RNA–Protein interactions for RNA: ENST00000534885.5

TNFRSF1A-205, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best)

Gene TNFRSF1A, Length 2,069 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-205ENST00000534885 GAGE2AQ6NT46 116 aa12.47□□□□□ -0.41
TNFRSF1A-205ENST00000534885 Q8N377 158 aa12.47□□□□□ -0.41
TNFRSF1A-205ENST00000534885 OBSCN-AS1Q96MR7 158 aa12.46□□□□□ -0.41
TNFRSF1A-205ENST00000534885 H3BQ85 93 aa12.46□□□□□ -0.42
TNFRSF1A-205ENST00000534885 GHRHP01286 108 aa12.46□□□□□ -0.42
TNFRSF1A-205ENST00000534885 LAMTOR3Q9UHA4 124 aa12.46□□□□□ -0.42
TNFRSF1A-205ENST00000534885 IGLV5-48A0A075B6I7 105 aa12.45□□□□□ -0.42
TNFRSF1A-205ENST00000534885 C14orf132Q9NPU4 83 aa12.43□□□□□ -0.42
TNFRSF1A-205ENST00000534885 J3KT08 172 aa12.42□□□□□ -0.42
TNFRSF1A-205ENST00000534885 C3orf22Q8N5N4 141 aa12.42□□□□□ -0.42
TNFRSF1A-205ENST00000534885 FAM236AA0A1B0GUQ0 79 aa12.41□□□□□ -0.42
TNFRSF1A-205ENST00000534885 FAM236BA0A1B0GV22 79 aa12.41□□□□□ -0.42
TNFRSF1A-205ENST00000534885 JMJD7-PLA2G4BH0Y9G9 81 aa12.4□□□□□ -0.42
TNFRSF1A-205ENST00000534885 RPS28P62857 69 aaKnown RBP12.4□□□□□ -0.42
TNFRSF1A-205ENST00000534885 ZNF861PO60384 105 aa12.39□□□□□ -0.43
TNFRSF1A-205ENST00000534885 IGLV7-43P04211 117 aa12.39□□□□□ -0.43
TNFRSF1A-205ENST00000534885 APOBP04114 4563 aaKnown RBP12.37□□□□□ -0.43
TNFRSF1A-205ENST00000534885 RBM3P98179 157 aaKnown RBP12.36□□□□□ -0.43
TNFRSF1A-205ENST00000534885 VPS13BQ7Z7G8 4022 aa12.36□□□□□ -0.43
TNFRSF1A-205ENST00000534885 SMIM29Q86T20 159 aa12.34□□□□□ -0.43
TNFRSF1A-205ENST00000534885 LINC00846Q9NV44 126 aa12.32□□□□□ -0.44
TNFRSF1A-205ENST00000534885 UQCRQO14949 82 aa12.3□□□□□ -0.44
TNFRSF1A-205ENST00000534885 SPRR1BP22528 89 aa12.3□□□□□ -0.44
TNFRSF1A-205ENST00000534885 C9orf153Q5TBE3 101 aa12.3□□□□□ -0.44
TNFRSF1A-205ENST00000534885 Q6JHZ5 121 aa12.3□□□□□ -0.44
TNFRSF1A-205ENST00000534885 DSCR8Q96T75 97 aa12.3□□□□□ -0.44
TNFRSF1A-205ENST00000534885 SMR3BP02814 79 aaPredicted RBP12.3□□□□□ -0.44
TNFRSF1A-205ENST00000534885 CCKP06307 115 aa12.3□□□□□ -0.44
TNFRSF1A-205ENST00000534885 SPRR4Q96PI1 79 aa12.3□□□□□ -0.44
TNFRSF1A-205ENST00000534885 TRBV7-4A0A0J9YYF1 115 aa12.29□□□□□ -0.44
TNFRSF1A-205ENST00000534885 Q6ZQT0 140 aa12.28□□□□□ -0.44
TNFRSF1A-205ENST00000534885 LOC110117498A0A087WWA1 95 aa12.28□□□□□ -0.44
TNFRSF1A-205ENST00000534885 HIST1H4AP62805 103 aaKnown RBP12.26□□□□□ -0.45
TNFRSF1A-205ENST00000534885 IGKV3D-7A0A0C4DH55 119 aa12.25□□□□□ -0.45
TNFRSF1A-205ENST00000534885 ZNF706Q9Y5V0 76 aaPredicted RBP12.25□□□□□ -0.45
TNFRSF1A-205ENST00000534885 F8WEM9 126 aa12.23□□□□□ -0.45
TNFRSF1A-205ENST00000534885 LINC00483Q53H64 154 aa12.23□□□□□ -0.45
TNFRSF1A-205ENST00000534885 ANAPC11Q9NYG5 84 aa12.23□□□□□ -0.45
TNFRSF1A-205ENST00000534885 RPL37AP61513 92 aaKnown RBP12.23□□□□□ -0.45
TNFRSF1A-205ENST00000534885 PDE6GP18545 87 aa12.22□□□□□ -0.45
TNFRSF1A-205ENST00000534885 FAT1Q14517 4588 aa12.21□□□□□ -0.45
TNFRSF1A-205ENST00000534885 ATOX1O00244 68 aa12.21□□□□□ -0.45
TNFRSF1A-205ENST00000534885 A0A0G2JQZ4 141 aa12.2□□□□□ -0.46
TNFRSF1A-205ENST00000534885 IGLV8-61A0A075B6I0 122 aa12.18□□□□□ -0.46
TNFRSF1A-205ENST00000534885 COX7CP15954 63 aa12.18□□□□□ -0.46
TNFRSF1A-205ENST00000534885 CRYGAP11844 174 aa12.17□□□□□ -0.46
TNFRSF1A-205ENST00000534885 IGFL1Q6UW32 110 aa12.17□□□□□ -0.46
TNFRSF1A-205ENST00000534885 IGLV9-49A0A0B4J1Y8 123 aa12.16□□□□□ -0.46
TNFRSF1A-205ENST00000534885 ATP5EP2Q5VTU8 51 aa12.14□□□□□ -0.47
TNFRSF1A-205ENST00000534885 EPPK1P58107 5090 aaKnown RBP12.14□□□□□ -0.47
TNFRSF1A-205ENST00000534885 A0A087WVE0 104 aa12.14□□□□□ -0.47
TNFRSF1A-205ENST00000534885 A0A1W2PNM2 257 aa12.14□□□□□ -0.47
TNFRSF1A-205ENST00000534885 KRTAP10-4P60372 401 aaPredicted RBP12.14□□□□□ -0.47
TNFRSF1A-205ENST00000534885 HSPG2P98160 4391 aa12.13□□□□□ -0.47
TNFRSF1A-205ENST00000534885 CDK2AP2O75956 126 aa12.11□□□□□ -0.47
TNFRSF1A-205ENST00000534885 TMEM258P61165 79 aa12.11□□□□□ -0.47
TNFRSF1A-205ENST00000534885 Q8NBF4 154 aa12.1□□□□□ -0.47
TNFRSF1A-205ENST00000534885 UBL5Q9BZL1 73 aa12.1□□□□□ -0.47
TNFRSF1A-205ENST00000534885 MOBPQ13875 183 aa12.09□□□□□ -0.47
TNFRSF1A-205ENST00000534885 KRTAP1-4P0C5Y4 121 aa12.08□□□□□ -0.48
TNFRSF1A-205ENST00000534885 SPINK6Q6UWN8 80 aa12.07□□□□□ -0.48
TNFRSF1A-205ENST00000534885 SERP2Q8N6R1 65 aa12.07□□□□□ -0.48
TNFRSF1A-205ENST00000534885 A0A087X002 238 aa12.06□□□□□ -0.48
TNFRSF1A-205ENST00000534885 RYR1P21817 5038 aa12.04□□□□□ -0.48
TNFRSF1A-205ENST00000534885 KIAA1109Q2LD37 5005 aa12.01□□□□□ -0.49
TNFRSF1A-205ENST00000534885 PRO0628Q9UI54 55 aa12.01□□□□□ -0.49
TNFRSF1A-205ENST00000534885 FAM229AH3BQW9 127 aa12.01□□□□□ -0.49
TNFRSF1A-205ENST00000534885 KRTAP13-2Q52LG2 175 aa12.01□□□□□ -0.49
TNFRSF1A-205ENST00000534885 FAM229BQ4G0N7 80 aa12□□□□□ -0.49
TNFRSF1A-205ENST00000534885 Q6ZVQ6 151 aa12□□□□□ -0.49
TNFRSF1A-205ENST00000534885 PLA2G1BP04054 148 aaKnown RBP11.99□□□□□ -0.49
TNFRSF1A-205ENST00000534885 Q5XG85 94 aa11.99□□□□□ -0.49
TNFRSF1A-205ENST00000534885 C4orf26Q17RF5 130 aa11.99□□□□□ -0.49
TNFRSF1A-205ENST00000534885 A0A1B0GW54 56 aa11.98□□□□□ -0.49
TNFRSF1A-205ENST00000534885 HRCT1Q6UXD1 115 aa11.98□□□□□ -0.49
TNFRSF1A-205ENST00000534885 KRTAP17-1Q9BYP8 105 aa11.98□□□□□ -0.49
TNFRSF1A-205ENST00000534885 Q5VSD8 79 aa11.98□□□□□ -0.49
TNFRSF1A-205ENST00000534885 A0A087WSZ3 146 aa11.97□□□□□ -0.49
TNFRSF1A-205ENST00000534885 CYSTM1Q9H1C7 97 aa11.95□□□□□ -0.5
TNFRSF1A-205ENST00000534885 NREPQ16612 68 aa11.93□□□□□ -0.5
TNFRSF1A-205ENST00000534885 SSBP3-AS1Q7Z2R9 100 aa11.93□□□□□ -0.5
TNFRSF1A-205ENST00000534885 CXCL6P80162 114 aa11.91□□□□□ -0.5
TNFRSF1A-205ENST00000534885 PKHD1L1Q86WI1 4243 aa11.9□□□□□ -0.5
TNFRSF1A-205ENST00000534885 PRR26Q8N8Z3 221 aa11.89□□□□□ -0.51
TNFRSF1A-205ENST00000534885 OXTP01178 125 aa11.88□□□□□ -0.51
TNFRSF1A-205ENST00000534885 TYMSOSQ8TAI1 123 aa11.86□□□□□ -0.51
TNFRSF1A-205ENST00000534885 Q8N1X5 172 aa11.85□□□□□ -0.51
TNFRSF1A-205ENST00000534885 SEC61GP60059 68 aa11.84□□□□□ -0.51
TNFRSF1A-205ENST00000534885 TRAV7A0A075B6U4 112 aa11.83□□□□□ -0.52
TNFRSF1A-205ENST00000534885 CD164Q04900 197 aa11.82□□□□□ -0.52
TNFRSF1A-205ENST00000534885 DEFB116Q30KQ4 102 aa11.82□□□□□ -0.52
TNFRSF1A-205ENST00000534885 BPY2O14599 106 aa11.8□□□□□ -0.52
TNFRSF1A-205ENST00000534885 C20orf197Q8N268 126 aa11.79□□□□□ -0.52
TNFRSF1A-205ENST00000534885 V9GYY9 64 aa11.79□□□□□ -0.52
TNFRSF1A-205ENST00000534885 LINC00472Q9H8W2 130 aa11.77□□□□□ -0.52
TNFRSF1A-205ENST00000534885 Q8N9L7 120 aa11.77□□□□□ -0.53
TNFRSF1A-205ENST00000534885 LRP1Q07954 4544 aaKnown RBP11.75□□□□□ -0.53
TNFRSF1A-205ENST00000534885 Q96NJ1 140 aa11.75□□□□□ -0.53
TNFRSF1A-205ENST00000534885 SERP1Q9Y6X1 66 aa11.75□□□□□ -0.53
TNFRSF1A-205ENST00000534885 DSCR10P59022 87 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms