RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 H7C2G1 150 aa7.28□□□□□ -1.24
VPS28-216ENST00000533806 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.28□□□□□ -1.24
VPS28-216ENST00000533806 UQCR10Q9UDW1 63 aa7.28□□□□□ -1.24
VPS28-216ENST00000533806 H0YGX0 51 aa7.27□□□□□ -1.25
VPS28-216ENST00000533806 KRTAP13-3Q3SY46 172 aa7.27□□□□□ -1.25
VPS28-216ENST00000533806 IGLV8-61A0A075B6I0 122 aa7.26□□□□□ -1.25
VPS28-216ENST00000533806 A0A0G2JQZ4 141 aa7.26□□□□□ -1.25
VPS28-216ENST00000533806 FAM218AQ96MZ4 157 aa7.26□□□□□ -1.25
VPS28-216ENST00000533806 MUC17Q685J3 4493 aa7.25□□□□□ -1.25
VPS28-216ENST00000533806 Q5XG85 94 aa7.25□□□□□ -1.25
VPS28-216ENST00000533806 HRCT1Q6UXD1 115 aa7.25□□□□□ -1.25
VPS28-216ENST00000533806 PPDPFLQ8WWR9 84 aa7.25□□□□□ -1.25
VPS28-216ENST00000533806 LIMD2Q9BT23 127 aa7.23□□□□□ -1.25
VPS28-216ENST00000533806 CDIP1Q9H305 208 aa7.23□□□□□ -1.25
VPS28-216ENST00000533806 TRIAP1O43715 76 aa7.22□□□□□ -1.25
VPS28-216ENST00000533806 A0A1B0GX51 115 aa7.21□□□□□ -1.26
VPS28-216ENST00000533806 K7ERJ3 54 aa7.21□□□□□ -1.26
VPS28-216ENST00000533806 OCIAD2Q56VL3 154 aa7.21□□□□□ -1.26
VPS28-216ENST00000533806 F8WEM9 126 aa7.19□□□□□ -1.26
VPS28-216ENST00000533806 SMIM6P0DI80 62 aa7.19□□□□□ -1.26
VPS28-216ENST00000533806 Q6JHZ5 121 aa7.19□□□□□ -1.26
VPS28-216ENST00000533806 IGFL1Q6UW32 110 aa7.19□□□□□ -1.26
VPS28-216ENST00000533806 SNHG12Q9BXW3 62 aa7.18□□□□□ -1.26
VPS28-216ENST00000533806 SNCGO76070 127 aa7.17□□□□□ -1.26
VPS28-216ENST00000533806 C1orf195Q5TG92 126 aa7.17□□□□□ -1.26
VPS28-216ENST00000533806 CLEC2BQ92478 149 aa7.17□□□□□ -1.26
VPS28-216ENST00000533806 LOC105371267A0A1B0GV96 52 aa7.15□□□□□ -1.26
VPS28-216ENST00000533806 H3BUT2 72 aa7.14□□□□□ -1.27
VPS28-216ENST00000533806 NDUFV3P56181 108 aaKnown RBP7.14□□□□□ -1.27
VPS28-216ENST00000533806 XP32Q5T750 250 aa7.14□□□□□ -1.27
VPS28-216ENST00000533806 TRBV7-7A0A0K0K1E9 115 aa7.13□□□□□ -1.27
VPS28-216ENST00000533806 PSMB2P49721 201 aa7.13□□□□□ -1.27
VPS28-216ENST00000533806 ASB16-AS1Q495Z4 193 aa7.13□□□□□ -1.27
VPS28-216ENST00000533806 Q6Q795 121 aa7.12□□□□□ -1.27
VPS28-216ENST00000533806 TCL1BO95988 128 aa7.11□□□□□ -1.27
VPS28-216ENST00000533806 GHRHP01286 108 aa7.11□□□□□ -1.27
VPS28-216ENST00000533806 COX6CP09669 75 aa7.11□□□□□ -1.27
VPS28-216ENST00000533806 FAT4Q6V0I7 4981 aa7.1□□□□□ -1.27
VPS28-216ENST00000533806 H3BMG7 143 aa7.09□□□□□ -1.27
VPS28-216ENST00000533806 FABP2P12104 132 aa7.09□□□□□ -1.27
VPS28-216ENST00000533806 H3BQ85 93 aa7.08□□□□□ -1.28
VPS28-216ENST00000533806 M0R143 59 aa7.08□□□□□ -1.28
VPS28-216ENST00000533806 LST1O00453 97 aa7.08□□□□□ -1.28
VPS28-216ENST00000533806 TRACP01848 142 aa7.08□□□□□ -1.28
VPS28-216ENST00000533806 ORMDL1Q9P0S3 153 aa7.08□□□□□ -1.28
VPS28-216ENST00000533806 DNAL4O96015 105 aa7.07□□□□□ -1.28
VPS28-216ENST00000533806 TEN1Q86WV5 123 aa7.07□□□□□ -1.28
VPS28-216ENST00000533806 TMEM256-PLSCR3K7ERE1 68 aa7.06□□□□□ -1.28
VPS28-216ENST00000533806 KRTAP4-1Q9BYQ7 146 aa7.06□□□□□ -1.28
VPS28-216ENST00000533806 C9orf92A6NGG3 77 aa7.05□□□□□ -1.28
VPS28-216ENST00000533806 SEC61BP60468 96 aaKnown RBP7.05□□□□□ -1.28
VPS28-216ENST00000533806 A0A1W2PNM2 257 aa7.04□□□□□ -1.28
VPS28-216ENST00000533806 TSTD3H0UI37 97 aa7.04□□□□□ -1.28
VPS28-216ENST00000533806 SCGB1C2P0DMR2 95 aa7.04□□□□□ -1.28
VPS28-216ENST00000533806 UBE2V1Q13404 147 aa7.03□□□□□ -1.28
VPS28-216ENST00000533806 A0A087WSZ3 146 aa7□□□□□ -1.29
VPS28-216ENST00000533806 TRBV7-4A0A0J9YYF1 115 aa7□□□□□ -1.29
VPS28-216ENST00000533806 Q96NJ1 140 aa7□□□□□ -1.29
VPS28-216ENST00000533806 NAA38Q9BRA0 125 aaKnown RBP7□□□□□ -1.29
VPS28-216ENST00000533806 SS18L2Q9UHA2 77 aa7□□□□□ -1.29
VPS28-216ENST00000533806 A0A0U1RQV1 116 aa6.99□□□□□ -1.29
VPS28-216ENST00000533806 ANKRD29Q8N6D5 301 aa6.99□□□□□ -1.29
VPS28-216ENST00000533806 BAALC-AS2P0C853 105 aa6.97□□□□□ -1.29
VPS28-216ENST00000533806 LCE2AQ5TA79 106 aaPredicted RBP6.97□□□□□ -1.29
VPS28-216ENST00000533806 A0A1B0GV72 72 aa6.96□□□□□ -1.3
VPS28-216ENST00000533806 RPL37P61927 97 aaKnown RBP6.96□□□□□ -1.3
VPS28-216ENST00000533806 ATXN8Q156A1 80 aa6.96□□□□□ -1.3
VPS28-216ENST00000533806 PCOTHQ58A44 107 aa6.96□□□□□ -1.3
VPS28-216ENST00000533806 CCKP06307 115 aa6.94□□□□□ -1.3
VPS28-216ENST00000533806 RBM3P98179 157 aaKnown RBP6.94□□□□□ -1.3
VPS28-216ENST00000533806 BATFQ16520 125 aa6.93□□□□□ -1.3
VPS28-216ENST00000533806 TRBV20-1A0A075B6N2 111 aa6.92□□□□□ -1.3
VPS28-216ENST00000533806 TAX1BP3O14907 124 aa6.92□□□□□ -1.3
VPS28-216ENST00000533806 OBSCN-AS1Q96MR7 158 aa6.92□□□□□ -1.3
VPS28-216ENST00000533806 LINC00472Q9H8W2 130 aa6.91□□□□□ -1.3
VPS28-216ENST00000533806 C9orf118A6NHY6 69 aa6.9□□□□□ -1.3
VPS28-216ENST00000533806 DSCR8Q96T75 97 aa6.9□□□□□ -1.3
VPS28-216ENST00000533806 KRTAP19-2Q3LHN2 52 aa6.89□□□□□ -1.31
VPS28-216ENST00000533806 LYRM7Q5U5X0 104 aa6.89□□□□□ -1.31
VPS28-216ENST00000533806 C9JAW5 83 aa6.88□□□□□ -1.31
VPS28-216ENST00000533806 LCE2CQ5TA81 110 aa6.88□□□□□ -1.31
VPS28-216ENST00000533806 Q75L30 129 aa6.88□□□□□ -1.31
VPS28-216ENST00000533806 A0A1W2PPM0 123 aa6.87□□□□□ -1.31
VPS28-216ENST00000533806 JMJD7-PLA2G4BH0Y9G9 81 aa6.87□□□□□ -1.31
VPS28-216ENST00000533806 LOC110117498A0A087WWA1 95 aa6.86□□□□□ -1.31
VPS28-216ENST00000533806 Q6ZQT0 140 aa6.86□□□□□ -1.31
VPS28-216ENST00000533806 C20orf166-AS1Q96NR2 134 aa6.86□□□□□ -1.31
VPS28-216ENST00000533806 IGKV4-1P06312 121 aa6.85□□□□□ -1.31
VPS28-216ENST00000533806 A8MUU9 505 aa6.84□□□□□ -1.31
VPS28-216ENST00000533806 DEFB116Q30KQ4 102 aa6.84□□□□□ -1.31
VPS28-216ENST00000533806 VPS25Q9BRG1 176 aa6.84□□□□□ -1.31
VPS28-216ENST00000533806 C21orf62-AS1Q17RA5 79 aa6.83□□□□□ -1.32
VPS28-216ENST00000533806 SIGMAR1Q99720 223 aa6.83□□□□□ -1.32
VPS28-216ENST00000533806 A0A1B0GW54 56 aa6.82□□□□□ -1.32
VPS28-216ENST00000533806 KRTAP16-1A8MUX0 517 aa6.82□□□□□ -1.32
VPS28-216ENST00000533806 PDE6GP18545 87 aa6.82□□□□□ -1.32
VPS28-216ENST00000533806 DSCR10P59022 87 aa6.82□□□□□ -1.32
VPS28-216ENST00000533806 NOTCH2NLQ7Z3S9 236 aa6.82□□□□□ -1.32
VPS28-216ENST00000533806 LINC00313P59037 77 aa6.81□□□□□ -1.32
VPS28-216ENST00000533806 H3BT86 120 aa6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms