RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 SCXQ7RTU7 201 aa11.69□□□□□ -0.54
VPS28-207ENST00000526977 C3orf22Q8N5N4 141 aa11.69□□□□□ -0.54
VPS28-207ENST00000526977 DNAH8Q96JB1 4490 aa11.67□□□□□ -0.54
VPS28-207ENST00000526977 UBL5Q9BZL1 73 aa11.66□□□□□ -0.54
VPS28-207ENST00000526977 FAM236AA0A1B0GUQ0 79 aa11.65□□□□□ -0.54
VPS28-207ENST00000526977 FAM236BA0A1B0GV22 79 aa11.65□□□□□ -0.54
VPS28-207ENST00000526977 PKHD1P08F94 4074 aa11.65□□□□□ -0.54
VPS28-207ENST00000526977 H0Y9J4 135 aa11.64□□□□□ -0.55
VPS28-207ENST00000526977 HIGD2AQ9BW72 106 aa11.64□□□□□ -0.55
VPS28-207ENST00000526977 SMIM29Q86T20 159 aa11.62□□□□□ -0.55
VPS28-207ENST00000526977 BCE1O60756 84 aa11.62□□□□□ -0.55
VPS28-207ENST00000526977 ATP5EP2Q5VTU8 51 aa11.6□□□□□ -0.55
VPS28-207ENST00000526977 PSORS1C2Q9UIG4 136 aa11.6□□□□□ -0.55
VPS28-207ENST00000526977 LRP1BQ9NZR2 4599 aa11.6□□□□□ -0.55
VPS28-207ENST00000526977 Q6ZVQ6 151 aa11.6□□□□□ -0.55
VPS28-207ENST00000526977 HAMPP81172 84 aa11.59□□□□□ -0.55
VPS28-207ENST00000526977 HIST1H4AP62805 103 aaKnown RBP11.59□□□□□ -0.55
VPS28-207ENST00000526977 UBE2AP49459 152 aa11.57□□□□□ -0.56
VPS28-207ENST00000526977 DYNC1H1Q14204 4646 aaKnown RBP11.57□□□□□ -0.56
VPS28-207ENST00000526977 A0A087WVE0 104 aa11.57□□□□□ -0.56
VPS28-207ENST00000526977 C1orf137Q5JT78 98 aa11.57□□□□□ -0.56
VPS28-207ENST00000526977 KRTAP13-1Q8IUC0 172 aa11.55□□□□□ -0.56
VPS28-207ENST00000526977 A0A1W2PNM2 257 aa11.54□□□□□ -0.56
VPS28-207ENST00000526977 SRRM2Q9UQ35 2752 aaKnown RBP11.53□□□□□ -0.56
VPS28-207ENST00000526977 CCDC179H3BU77 68 aa11.52□□□□□ -0.57
VPS28-207ENST00000526977 SPRR1BP22528 89 aa11.51□□□□□ -0.57
VPS28-207ENST00000526977 F8WEM9 126 aa11.5□□□□□ -0.57
VPS28-207ENST00000526977 ZNF861PO60384 105 aa11.49□□□□□ -0.57
VPS28-207ENST00000526977 Q8NBF4 154 aa11.49□□□□□ -0.57
VPS28-207ENST00000526977 A0A1B0GW54 56 aa11.48□□□□□ -0.57
VPS28-207ENST00000526977 IGLV7-43P04211 117 aa11.48□□□□□ -0.57
VPS28-207ENST00000526977 CXCL6P80162 114 aa11.48□□□□□ -0.57
VPS28-207ENST00000526977 IGLV8-61A0A075B6I0 122 aa11.48□□□□□ -0.57
VPS28-207ENST00000526977 SPRR4Q96PI1 79 aa11.47□□□□□ -0.57
VPS28-207ENST00000526977 NREPQ16612 68 aa11.47□□□□□ -0.57
VPS28-207ENST00000526977 A0A0G2JQZ4 141 aa11.46□□□□□ -0.57
VPS28-207ENST00000526977 ATOX1O00244 68 aa11.46□□□□□ -0.57
VPS28-207ENST00000526977 IGFL1Q6UW32 110 aa11.46□□□□□ -0.57
VPS28-207ENST00000526977 CDK2AP2O75956 126 aa11.44□□□□□ -0.58
VPS28-207ENST00000526977 APOBP04114 4563 aaKnown RBP11.42□□□□□ -0.58
VPS28-207ENST00000526977 CRYGAP11844 174 aa11.42□□□□□ -0.58
VPS28-207ENST00000526977 SMR3BP02814 79 aaPredicted RBP11.42□□□□□ -0.58
VPS28-207ENST00000526977 RPL37AP61513 92 aaKnown RBP11.41□□□□□ -0.58
VPS28-207ENST00000526977 ZNF706Q9Y5V0 76 aaPredicted RBP11.38□□□□□ -0.59
VPS28-207ENST00000526977 COX7CP15954 63 aa11.38□□□□□ -0.59
VPS28-207ENST00000526977 SVIPQ8NHG7 77 aa11.38□□□□□ -0.59
VPS28-207ENST00000526977 UQCRQO14949 82 aa11.37□□□□□ -0.59
VPS28-207ENST00000526977 BPY2O14599 106 aa11.36□□□□□ -0.59
VPS28-207ENST00000526977 SERP2Q8N6R1 65 aa11.35□□□□□ -0.59
VPS28-207ENST00000526977 VPS13BQ7Z7G8 4022 aa11.34□□□□□ -0.59
VPS28-207ENST00000526977 LINC00483Q53H64 154 aa11.34□□□□□ -0.59
VPS28-207ENST00000526977 Q8N9L7 120 aa11.32□□□□□ -0.6
VPS28-207ENST00000526977 FAM229AH3BQW9 127 aa11.31□□□□□ -0.6
VPS28-207ENST00000526977 EPPK1P58107 5090 aaKnown RBP11.31□□□□□ -0.6
VPS28-207ENST00000526977 IGKV4-1P06312 121 aa11.3□□□□□ -0.6
VPS28-207ENST00000526977 A0A087WSZ3 146 aa11.3□□□□□ -0.6
VPS28-207ENST00000526977 SPINK6Q6UWN8 80 aa11.3□□□□□ -0.6
VPS28-207ENST00000526977 PLA2G1BP04054 148 aaKnown RBP11.29□□□□□ -0.6
VPS28-207ENST00000526977 C9orf153Q5TBE3 101 aa11.29□□□□□ -0.6
VPS28-207ENST00000526977 IGLV9-49A0A0B4J1Y8 123 aa11.28□□□□□ -0.6
VPS28-207ENST00000526977 KRTAP10-4P60372 401 aaPredicted RBP11.28□□□□□ -0.6
VPS28-207ENST00000526977 ANAPC11Q9NYG5 84 aa11.26□□□□□ -0.61
VPS28-207ENST00000526977 DSCR10P59022 87 aa11.25□□□□□ -0.61
VPS28-207ENST00000526977 FAT1Q14517 4588 aa11.24□□□□□ -0.61
VPS28-207ENST00000526977 RYR1P21817 5038 aa11.23□□□□□ -0.61
VPS28-207ENST00000526977 HSPG2P98160 4391 aa11.21□□□□□ -0.61
VPS28-207ENST00000526977 DEFB116Q30KQ4 102 aa11.21□□□□□ -0.62
VPS28-207ENST00000526977 Q5VSD8 79 aa11.21□□□□□ -0.62
VPS28-207ENST00000526977 SS18L2Q9UHA2 77 aa11.21□□□□□ -0.62
VPS28-207ENST00000526977 TRAV7A0A075B6U4 112 aa11.2□□□□□ -0.62
VPS28-207ENST00000526977 SMIM20Q8N5G0 67 aa11.19□□□□□ -0.62
VPS28-207ENST00000526977 CYSTM1Q9H1C7 97 aa11.19□□□□□ -0.62
VPS28-207ENST00000526977 MOBPQ13875 183 aa11.18□□□□□ -0.62
VPS28-207ENST00000526977 FAM229BQ4G0N7 80 aa11.18□□□□□ -0.62
VPS28-207ENST00000526977 KIAA1109Q2LD37 5005 aa11.17□□□□□ -0.62
VPS28-207ENST00000526977 K7EQZ3 153 aa11.17□□□□□ -0.62
VPS28-207ENST00000526977 Q8N1X5 172 aa11.17□□□□□ -0.62
VPS28-207ENST00000526977 KRTAP1-4P0C5Y4 121 aa11.16□□□□□ -0.62
VPS28-207ENST00000526977 LINC00472Q9H8W2 130 aa11.16□□□□□ -0.62
VPS28-207ENST00000526977 HRCT1Q6UXD1 115 aa11.13□□□□□ -0.63
VPS28-207ENST00000526977 A0A087X002 238 aa11.1□□□□□ -0.63
VPS28-207ENST00000526977 C20orf197Q8N268 126 aa11.1□□□□□ -0.63
VPS28-207ENST00000526977 SSBP3-AS1Q7Z2R9 100 aa11.09□□□□□ -0.63
VPS28-207ENST00000526977 OCR1Q9BZK8 76 aa11.09□□□□□ -0.63
VPS28-207ENST00000526977 KRTAP17-1Q9BYP8 105 aa11.08□□□□□ -0.64
VPS28-207ENST00000526977 KRTAP13-2Q52LG2 175 aa11.06□□□□□ -0.64
VPS28-207ENST00000526977 Q96NJ1 140 aa11.05□□□□□ -0.64
VPS28-207ENST00000526977 A8MWP4 228 aa11.04□□□□□ -0.64
VPS28-207ENST00000526977 HCG22E2RYF7 251 aa11.04□□□□□ -0.64
VPS28-207ENST00000526977 PRR15Q8IV56 129 aa11.04□□□□□ -0.64
VPS28-207ENST00000526977 J3KT08 172 aa11.03□□□□□ -0.64
VPS28-207ENST00000526977 KLKP1Q107X0 134 aa11.02□□□□□ -0.64
VPS28-207ENST00000526977 TYMSOSQ8TAI1 123 aa11.01□□□□□ -0.65
VPS28-207ENST00000526977 PRR26Q8N8Z3 221 aa11.01□□□□□ -0.65
VPS28-207ENST00000526977 SNURFQ9Y675 71 aa11□□□□□ -0.65
VPS28-207ENST00000526977 BIRC6Q9NR09 4857 aa11□□□□□ -0.65
VPS28-207ENST00000526977 TMEM258P61165 79 aa10.99□□□□□ -0.65
VPS28-207ENST00000526977 CD164Q04900 197 aa10.98□□□□□ -0.65
VPS28-207ENST00000526977 WFDC13Q8IUB5 93 aa10.97□□□□□ -0.65
VPS28-207ENST00000526977 PKHD1L1Q86WI1 4243 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 229.2 ms