RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 SPRR1AP35321 89 aa8.98□□□□□ -0.97
CPSF1-208ENST00000532560 UBR4Q5T4S7 5183 aa8.98□□□□□ -0.97
CPSF1-208ENST00000532560 KRTAP4-16G5E9R7 235 aaPredicted RBP8.95□□□□□ -0.98
CPSF1-208ENST00000532560 IGLV6-57P01721 117 aa8.95□□□□□ -0.98
CPSF1-208ENST00000532560 HMCN2Q8NDA2 5059 aa8.94□□□□□ -0.98
CPSF1-208ENST00000532560 S100A7L2Q5SY68 101 aa8.94□□□□□ -0.98
CPSF1-208ENST00000532560 OR13C6PQ8NH95 151 aa8.94□□□□□ -0.98
CPSF1-208ENST00000532560 FAM218AQ96MZ4 157 aa8.94□□□□□ -0.98
CPSF1-208ENST00000532560 IMUPQ9GZP8 106 aa8.94□□□□□ -0.98
CPSF1-208ENST00000532560 ETDCA0A1B0GVM5 59 aa8.93□□□□□ -0.98
CPSF1-208ENST00000532560 HIGD2AQ9BW72 106 aa8.93□□□□□ -0.98
CPSF1-208ENST00000532560 A0A087X002 238 aa8.92□□□□□ -0.98
CPSF1-208ENST00000532560 TRBV7-7A0A0K0K1E9 115 aa8.92□□□□□ -0.98
CPSF1-208ENST00000532560 H3BQ85 93 aa8.92□□□□□ -0.98
CPSF1-208ENST00000532560 CRYGAP11844 174 aa8.92□□□□□ -0.98
CPSF1-208ENST00000532560 FAM229BQ4G0N7 80 aa8.92□□□□□ -0.98
CPSF1-208ENST00000532560 LINC00643Q86TS7 51 aa8.91□□□□□ -0.98
CPSF1-208ENST00000532560 OBSCN-AS1Q96MR7 158 aa8.91□□□□□ -0.98
CPSF1-208ENST00000532560 TRAV23DV6A0A075B6W5 121 aa8.9□□□□□ -0.98
CPSF1-208ENST00000532560 ORMDL1Q9P0S3 153 aa8.9□□□□□ -0.98
CPSF1-208ENST00000532560 B5MCH6 92 aa8.89□□□□□ -0.99
CPSF1-208ENST00000532560 ANAPC11Q9NYG5 84 aa8.89□□□□□ -0.99
CPSF1-208ENST00000532560 Q6ZRX8 168 aa8.88□□□□□ -0.99
CPSF1-208ENST00000532560 ZNF706Q9Y5V0 76 aaPredicted RBP8.88□□□□□ -0.99
CPSF1-208ENST00000532560 JMJD7-PLA2G4BH0Y9G9 81 aa8.87□□□□□ -0.99
CPSF1-208ENST00000532560 ZNF73O43830 326 aaPredicted RBP8.87□□□□□ -0.99
CPSF1-208ENST00000532560 SMCR5Q8TEV8 140 aa8.87□□□□□ -0.99
CPSF1-208ENST00000532560 SPRR4Q96PI1 79 aa8.87□□□□□ -0.99
CPSF1-208ENST00000532560 ANAPC13Q9BS18 74 aa8.87□□□□□ -0.99
CPSF1-208ENST00000532560 TMEM256-PLSCR3K7ERE1 68 aa8.86□□□□□ -0.99
CPSF1-208ENST00000532560 KRTAP13-2Q52LG2 175 aa8.86□□□□□ -0.99
CPSF1-208ENST00000532560 TYMSOSQ8TAI1 123 aa8.86□□□□□ -0.99
CPSF1-208ENST00000532560 GHRHP01286 108 aa8.85□□□□□ -0.99
CPSF1-208ENST00000532560 NDUFV3P56181 108 aaKnown RBP8.85□□□□□ -0.99
CPSF1-208ENST00000532560 Q9BRP9 147 aa8.84□□□□□ -0.99
CPSF1-208ENST00000532560 TRBV7-6A0A0J9YX20 115 aa8.82□□□□□ -1
CPSF1-208ENST00000532560 GAGE2AQ6NT46 116 aa8.82□□□□□ -1
CPSF1-208ENST00000532560 ERC2-IT1O76042 136 aa8.81□□□□□ -1
CPSF1-208ENST00000532560 LINC00483Q53H64 154 aa8.81□□□□□ -1
CPSF1-208ENST00000532560 LINC00575Q6W349 94 aa8.8□□□□□ -1
CPSF1-208ENST00000532560 C6orf99Q4VX62 202 aa8.79□□□□□ -1
CPSF1-208ENST00000532560 C3orf22Q8N5N4 141 aa8.79□□□□□ -1
CPSF1-208ENST00000532560 CCKP06307 115 aa8.78□□□□□ -1
CPSF1-208ENST00000532560 LINC00304Q8N9R0 145 aa8.78□□□□□ -1
CPSF1-208ENST00000532560 hADV29S1A0JD25 119 aa8.77□□□□□ -1.01
CPSF1-208ENST00000532560 PDE6GP18545 87 aa8.77□□□□□ -1.01
CPSF1-208ENST00000532560 ELOF1P60002 83 aaKnown RBP8.77□□□□□ -1.01
CPSF1-208ENST00000532560 Q6JHZ5 121 aa8.77□□□□□ -1.01
CPSF1-208ENST00000532560 C14orf132Q9NPU4 83 aa8.77□□□□□ -1.01
CPSF1-208ENST00000532560 ATP5EP2Q5VTU8 51 aa8.76□□□□□ -1.01
CPSF1-208ENST00000532560 DHRS4-AS1Q9P1J3 65 aa8.76□□□□□ -1.01
CPSF1-208ENST00000532560 COX7BP24311 80 aa8.75□□□□□ -1.01
CPSF1-208ENST00000532560 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.73□□□□□ -1.01
CPSF1-208ENST00000532560 LOC110117498A0A087WWA1 95 aa8.72□□□□□ -1.01
CPSF1-208ENST00000532560 ST20-AS1Q8NBB2 130 aa8.71□□□□□ -1.02
CPSF1-208ENST00000532560 RBM3P98179 157 aaKnown RBP8.7□□□□□ -1.02
CPSF1-208ENST00000532560 SPAG11AQ6PDA7 123 aa8.7□□□□□ -1.02
CPSF1-208ENST00000532560 FAM236AA0A1B0GUQ0 79 aa8.69□□□□□ -1.02
CPSF1-208ENST00000532560 FAM236BA0A1B0GV22 79 aa8.69□□□□□ -1.02
CPSF1-208ENST00000532560 SPRR1BP22528 89 aa8.69□□□□□ -1.02
CPSF1-208ENST00000532560 Q8NBF4 154 aa8.69□□□□□ -1.02
CPSF1-208ENST00000532560 LINC00846Q9NV44 126 aa8.69□□□□□ -1.02
CPSF1-208ENST00000532560 IGLV9-49A0A0B4J1Y8 123 aa8.68□□□□□ -1.02
CPSF1-208ENST00000532560 ATOX1O00244 68 aa8.68□□□□□ -1.02
CPSF1-208ENST00000532560 HIST1H4AP62805 103 aaKnown RBP8.68□□□□□ -1.02
CPSF1-208ENST00000532560 MOBPQ13875 183 aa8.68□□□□□ -1.02
CPSF1-208ENST00000532560 PRR4Q16378 134 aa8.67□□□□□ -1.02
CPSF1-208ENST00000532560 SSBP3-AS1Q7Z2R9 100 aa8.67□□□□□ -1.02
CPSF1-208ENST00000532560 UBL5Q9BZL1 73 aa8.67□□□□□ -1.02
CPSF1-208ENST00000532560 DSCR8Q96T75 97 aa8.66□□□□□ -1.02
CPSF1-208ENST00000532560 LAMTOR3Q9UHA4 124 aa8.66□□□□□ -1.02
CPSF1-208ENST00000532560 LRP2P98164 4655 aa8.65□□□□□ -1.02
CPSF1-208ENST00000532560 C4orf48Q5BLP8 95 aa8.65□□□□□ -1.02
CPSF1-208ENST00000532560 Q6ZQT0 140 aa8.65□□□□□ -1.02
CPSF1-208ENST00000532560 Q6ZQY7 126 aa8.65□□□□□ -1.02
CPSF1-208ENST00000532560 RNF213Q63HN8 5207 aa8.64□□□□□ -1.03
CPSF1-208ENST00000532560 UQCRQO14949 82 aa8.63□□□□□ -1.03
CPSF1-208ENST00000532560 SPINK1P00995 79 aa8.63□□□□□ -1.03
CPSF1-208ENST00000532560 C9orf153Q5TBE3 101 aa8.63□□□□□ -1.03
CPSF1-208ENST00000532560 IGLV5-48A0A075B6I7 105 aa8.62□□□□□ -1.03
CPSF1-208ENST00000532560 RETNLBQ9BQ08 111 aa8.62□□□□□ -1.03
CPSF1-208ENST00000532560 CCDC179H3BU77 68 aa8.61□□□□□ -1.03
CPSF1-208ENST00000532560 RPS29P62273 56 aaKnown RBP8.61□□□□□ -1.03
CPSF1-208ENST00000532560 LINC01547P58512 204 aaPredicted RBP8.6□□□□□ -1.03
CPSF1-208ENST00000532560 TRBV7-4A0A0J9YYF1 115 aa8.59□□□□□ -1.03
CPSF1-208ENST00000532560 DEFB105AQ8NG35 78 aa8.59□□□□□ -1.03
CPSF1-208ENST00000532560 IGKV3D-7A0A0C4DH55 119 aa8.58□□□□□ -1.04
CPSF1-208ENST00000532560 COX7CP15954 63 aa8.58□□□□□ -1.04
CPSF1-208ENST00000532560 A0A1B0GW54 56 aa8.57□□□□□ -1.04
CPSF1-208ENST00000532560 CXCL6P80162 114 aa8.56□□□□□ -1.04
CPSF1-208ENST00000532560 SMIM29Q86T20 159 aa8.56□□□□□ -1.04
CPSF1-208ENST00000532560 LPAP08519 4548 aa8.56□□□□□ -1.04
CPSF1-208ENST00000532560 FP248Q71RG6 208 aaPredicted RBP8.55□□□□□ -1.04
CPSF1-208ENST00000532560 IGLV7-46A0A075B6I9 117 aa8.54□□□□□ -1.04
CPSF1-208ENST00000532560 Q8N377 158 aa8.54□□□□□ -1.04
CPSF1-208ENST00000532560 SERP2Q8N6R1 65 aa8.54□□□□□ -1.04
CPSF1-208ENST00000532560 TPRXLQ17RH7 258 aa8.53□□□□□ -1.04
CPSF1-208ENST00000532560 SMIM20Q8N5G0 67 aa8.52□□□□□ -1.05
CPSF1-208ENST00000532560 Q6ZVQ6 151 aa8.51□□□□□ -1.05
CPSF1-208ENST00000532560 CD164Q04900 197 aa8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 438.3 ms