RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 MAST4O15021 2626 aa1.25□□□□□ -2.21
TRAV28-201ENST00000557548 HECTD1Q9ULT8 2610 aa1.25□□□□□ -2.21
TRAV28-201ENST00000557548 HRNRQ86YZ3 2850 aaPredicted RBP1.25□□□□□ -2.21
TRAV28-201ENST00000557548 HIVEP2P31629 2446 aa1.25□□□□□ -2.21
TRAV28-201ENST00000557548 SPTBN1Q01082 2364 aaKnown RBP1.25□□□□□ -2.21
TRAV28-201ENST00000557548 CNTRLQ7Z7A1 2325 aa1.24□□□□□ -2.21
TRAV28-201ENST00000557548 PKDREJQ9NTG1 2253 aa1.24□□□□□ -2.21
TRAV28-201ENST00000557548 TLN1Q9Y490 2541 aaKnown RBP1.24□□□□□ -2.21
TRAV28-201ENST00000557548 TRAV21A0A0B4J279 112 aa1.24□□□□□ -2.21
TRAV28-201ENST00000557548 LINC01549A6NIU2 74 aa1.24□□□□□ -2.21
TRAV28-201ENST00000557548 NCR3O14931 201 aa1.24□□□□□ -2.21
TRAV28-201ENST00000557548 DEFB112Q30KQ8 113 aa1.24□□□□□ -2.21
TRAV28-201ENST00000557548 FLNBO75369 2602 aaKnown RBP1.24□□□□□ -2.21
TRAV28-201ENST00000557548 CSMD1Q96PZ7 3565 aa1.24□□□□□ -2.21
TRAV28-201ENST00000557548 LRBAP50851 2863 aa1.24□□□□□ -2.21
TRAV28-201ENST00000557548 FBN2P35556 2912 aa1.23□□□□□ -2.21
TRAV28-201ENST00000557548 CELSR2Q9HCU4 2923 aa1.23□□□□□ -2.21
TRAV28-201ENST00000557548 USP9YO00507 2555 aaPredicted RBP1.23□□□□□ -2.21
TRAV28-201ENST00000557548 TEX15Q9BXT5 2789 aa1.23□□□□□ -2.21
TRAV28-201ENST00000557548 SPTAN1Q13813 2472 aaKnown RBP1.23□□□□□ -2.21
TRAV28-201ENST00000557548 A0A096LNT2 108 aa1.23□□□□□ -2.21
TRAV28-201ENST00000557548 A0A1B0GU69 56 aa1.23□□□□□ -2.21
TRAV28-201ENST00000557548 SPINK13Q1W4C9 94 aa1.23□□□□□ -2.21
TRAV28-201ENST00000557548 Q6ZRX8 168 aa1.23□□□□□ -2.21
TRAV28-201ENST00000557548 PLAC4Q8WY50 150 aa1.23□□□□□ -2.21
TRAV28-201ENST00000557548 GAFA1Q96PS6 74 aa1.23□□□□□ -2.21
TRAV28-201ENST00000557548 U3KQA8 63 aa1.23□□□□□ -2.21
TRAV28-201ENST00000557548 DCHS2Q6V1P9 2916 aa1.23□□□□□ -2.21
TRAV28-201ENST00000557548 OTOGQ6ZRI0 2925 aa1.23□□□□□ -2.21
TRAV28-201ENST00000557548 MYO9AB2RTY4 2548 aa1.23□□□□□ -2.21
TRAV28-201ENST00000557548 ABCA2Q9BZC7 2435 aa1.23□□□□□ -2.21
TRAV28-201ENST00000557548 F8P00451 2351 aa1.22□□□□□ -2.21
TRAV28-201ENST00000557548 DOPEY1Q5JWR5 2465 aa1.22□□□□□ -2.21
TRAV28-201ENST00000557548 CUBNO60494 3623 aa1.22□□□□□ -2.21
TRAV28-201ENST00000557548 GVQW2A0A096LPI5 108 aaPredicted RBP1.22□□□□□ -2.21
TRAV28-201ENST00000557548 PIN1P1O15428 100 aa1.22□□□□□ -2.21
TRAV28-201ENST00000557548 HAMPP81172 84 aa1.22□□□□□ -2.21
TRAV28-201ENST00000557548 SPTA1P02549 2419 aa1.22□□□□□ -2.21
TRAV28-201ENST00000557548 APCP25054 2843 aa1.22□□□□□ -2.21
TRAV28-201ENST00000557548 ANKRD17O75179 2603 aaKnown RBP1.21□□□□□ -2.22
TRAV28-201ENST00000557548 AKAP6Q13023 2319 aa1.21□□□□□ -2.22
TRAV28-201ENST00000557548 ABCA1O95477 2261 aa1.21□□□□□ -2.22
TRAV28-201ENST00000557548 LCE6AA0A183 80 aa1.21□□□□□ -2.22
TRAV28-201ENST00000557548 UBL5Q9BZL1 73 aa1.21□□□□□ -2.22
TRAV28-201ENST00000557548 C2CD3Q4AC94 2353 aa1.2□□□□□ -2.22
TRAV28-201ENST00000557548 NAV3Q8IVL0 2385 aa1.2□□□□□ -2.22
TRAV28-201ENST00000557548 CENPEQ02224 2701 aa1.2□□□□□ -2.22
TRAV28-201ENST00000557548 ADGRG4Q8IZF6 3080 aa1.2□□□□□ -2.22
TRAV28-201ENST00000557548 G3V318 75 aa1.2□□□□□ -2.22
TRAV28-201ENST00000557548 RPL38P63173 70 aaKnown RBP1.2□□□□□ -2.22
TRAV28-201ENST00000557548 ACANP16112 2415 aa1.2□□□□□ -2.22
TRAV28-201ENST00000557548 ABCA12Q86UK0 2595 aa1.2□□□□□ -2.22
TRAV28-201ENST00000557548 HIVEP1P15822 2718 aa1.2□□□□□ -2.22
TRAV28-201ENST00000557548 LRRK2Q5S007 2527 aa1.2□□□□□ -2.22
TRAV28-201ENST00000557548 UNC79Q9P2D8 2635 aa1.19□□□□□ -2.22
TRAV28-201ENST00000557548 POLQO75417 2590 aa1.19□□□□□ -2.22
TRAV28-201ENST00000557548 PRRC2CQ9Y520 2896 aaKnown RBP1.19□□□□□ -2.22
TRAV28-201ENST00000557548 ITPR3Q14573 2671 aa1.19□□□□□ -2.22
TRAV28-201ENST00000557548 LY6G6CO95867 125 aa1.19□□□□□ -2.22
TRAV28-201ENST00000557548 COX7BP24311 80 aa1.19□□□□□ -2.22
TRAV28-201ENST00000557548 FCER1GP30273 86 aa1.19□□□□□ -2.22
TRAV28-201ENST00000557548 RPL37P61927 97 aaKnown RBP1.19□□□□□ -2.22
TRAV28-201ENST00000557548 ENHOQ6UWT2 76 aa1.19□□□□□ -2.22
TRAV28-201ENST00000557548 CREBBPQ92793 2442 aa1.19□□□□□ -2.22
TRAV28-201ENST00000557548 VPS13CQ709C8 3753 aa1.19□□□□□ -2.22
TRAV28-201ENST00000557548 LINC00959A0A1B0GUT2 108 aa1.18□□□□□ -2.22
TRAV28-201ENST00000557548 NDUFA4O00483 81 aa1.18□□□□□ -2.22
TRAV28-201ENST00000557548 KRTAP12-4P60329 112 aa1.18□□□□□ -2.22
TRAV28-201ENST00000557548 SSBP3-AS1Q7Z2R9 100 aa1.18□□□□□ -2.22
TRAV28-201ENST00000557548 SPG11Q96JI7 2443 aa1.18□□□□□ -2.22
TRAV28-201ENST00000557548 RP1L1Q8IWN7 2480 aaPredicted RBP1.17□□□□□ -2.22
TRAV28-201ENST00000557548 SETD2Q9BYW2 2564 aaPredicted RBP1.17□□□□□ -2.22
TRAV28-201ENST00000557548 FLNAP21333 2647 aaKnown RBP1.17□□□□□ -2.22
TRAV28-201ENST00000557548 PRH1P02810 166 aa1.17□□□□□ -2.22
TRAV28-201ENST00000557548 FXYD6P3P58550 94 aa1.17□□□□□ -2.22
TRAV28-201ENST00000557548 UBE2DNLQ8IWF7 75 aa1.17□□□□□ -2.22
TRAV28-201ENST00000557548 TOMM5Q8N4H5 51 aa1.17□□□□□ -2.22
TRAV28-201ENST00000557548 ZANQ9Y493 2812 aa1.17□□□□□ -2.22
TRAV28-201ENST00000557548 TACC2O95359 2948 aa1.17□□□□□ -2.22
TRAV28-201ENST00000557548 FBN1P35555 2871 aaKnown RBP1.17□□□□□ -2.22
TRAV28-201ENST00000557548 CADP27708 2225 aa1.16□□□□□ -2.22
TRAV28-201ENST00000557548 USF3Q68DE3 2245 aa1.16□□□□□ -2.22
TRAV28-201ENST00000557548 NSD1Q96L73 2696 aaPredicted RBP1.16□□□□□ -2.22
TRAV28-201ENST00000557548 SERF2P84101 59 aa1.16□□□□□ -2.22
TRAV28-201ENST00000557548 DEFB133Q30KQ1 61 aa1.16□□□□□ -2.22
TRAV28-201ENST00000557548 NCBP2-AS2Q69YL0 99 aa1.16□□□□□ -2.22
TRAV28-201ENST00000557548 NMES1Q9C002 83 aa1.16□□□□□ -2.22
TRAV28-201ENST00000557548 NF1P21359 2839 aa1.16□□□□□ -2.22
TRAV28-201ENST00000557548 SVEP1Q4LDE5 3571 aa1.16□□□□□ -2.22
TRAV28-201ENST00000557548 AKAP9Q99996 3911 aa1.15□□□□□ -2.22
TRAV28-201ENST00000557548 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP1.15□□□□□ -2.23
TRAV28-201ENST00000557548 TLN2Q9Y4G6 2542 aa1.15□□□□□ -2.23
TRAV28-201ENST00000557548 SPTY2D1-AS1A0A0U1RR47 76 aa1.15□□□□□ -2.23
TRAV28-201ENST00000557548 LYNX1P0DP58 116 aa1.15□□□□□ -2.23
TRAV28-201ENST00000557548 DEFB114Q30KQ6 69 aa1.15□□□□□ -2.23
TRAV28-201ENST00000557548 Q6ZSA8 131 aa1.15□□□□□ -2.23
TRAV28-201ENST00000557548 CMC2Q9NRP2 79 aa1.15□□□□□ -2.23
TRAV28-201ENST00000557548 CCDC168Q8NDH2 2452 aa1.15□□□□□ -2.23
TRAV28-201ENST00000557548 ROS1P08922 2347 aa1.15□□□□□ -2.23
TRAV28-201ENST00000557548 PLCE1Q9P212 2302 aa1.15□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 1214.2 ms