RNA–Protein interactions for RNA: ENST00000553529.5

SHMT2-206, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 562 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-206ENST00000553529 LIMD2Q9BT23 127 aa9.94□□□□□ -0.82
SHMT2-206ENST00000553529 KRTAP9-2Q9BYQ4 174 aa9.94□□□□□ -0.82
SHMT2-206ENST00000553529 SEC61BP60468 96 aaKnown RBP9.93□□□□□ -0.82
SHMT2-206ENST00000553529 C2orf91Q6ZV80 131 aa9.93□□□□□ -0.82
SHMT2-206ENST00000553529 HSD52Q0P140 79 aa9.92□□□□□ -0.82
SHMT2-206ENST00000553529 LINC00575Q6W349 94 aa9.92□□□□□ -0.82
SHMT2-206ENST00000553529 M0R143 59 aa9.91□□□□□ -0.82
SHMT2-206ENST00000553529 C1orf195Q5TG92 126 aa9.9□□□□□ -0.82
SHMT2-206ENST00000553529 Q6ZQY7 126 aa9.9□□□□□ -0.82
SHMT2-206ENST00000553529 CD164Q04900 197 aa9.89□□□□□ -0.83
SHMT2-206ENST00000553529 PCOTHQ58A44 107 aa9.89□□□□□ -0.83
SHMT2-206ENST00000553529 BATFQ16520 125 aa9.87□□□□□ -0.83
SHMT2-206ENST00000553529 TMEM238LA0A1B0GVL6 79 aa9.86□□□□□ -0.83
SHMT2-206ENST00000553529 A6NJY4 79 aa9.86□□□□□ -0.83
SHMT2-206ENST00000553529 KRTAP19-2Q3LHN2 52 aa9.86□□□□□ -0.83
SHMT2-206ENST00000553529 LCE2CQ5TA81 110 aa9.86□□□□□ -0.83
SHMT2-206ENST00000553529 CEND1Q8N111 149 aa9.86□□□□□ -0.83
SHMT2-206ENST00000553529 hADV29S1A0JD25 119 aa9.85□□□□□ -0.83
SHMT2-206ENST00000553529 NHP2Q9NX24 153 aaKnown RBP9.84□□□□□ -0.83
SHMT2-206ENST00000553529 CFC1BP0CG36 223 aa9.82□□□□□ -0.84
SHMT2-206ENST00000553529 CFC1P0CG37 223 aa9.82□□□□□ -0.84
SHMT2-206ENST00000553529 Q5XG85 94 aa9.82□□□□□ -0.84
SHMT2-206ENST00000553529 IGFL1Q6UW32 110 aa9.82□□□□□ -0.84
SHMT2-206ENST00000553529 IGLV8-61A0A075B6I0 122 aa9.81□□□□□ -0.84
SHMT2-206ENST00000553529 VAMP3Q15836 100 aa9.81□□□□□ -0.84
SHMT2-206ENST00000553529 BVES-AS1Q5T3Y7 98 aa9.81□□□□□ -0.84
SHMT2-206ENST00000553529 H3BUT2 72 aa9.8□□□□□ -0.84
SHMT2-206ENST00000553529 FAM218AQ96MZ4 157 aa9.8□□□□□ -0.84
SHMT2-206ENST00000553529 FXYD2P54710 66 aa9.78□□□□□ -0.84
SHMT2-206ENST00000553529 RAB37Q96AX2 223 aa9.78□□□□□ -0.84
SHMT2-206ENST00000553529 F8WEM9 126 aa9.77□□□□□ -0.85
SHMT2-206ENST00000553529 TRBV7-7A0A0K0K1E9 115 aa9.74□□□□□ -0.85
SHMT2-206ENST00000553529 OCIAD2Q56VL3 154 aa9.74□□□□□ -0.85
SHMT2-206ENST00000553529 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.74□□□□□ -0.85
SHMT2-206ENST00000553529 CLEC2BQ92478 149 aa9.74□□□□□ -0.85
SHMT2-206ENST00000553529 SNHG12Q9BXW3 62 aa9.74□□□□□ -0.85
SHMT2-206ENST00000553529 COL5A1-AS1Q5SY13 56 aa9.73□□□□□ -0.85
SHMT2-206ENST00000553529 A0A0B4J2C4 111 aa9.71□□□□□ -0.86
SHMT2-206ENST00000553529 K7ERJ3 54 aa9.71□□□□□ -0.86
SHMT2-206ENST00000553529 RPL37P61927 97 aaKnown RBP9.71□□□□□ -0.86
SHMT2-206ENST00000553529 TCL1BO95988 128 aa9.7□□□□□ -0.86
SHMT2-206ENST00000553529 MT1HP80294 61 aa9.7□□□□□ -0.86
SHMT2-206ENST00000553529 Q6JHZ5 121 aa9.69□□□□□ -0.86
SHMT2-206ENST00000553529 PRO1854Q9UHT4 67 aa9.69□□□□□ -0.86
SHMT2-206ENST00000553529 PSMB2P49721 201 aa9.64□□□□□ -0.87
SHMT2-206ENST00000553529 OBSCN-AS1Q96MR7 158 aa9.64□□□□□ -0.87
SHMT2-206ENST00000553529 TRIAP1O43715 76 aa9.63□□□□□ -0.87
SHMT2-206ENST00000553529 A0A1B0GV72 72 aa9.62□□□□□ -0.87
SHMT2-206ENST00000553529 NDUFV3P56181 108 aaKnown RBP9.62□□□□□ -0.87
SHMT2-206ENST00000553529 PPDPFLQ8WWR9 84 aa9.61□□□□□ -0.87
SHMT2-206ENST00000553529 LYRM7Q5U5X0 104 aa9.6□□□□□ -0.87
SHMT2-206ENST00000553529 C9orf118A6NHY6 69 aa9.59□□□□□ -0.87
SHMT2-206ENST00000553529 TAX1BP3O14907 124 aa9.59□□□□□ -0.87
SHMT2-206ENST00000553529 COX6CP09669 75 aa9.59□□□□□ -0.87
SHMT2-206ENST00000553529 KRTAP9-6A0A140TA67 174 aa9.58□□□□□ -0.88
SHMT2-206ENST00000553529 H0YGX0 51 aa9.58□□□□□ -0.88
SHMT2-206ENST00000553529 SCGB1C2P0DMR2 95 aa9.58□□□□□ -0.88
SHMT2-206ENST00000553529 FABP2P12104 132 aa9.57□□□□□ -0.88
SHMT2-206ENST00000553529 NAA38Q9BRA0 125 aaKnown RBP9.57□□□□□ -0.88
SHMT2-206ENST00000553529 A0A087WSZ3 146 aa9.56□□□□□ -0.88
SHMT2-206ENST00000553529 LST1O00453 97 aa9.56□□□□□ -0.88
SHMT2-206ENST00000553529 Q96NJ1 140 aa9.56□□□□□ -0.88
SHMT2-206ENST00000553529 A0A1W2PNM2 257 aa9.55□□□□□ -0.88
SHMT2-206ENST00000553529 H3BMG7 143 aa9.55□□□□□ -0.88
SHMT2-206ENST00000553529 Q6Q795 121 aa9.53□□□□□ -0.88
SHMT2-206ENST00000553529 FLGP20930 4061 aaPredicted RBP9.53□□□□□ -0.88
SHMT2-206ENST00000553529 A0A1W2PPM0 123 aa9.52□□□□□ -0.89
SHMT2-206ENST00000553529 LCE2DQ5TA82 110 aaPredicted RBP9.51□□□□□ -0.89
SHMT2-206ENST00000553529 TEN1Q86WV5 123 aa9.51□□□□□ -0.89
SHMT2-206ENST00000553529 SNCGO76070 127 aa9.5□□□□□ -0.89
SHMT2-206ENST00000553529 LORP23490 312 aaPredicted RBP9.49□□□□□ -0.89
SHMT2-206ENST00000553529 KRTAP10-6P60371 365 aaPredicted RBP9.49□□□□□ -0.89
SHMT2-206ENST00000553529 Q75L30 129 aa9.49□□□□□ -0.89
SHMT2-206ENST00000553529 DSCR10P59022 87 aa9.48□□□□□ -0.89
SHMT2-206ENST00000553529 SPCS1Q9Y6A9 102 aa9.48□□□□□ -0.89
SHMT2-206ENST00000553529 A0A1B0GX51 115 aa9.47□□□□□ -0.89
SHMT2-206ENST00000553529 COX6B2Q6YFQ2 88 aa9.47□□□□□ -0.89
SHMT2-206ENST00000553529 TRBV20-1A0A075B6N2 111 aa9.46□□□□□ -0.9
SHMT2-206ENST00000553529 ATXN8Q156A1 80 aa9.46□□□□□ -0.9
SHMT2-206ENST00000553529 GTF2H5Q6ZYL4 71 aa9.46□□□□□ -0.9
SHMT2-206ENST00000553529 A0A1B0GV90 55 aa9.45□□□□□ -0.9
SHMT2-206ENST00000553529 SS18L2Q9UHA2 77 aa9.45□□□□□ -0.9
SHMT2-206ENST00000553529 DEFB116Q30KQ4 102 aa9.44□□□□□ -0.9
SHMT2-206ENST00000553529 DNAL4O96015 105 aa9.43□□□□□ -0.9
SHMT2-206ENST00000553529 ATP11AUNQ6ZP68 121 aa9.43□□□□□ -0.9
SHMT2-206ENST00000553529 NOTCH2NLQ7Z3S9 236 aa9.43□□□□□ -0.9
SHMT2-206ENST00000553529 ORMDL1Q9P0S3 153 aa9.43□□□□□ -0.9
SHMT2-206ENST00000553529 K7EP34 96 aa9.42□□□□□ -0.9
SHMT2-206ENST00000553529 SIGMAR1Q99720 223 aa9.42□□□□□ -0.9
SHMT2-206ENST00000553529 FSIP2Q5CZC0 6907 aa9.41□□□□□ -0.9
SHMT2-206ENST00000553529 M0R2T5 61 aa9.41□□□□□ -0.9
SHMT2-206ENST00000553529 C20orf166-AS1Q96NR2 134 aa9.41□□□□□ -0.9
SHMT2-206ENST00000553529 A8MUU9 505 aa9.4□□□□□ -0.9
SHMT2-206ENST00000553529 KRTAP16-1A8MUX0 517 aa9.4□□□□□ -0.9
SHMT2-206ENST00000553529 ANKRD29Q8N6D5 301 aa9.4□□□□□ -0.9
SHMT2-206ENST00000553529 TRACP01848 142 aa9.37□□□□□ -0.91
SHMT2-206ENST00000553529 IGKV4-1P06312 121 aa9.36□□□□□ -0.91
SHMT2-206ENST00000553529 TRBV7-4A0A0J9YYF1 115 aa9.34□□□□□ -0.91
SHMT2-206ENST00000553529 GHRHP01286 108 aa9.34□□□□□ -0.91
SHMT2-206ENST00000553529 CCKP06307 115 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 72.1 ms