 C9JAW5 83 aa5.39□□□□□ -1.55
LDLR-210ENST00000559340 H3BMG7 143 aa5.39□□□□□ -1.55
LDLR-210ENST00000559340 ANKRD29Q8N6D5 301 aa5.38□□□□□ -1.55
LDLR-210ENST00000559340 JMJD7-PLA2G4BH0Y9G9 81 aa5.37□□□□□ -1.55
LDLR-210ENST00000559340 H3BT86 120 aa5.37□□□□□ -1.55
LDLR-210ENST00000559340 RPS29P62273 56 aaKnown RBP5.37□□□□□ -1.55
LDLR-210ENST00000559340 RBM3P98179 157 aaKnown RBP5.37□□□□□ -1.55
LDLR-210ENST00000559340 K7EP34 96 aa5.36□□□□□ -1.55
LDLR-210ENST00000559340 C21orf62-AS1Q17RA5 79 aa5.36□□□□□ -1.55
LDLR-210ENST00000559340 LIMD2Q9BT23 127 aa5.36□□□□□ -1.55
LDLR-210ENST00000559340 TNXBP22105 4242 aa5.35□□□□□ -1.55
LDLR-210ENST00000559340 HMCN2Q8NDA2 5059 aa5.35□□□□□ -1.55
LDLR-210ENST00000559340 IGFL1Q6UW32 110 aa5.35□□□□□ -1.55
LDLR-210ENST00000559340 DSCR8Q96T75 97 aa5.35□□□□□ -1.55
LDLR-210ENST00000559340 PDE6GP18545 87 aa5.34□□□□□ -1.55
LDLR-210ENST00000559340 TEN1Q86WV5 123 aa5.34□□□□□ -1.55
LDLR-210ENST00000559340 HRCT1Q6UXD1 115 aa5.33□□□□□ -1.56
LDLR-210ENST00000559340 SMCPP49901 116 aaPredicted RBP5.32□□□□□ -1.56
LDLR-210ENST00000559340 Q6Q795 121 aa5.32□□□□□ -1.56
LDLR-210ENST00000559340 UBR4Q5T4S7 5183 aa5.32□□□□□ -1.56
LDLR-210ENST00000559340 TRBV7-7A0A0K0K1E9 115 aa5.31□□□□□ -1.56
LDLR-210ENST00000559340 F8W1H4 67 aa5.31□□□□□ -1.56
LDLR-210ENST00000559340 Q5XG85 94 aa5.31□□□□□ -1.56
LDLR-210ENST00000559340 SS18L2Q9UHA2 77 aa5.31□□□□□ -1.56
LDLR-210ENST00000559340 TRBV7-4A0A0J9YYF1 115 aa5.3□□□□□ -1.56
LDLR-210ENST00000559340 A0A1B0GV72 72 aa5.3□□□□□ -1.56
LDLR-210ENST00000559340 CCKP06307 115 aa5.3□□□□□ -1.56
LDLR-210ENST00000559340 LOC110117498A0A087WWA1 95 aa5.29□□□□□ -1.56
LDLR-210ENST00000559340 A0A0G2JQZ4 141 aa5.29□□□□□ -1.56
LDLR-210ENST00000559340 A0A1B0GW54 56 aa5.29□□□□□ -1.56
LDLR-210ENST00000559340 MTURNQ8N3F0 131 aa5.29□□□□□ -1.56
LDLR-210ENST00000559340 LCE2AQ5TA79 106 aaPredicted RBP5.28□□□□□ -1.56
LDLR-210ENST00000559340 FP248Q71RG6 208 aaPredicted RBP5.28□□□□□ -1.56
LDLR-210ENST00000559340 OBSCN-AS1Q96MR7 158 aa5.28□□□□□ -1.56
LDLR-210ENST00000559340 VPS25Q9BRG1 176 aa5.28□□□□□ -1.56
LDLR-210ENST00000559340 A0A1W2PNM2 257 aa5.27□□□□□ -1.57
LDLR-210ENST00000559340 ASB16-AS1Q495Z4 193 aa5.27□□□□□ -1.57
LDLR-210ENST00000559340 PRO0461Q9UI25 63 aa5.27□□□□□ -1.57
LDLR-210ENST00000559340 PRR4Q16378 134 aa5.26□□□□□ -1.57
LDLR-210ENST00000559340 Q6ZQT0 140 aa5.26□□□□□ -1.57
LDLR-210ENST00000559340 C14orf132Q9NPU4 83 aa5.26□□□□□ -1.57
LDLR-210ENST00000559340 A0A087WSZ3 146 aa5.25□□□□□ -1.57
LDLR-210ENST00000559340 A0A1B0GV90 55 aa5.24□□□□□ -1.57
LDLR-210ENST00000559340 IGLV7-46A0A075B6I9 117 aa5.23□□□□□ -1.57
LDLR-210ENST00000559340 RETNLBQ9BQ08 111 aa5.23□□□□□ -1.57
LDLR-210ENST00000559340 C1orf195Q5TG92 126 aa5.22□□□□□ -1.57
LDLR-210ENST00000559340 ETDBQ3ZM63 59 aa5.21□□□□□ -1.58
LDLR-210ENST00000559340 J3KT08 172 aa5.18□□□□□ -1.58
LDLR-210ENST00000559340 NREPQ16612 68 aa5.18□□□□□ -1.58
LDLR-210ENST00000559340 TPRXLQ17RH7 258 aa5.17□□□□□ -1.58
LDLR-210ENST00000559340 IGKV4-1P06312 121 aa5.16□□□□□ -1.58
LDLR-210ENST00000559340 PCP4P48539 62 aa5.16□□□□□ -1.58
LDLR-210ENST00000559340 LINC00472Q9H8W2 130 aa5.16□□□□□ -1.58
LDLR-210ENST00000559340 NDUFB1O75438 58 aa5.15□□□□□ -1.59
LDLR-210ENST00000559340 ACYP1P07311 99 aa5.15□□□□□ -1.59
LDLR-210ENST00000559340 LCE2CQ5TA81 110 aa5.15□□□□□ -1.59
LDLR-210ENST00000559340 SIGMAR1Q99720 223 aa5.15□□□□□ -1.59
LDLR-210ENST00000559340 UBL5Q9BZL1 73 aa5.15□□□□□ -1.59
LDLR-210ENST00000559340 CDIP1Q9H305 208 aa5.15□□□□□ -1.59
LDLR-210ENST00000559340 LRP2P98164 4655 aa5.15□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 68 ms