RNA–Protein interactions for RNA: ENST00000535236.5

SFSWAP-203, Transcript of splicing factor SWAP, humanhuman

TSL 1 (best)

Gene SFSWAP, Length 5,593 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-203ENST00000535236 PRRC2CQ9Y520 2896 aaKnown RBP10.89□□□□□ -0.67
SFSWAP-203ENST00000535236 KRTAP10-2P60368 255 aa10.89□□□□□ -0.67
SFSWAP-203ENST00000535236 KRTAP26-1Q6PEX3 210 aa10.83□□□□□ -0.68
SFSWAP-203ENST00000535236 M0QZ58 72 aa10.82□□□□□ -0.68
SFSWAP-203ENST00000535236 STAB1Q9NY15 2570 aa10.81□□□□□ -0.68
SFSWAP-203ENST00000535236 PRAC1Q96KF2 57 aa10.81□□□□□ -0.68
SFSWAP-203ENST00000535236 FP248Q71RG6 208 aaPredicted RBP10.8□□□□□ -0.68
SFSWAP-203ENST00000535236 RPL37P61927 97 aaKnown RBP10.79□□□□□ -0.68
SFSWAP-203ENST00000535236 GOLGB1Q14789 3259 aaKnown RBP10.79□□□□□ -0.68
SFSWAP-203ENST00000535236 Q5VV11 94 aa10.78□□□□□ -0.68
SFSWAP-203ENST00000535236 OXTP01178 125 aa10.75□□□□□ -0.69
SFSWAP-203ENST00000535236 A0A0A0MQY5 61 aa10.74□□□□□ -0.69
SFSWAP-203ENST00000535236 PLAC4Q8WY50 150 aa10.73□□□□□ -0.69
SFSWAP-203ENST00000535236 CFAP46Q8IYW2 2715 aa10.73□□□□□ -0.69
SFSWAP-203ENST00000535236 Q5XG85 94 aa10.72□□□□□ -0.69
SFSWAP-203ENST00000535236 ROMO1P60602 79 aa10.71□□□□□ -0.69
SFSWAP-203ENST00000535236 H1FX-AS1Q4G0G2 97 aa10.71□□□□□ -0.69
SFSWAP-203ENST00000535236 CYSTM1Q9H1C7 97 aa10.71□□□□□ -0.69
SFSWAP-203ENST00000535236 FLG2Q5D862 2391 aaPredicted RBP10.67□□□□□ -0.7
SFSWAP-203ENST00000535236 Q6ZR54 194 aa10.67□□□□□ -0.7
SFSWAP-203ENST00000535236 ADM2Q7Z4H4 148 aa10.67□□□□□ -0.7
SFSWAP-203ENST00000535236 PANO1I0J062 215 aa10.66□□□□□ -0.7
SFSWAP-203ENST00000535236 A0A087X002 238 aa10.59□□□□□ -0.71
SFSWAP-203ENST00000535236 KRTAP4-16G5E9R7 235 aaPredicted RBP10.58□□□□□ -0.72
SFSWAP-203ENST00000535236 SPATA8Q6RVD6 105 aa10.55□□□□□ -0.72
SFSWAP-203ENST00000535236 NBEAL1Q6ZS30 2694 aa10.54□□□□□ -0.72
SFSWAP-203ENST00000535236 KRTAP29-1A8MX34 341 aaPredicted RBP10.5□□□□□ -0.73
SFSWAP-203ENST00000535236 TEX15Q9BXT5 2789 aa10.49□□□□□ -0.73
SFSWAP-203ENST00000535236 TEP1Q99973 2627 aaKnown RBP10.48□□□□□ -0.73
SFSWAP-203ENST00000535236 AKAP13Q12802 2813 aa10.48□□□□□ -0.73
SFSWAP-203ENST00000535236 DNAH12Q6ZR08 3092 aa10.48□□□□□ -0.73
SFSWAP-203ENST00000535236 CEP350Q5VT06 3117 aa10.46□□□□□ -0.73
SFSWAP-203ENST00000535236 CENPEQ02224 2701 aa10.46□□□□□ -0.74
SFSWAP-203ENST00000535236 CHD6Q8TD26 2715 aa10.45□□□□□ -0.74
SFSWAP-203ENST00000535236 SETXQ7Z333 2677 aaKnown RBP10.44□□□□□ -0.74
SFSWAP-203ENST00000535236 H3BS24 57 aa10.44□□□□□ -0.74
SFSWAP-203ENST00000535236 RPS29P62273 56 aaKnown RBP10.42□□□□□ -0.74
SFSWAP-203ENST00000535236 NOTCH2NLQ7Z3S9 236 aa10.41□□□□□ -0.74
SFSWAP-203ENST00000535236 ASB16-AS1Q495Z4 193 aa10.39□□□□□ -0.75
SFSWAP-203ENST00000535236 DMBT1Q9UGM3 2413 aaPredicted RBP10.38□□□□□ -0.75
SFSWAP-203ENST00000535236 COL6A5A8TX70 2615 aa10.35□□□□□ -0.75
SFSWAP-203ENST00000535236 C5orf42Q9H799 3197 aa10.34□□□□□ -0.75
SFSWAP-203ENST00000535236 Q6ZRN7 208 aaPredicted RBP10.34□□□□□ -0.75
SFSWAP-203ENST00000535236 KRTAP11-1Q8IUC1 163 aa10.34□□□□□ -0.75
SFSWAP-203ENST00000535236 A8MUU9 505 aa10.33□□□□□ -0.76
SFSWAP-203ENST00000535236 UNC79Q9P2D8 2635 aa10.33□□□□□ -0.76
SFSWAP-203ENST00000535236 UTRNP46939 3433 aa10.26□□□□□ -0.77
SFSWAP-203ENST00000535236 C20orf166-AS1Q96NR2 134 aa10.25□□□□□ -0.77
SFSWAP-203ENST00000535236 GCN1Q92616 2671 aaKnown RBP10.24□□□□□ -0.77
SFSWAP-203ENST00000535236 KRTAP13-2Q52LG2 175 aa10.23□□□□□ -0.77
SFSWAP-203ENST00000535236 NOTCH1P46531 2555 aa10.22□□□□□ -0.77
SFSWAP-203ENST00000535236 CHD7Q9P2D1 2997 aa10.22□□□□□ -0.77
SFSWAP-203ENST00000535236 A8MU10 97 aa10.21□□□□□ -0.78
SFSWAP-203ENST00000535236 STAB2Q8WWQ8 2551 aa10.2□□□□□ -0.78
SFSWAP-203ENST00000535236 KRTAP7-1Q8IUC3 87 aa10.18□□□□□ -0.78
SFSWAP-203ENST00000535236 PCNTO95613 3336 aa10.17□□□□□ -0.78
SFSWAP-203ENST00000535236 BAHCC1Q9P281 2608 aa10.13□□□□□ -0.79
SFSWAP-203ENST00000535236 KRTAP13-1Q8IUC0 172 aa10.13□□□□□ -0.79
SFSWAP-203ENST00000535236 KRTAP25-1Q3LHN0 102 aa10.1□□□□□ -0.79
SFSWAP-203ENST00000535236 MGAQ8IWI9 3026 aa10.09□□□□□ -0.79
SFSWAP-203ENST00000535236 ZNF292O60281 2723 aa10.06□□□□□ -0.8
SFSWAP-203ENST00000535236 CHD9Q3L8U1 2897 aa10.04□□□□□ -0.8
SFSWAP-203ENST00000535236 TNP1P09430 55 aa10.03□□□□□ -0.8
SFSWAP-203ENST00000535236 KRTAP21-3Q3LHN1 58 aa10.02□□□□□ -0.81
SFSWAP-203ENST00000535236 NBEAL2Q6ZNJ1 2754 aa10.01□□□□□ -0.81
SFSWAP-203ENST00000535236 A6NN06 94 aa9.98□□□□□ -0.81
SFSWAP-203ENST00000535236 KRTAP16-1A8MUX0 517 aa9.97□□□□□ -0.81
SFSWAP-203ENST00000535236 CFAP54Q96N23 3096 aa9.96□□□□□ -0.82
SFSWAP-203ENST00000535236 NSD1Q96L73 2696 aaPredicted RBP9.95□□□□□ -0.82
SFSWAP-203ENST00000535236 IGSF10Q6WRI0 2623 aa9.94□□□□□ -0.82
SFSWAP-203ENST00000535236 UBR5O95071 2799 aaPredicted RBP9.94□□□□□ -0.82
SFSWAP-203ENST00000535236 A0A0C4DFX4 3053 aa9.92□□□□□ -0.82
SFSWAP-203ENST00000535236 MAP1AP78559 2803 aaPredicted RBP9.9□□□□□ -0.82
SFSWAP-203ENST00000535236 ITPR2Q14571 2701 aa9.9□□□□□ -0.83
SFSWAP-203ENST00000535236 C10orf95Q9H7T3 257 aa9.84□□□□□ -0.83
SFSWAP-203ENST00000535236 DSPP15924 2871 aaKnown RBP9.81□□□□□ -0.84
SFSWAP-203ENST00000535236 NDUFAF8A1L188 74 aa9.8□□□□□ -0.84
SFSWAP-203ENST00000535236 KRTAP10-8P60410 259 aa9.78□□□□□ -0.84
SFSWAP-203ENST00000535236 FRYQ5TBA9 3013 aa9.77□□□□□ -0.85
SFSWAP-203ENST00000535236 XP32Q5T750 250 aa9.76□□□□□ -0.85
SFSWAP-203ENST00000535236 RANBP2P49792 3224 aaKnown RBP9.75□□□□□ -0.85
SFSWAP-203ENST00000535236 TRANK1O15050 2925 aa9.75□□□□□ -0.85
SFSWAP-203ENST00000535236 A0A1B0GVY2 172 aa9.74□□□□□ -0.85
SFSWAP-203ENST00000535236 WDFY4Q6ZS81 3184 aa9.71□□□□□ -0.85
SFSWAP-203ENST00000535236 HTTP42858 3142 aa9.7□□□□□ -0.86
SFSWAP-203ENST00000535236 KMT2BQ9UMN6 2715 aaPredicted RBP9.69□□□□□ -0.86
SFSWAP-203ENST00000535236 KRTAP1-4P0C5Y4 121 aa9.68□□□□□ -0.86
SFSWAP-203ENST00000535236 ITPR1Q14643 2758 aa9.67□□□□□ -0.86
SFSWAP-203ENST00000535236 PP632Q6XCG6 107 aa9.67□□□□□ -0.86
SFSWAP-203ENST00000535236 PRUNE2Q8WUY3 3088 aa9.6□□□□□ -0.87
SFSWAP-203ENST00000535236 TPRXLQ17RH7 258 aa9.59□□□□□ -0.87
SFSWAP-203ENST00000535236 KRTAP10-10P60014 251 aa9.57□□□□□ -0.88
SFSWAP-203ENST00000535236 LAMA3Q16787 3333 aa9.56□□□□□ -0.88
SFSWAP-203ENST00000535236 MKI67P46013 3256 aaKnown RBP9.54□□□□□ -0.88
SFSWAP-203ENST00000535236 TRIOO75962 3097 aa9.52□□□□□ -0.89
SFSWAP-203ENST00000535236 UTP20O75691 2785 aaKnown RBP9.51□□□□□ -0.89
SFSWAP-203ENST00000535236 APCP25054 2843 aa9.51□□□□□ -0.89
SFSWAP-203ENST00000535236 TENM4Q6N022 2769 aa9.49□□□□□ -0.89
SFSWAP-203ENST00000535236 PRO2289Q9P1D8 64 aa9.49□□□□□ -0.89
SFSWAP-203ENST00000535236 BRCA2P51587 3418 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 114.9 ms