RNA–Protein interactions for RNA: ENST00000525685.5

CD44-219, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 728 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-219ENST00000525685 ENHOQ6UWT2 76 aa2□□□□□ -2.09
CD44-219ENST00000525685 LCA10Q71F78 164 aa2□□□□□ -2.09
CD44-219ENST00000525685 PHF5AQ7RTV0 110 aaKnown RBP2□□□□□ -2.09
CD44-219ENST00000525685 FAM19A3Q7Z5A8 133 aa2□□□□□ -2.09
CD44-219ENST00000525685 LINC00304Q8N9R0 145 aa2□□□□□ -2.09
CD44-219ENST00000525685 LOC389332A0A1B0GUA5 103 aa1.99□□□□□ -2.09
CD44-219ENST00000525685 PSPHP1O15172 72 aa1.99□□□□□ -2.09
CD44-219ENST00000525685 PSCAO43653 123 aa1.99□□□□□ -2.09
CD44-219ENST00000525685 PPP1R17O96001 155 aa1.99□□□□□ -2.09
CD44-219ENST00000525685 ANGP03950 147 aaKnown RBP1.99□□□□□ -2.09
CD44-219ENST00000525685 COX8AP10176 69 aa1.99□□□□□ -2.09
CD44-219ENST00000525685 CKS2P33552 79 aa1.99□□□□□ -2.09
CD44-219ENST00000525685 FUSP35637 526 aaKnown RBP eCLIP1.99□□□□□ -2.09
CD44-219ENST00000525685 C6orf99Q4VX62 202 aa1.99□□□□□ -2.09
CD44-219ENST00000525685 C2orf91Q6ZV80 131 aa1.99□□□□□ -2.09
CD44-219ENST00000525685 FP248Q71RG6 208 aaPredicted RBP1.99□□□□□ -2.09
CD44-219ENST00000525685 ORMDL3Q8N138 153 aa1.99□□□□□ -2.09
CD44-219ENST00000525685 LINC00269Q8N2A0 174 aa1.99□□□□□ -2.09
CD44-219ENST00000525685 LINC00337Q8N6G1 96 aa1.99□□□□□ -2.09
CD44-219ENST00000525685 UBE2WQ96B02 151 aa1.99□□□□□ -2.09
CD44-219ENST00000525685 SMIM2Q9BVW6 85 aa1.99□□□□□ -2.09
CD44-219ENST00000525685 TRAPPC1Q9Y5R8 145 aa1.99□□□□□ -2.09
CD44-219ENST00000525685 PKD1P98161 4303 aa1.99□□□□□ -2.09
CD44-219ENST00000525685 LRP1BQ9NZR2 4599 aa1.99□□□□□ -2.09
CD44-219ENST00000525685 DNAH8Q96JB1 4490 aa1.99□□□□□ -2.09
CD44-219ENST00000525685 KIAA1109Q2LD37 5005 aa1.98□□□□□ -2.09
CD44-219ENST00000525685 IGLV10-54A0A075B6I4 117 aa1.98□□□□□ -2.09
CD44-219ENST00000525685 IGKV3OR2-268A0A0C4DH90 116 aa1.98□□□□□ -2.09
CD44-219ENST00000525685 hADV29S1A0JD25 119 aa1.98□□□□□ -2.09
CD44-219ENST00000525685 C16orf90A8MZG2 172 aa1.98□□□□□ -2.09
CD44-219ENST00000525685 TMEM256-PLSCR3K7ERE1 68 aa1.98□□□□□ -2.09
CD44-219ENST00000525685 ATP5EP56381 51 aaPredicted RBP1.98□□□□□ -2.09
CD44-219ENST00000525685 LINC00313P59037 77 aa1.98□□□□□ -2.09
CD44-219ENST00000525685 MIAQ16674 131 aa1.98□□□□□ -2.09
CD44-219ENST00000525685 KRTAP26-1Q6PEX3 210 aa1.98□□□□□ -2.09
CD44-219ENST00000525685 BAGE3Q86Y29 109 aa1.98□□□□□ -2.09
CD44-219ENST00000525685 Q8N814 137 aa1.98□□□□□ -2.09
CD44-219ENST00000525685 HIGD1BQ9P298 99 aa1.98□□□□□ -2.09
CD44-219ENST00000525685 UBE2D4Q9Y2X8 147 aa1.98□□□□□ -2.09
CD44-219ENST00000525685 APOBP04114 4563 aaKnown RBP1.98□□□□□ -2.09
CD44-219ENST00000525685 IGHV6-1A0A0B4J1U7 121 aa1.97□□□□□ -2.09
CD44-219ENST00000525685 COX7A2LO14548 114 aa1.97□□□□□ -2.09
CD44-219ENST00000525685 LECT2O14960 151 aa1.97□□□□□ -2.09
CD44-219ENST00000525685 HBDP02042 147 aa1.97□□□□□ -2.09
CD44-219ENST00000525685 IGLV7-43P04211 117 aa1.97□□□□□ -2.09
CD44-219ENST00000525685 ACYP1P07311 99 aa1.97□□□□□ -2.09
CD44-219ENST00000525685 SCGB1C2P0DMR2 95 aa1.97□□□□□ -2.09
CD44-219ENST00000525685 FCER1GP30273 86 aa1.97□□□□□ -2.09
CD44-219ENST00000525685 HIST1H4AP62805 103 aaKnown RBP1.97□□□□□ -2.09
CD44-219ENST00000525685 RPL39P62891 51 aaKnown RBP1.97□□□□□ -2.09
CD44-219ENST00000525685 C5orf38Q86SI9 138 aa1.97□□□□□ -2.09
CD44-219ENST00000525685 SERP2Q8N6R1 65 aa1.97□□□□□ -2.09
CD44-219ENST00000525685 Q8N8P6 123 aa1.97□□□□□ -2.09
CD44-219ENST00000525685 C1orf64Q8NEQ6 169 aa1.97□□□□□ -2.09
CD44-219ENST00000525685 TP73-AS1Q9UF72 201 aa1.97□□□□□ -2.09
CD44-219ENST00000525685 MUC19Q7Z5P9 8384 aa1.96□□□□□ -2.1
CD44-219ENST00000525685 LINC00959A0A1B0GUT2 108 aa1.96□□□□□ -2.1
CD44-219ENST00000525685 IFI27P40305 119 aaPredicted RBP1.96□□□□□ -2.1
CD44-219ENST00000525685 UBE2BP63146 152 aa1.96□□□□□ -2.1
CD44-219ENST00000525685 TIMM21Q9BVV7 248 aa1.96□□□□□ -2.1
CD44-219ENST00000525685 NXT2Q9NPJ8 142 aaKnown RBP1.96□□□□□ -2.1
CD44-219ENST00000525685 CDC42SE2Q9NRR3 84 aa1.96□□□□□ -2.1
CD44-219ENST00000525685 LINC01546A6NGU7 62 aa1.95□□□□□ -2.1
CD44-219ENST00000525685 K7EMI3 77 aa1.95□□□□□ -2.1
CD44-219ENST00000525685 K7ERJ3 54 aa1.95□□□□□ -2.1
CD44-219ENST00000525685 TIMM17BO60830 172 aa1.95□□□□□ -2.1
CD44-219ENST00000525685 INAFM2P0DMQ5 153 aa1.95□□□□□ -2.1
CD44-219ENST00000525685 XCL1P47992 114 aa1.95□□□□□ -2.1
CD44-219ENST00000525685 SS18Q15532 418 aa1.95□□□□□ -2.1
CD44-219ENST00000525685 TMEM170BQ5T4T1 132 aa1.95□□□□□ -2.1
CD44-219ENST00000525685 C7orf65Q6ZTY9 151 aa1.95□□□□□ -2.1
CD44-219ENST00000525685 DIRC1Q969H9 104 aa1.95□□□□□ -2.1
CD44-219ENST00000525685 HSPG2P98160 4391 aa1.95□□□□□ -2.1
CD44-219ENST00000525685 PKHD1P08F94 4074 aa1.95□□□□□ -2.1
CD44-219ENST00000525685 ABCA13Q86UQ4 5058 aa1.94□□□□□ -2.1
CD44-219ENST00000525685 GVQW2A0A096LPI5 108 aaPredicted RBP1.94□□□□□ -2.1
CD44-219ENST00000525685 TRAV16A0A0A6YYK6 109 aaPredicted RBP1.94□□□□□ -2.1
CD44-219ENST00000525685 IGIPA6NJ69 53 aa1.94□□□□□ -2.1
CD44-219ENST00000525685 UBE2D1P51668 147 aa1.94□□□□□ -2.1
CD44-219ENST00000525685 CNBPP62633 177 aaKnown RBP1.94□□□□□ -2.1
CD44-219ENST00000525685 HAMPP81172 84 aa1.94□□□□□ -2.1
CD44-219ENST00000525685 LINC01554Q52M75 96 aa1.94□□□□□ -2.1
CD44-219ENST00000525685 LINC00643Q86TS7 51 aa1.94□□□□□ -2.1
CD44-219ENST00000525685 TMEM141Q96I45 108 aa1.94□□□□□ -2.1
CD44-219ENST00000525685 AMELXQ99217 191 aa1.94□□□□□ -2.1
CD44-219ENST00000525685 PCLOQ9Y6V0 5065 aa1.93□□□□□ -2.1
CD44-219ENST00000525685 NDUFC1O43677 76 aa1.93□□□□□ -2.1
CD44-219ENST00000525685 BCE1O60756 84 aa1.93□□□□□ -2.1
CD44-219ENST00000525685 IGLV6-57P01721 117 aa1.93□□□□□ -2.1
CD44-219ENST00000525685 CCKP06307 115 aa1.93□□□□□ -2.1
CD44-219ENST00000525685 SPAG11BQ08648 103 aa1.93□□□□□ -2.1
CD44-219ENST00000525685 ATP11AUNQ6ZP68 121 aa1.93□□□□□ -2.1
CD44-219ENST00000525685 SDIM1Q6ZPB5 146 aa1.93□□□□□ -2.1
CD44-219ENST00000525685 Q6ZSA8 131 aa1.93□□□□□ -2.1
CD44-219ENST00000525685 SCXQ7RTU7 201 aa1.93□□□□□ -2.1
CD44-219ENST00000525685 C9orf163Q8N9P6 203 aa1.93□□□□□ -2.1
CD44-219ENST00000525685 SCGB3A1Q96QR1 104 aa1.93□□□□□ -2.1
CD44-219ENST00000525685 ZNF706Q9Y5V0 76 aaPredicted RBP1.93□□□□□ -2.1
CD44-219ENST00000525685 IGHV3-64A0A075B6Q5 118 aa1.92□□□□□ -2.1
CD44-219ENST00000525685 A0A1B0GW54 56 aa1.92□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms