RNA–Protein interactions for RNA: ENST00000515311.5

LSM6-207, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 4

Gene LSM6, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-207ENST00000515311 PPDPFLQ8WWR9 84 aa12.45□□□□□ -0.42
LSM6-207ENST00000515311 TRBV20-1A0A075B6N2 111 aa12.44□□□□□ -0.42
LSM6-207ENST00000515311 TCL1BO95988 128 aa12.43□□□□□ -0.42
LSM6-207ENST00000515311 FABP2P12104 132 aa12.43□□□□□ -0.42
LSM6-207ENST00000515311 ATXN8Q156A1 80 aa12.43□□□□□ -0.42
LSM6-207ENST00000515311 Q8N377 158 aa12.43□□□□□ -0.42
LSM6-207ENST00000515311 PRR26Q8N8Z3 221 aa12.43□□□□□ -0.42
LSM6-207ENST00000515311 LRP1Q07954 4544 aaKnown RBP12.42□□□□□ -0.42
LSM6-207ENST00000515311 GHRHP01286 108 aa12.42□□□□□ -0.42
LSM6-207ENST00000515311 FAT3Q8TDW7 4589 aa12.4□□□□□ -0.42
LSM6-207ENST00000515311 KRTAP13-2Q52LG2 175 aa12.4□□□□□ -0.42
LSM6-207ENST00000515311 H3BQ85 93 aa12.39□□□□□ -0.43
LSM6-207ENST00000515311 KRTAP10-8P60410 259 aa12.39□□□□□ -0.43
LSM6-207ENST00000515311 LAMTOR3Q9UHA4 124 aa12.39□□□□□ -0.43
LSM6-207ENST00000515311 SMIM29Q86T20 159 aa12.38□□□□□ -0.43
LSM6-207ENST00000515311 ORMDL1Q9P0S3 153 aa12.38□□□□□ -0.43
LSM6-207ENST00000515311 PCLOQ9Y6V0 5065 aa12.38□□□□□ -0.43
LSM6-207ENST00000515311 MT1HL1P0DM35 61 aa12.37□□□□□ -0.43
LSM6-207ENST00000515311 C3orf22Q8N5N4 141 aa12.36□□□□□ -0.43
LSM6-207ENST00000515311 TYMSOSQ8TAI1 123 aa12.35□□□□□ -0.43
LSM6-207ENST00000515311 IGLV9-49A0A0B4J1Y8 123 aa12.34□□□□□ -0.43
LSM6-207ENST00000515311 SPCS1Q9Y6A9 102 aa12.33□□□□□ -0.44
LSM6-207ENST00000515311 TMEM256-PLSCR3K7ERE1 68 aa12.32□□□□□ -0.44
LSM6-207ENST00000515311 MOBPQ13875 183 aa12.32□□□□□ -0.44
LSM6-207ENST00000515311 Q8NBF4 154 aa12.32□□□□□ -0.44
LSM6-207ENST00000515311 F8WEM9 126 aa12.31□□□□□ -0.44
LSM6-207ENST00000515311 C9orf153Q5TBE3 101 aa12.31□□□□□ -0.44
LSM6-207ENST00000515311 LCE2AQ5TA79 106 aaPredicted RBP12.3□□□□□ -0.44
LSM6-207ENST00000515311 SSBP3-AS1Q7Z2R9 100 aa12.3□□□□□ -0.44
LSM6-207ENST00000515311 NDUFV3P56181 108 aaKnown RBP12.28□□□□□ -0.44
LSM6-207ENST00000515311 C9JAW5 83 aa12.27□□□□□ -0.45
LSM6-207ENST00000515311 H3BMG7 143 aa12.27□□□□□ -0.45
LSM6-207ENST00000515311 BAALC-AS2P0C853 105 aa12.27□□□□□ -0.45
LSM6-207ENST00000515311 UBE2V1Q13404 147 aa12.27□□□□□ -0.45
LSM6-207ENST00000515311 TNXBP22105 4242 aa12.26□□□□□ -0.45
LSM6-207ENST00000515311 IGLV8-61A0A075B6I0 122 aa12.26□□□□□ -0.45
LSM6-207ENST00000515311 K7EP34 96 aa12.26□□□□□ -0.45
LSM6-207ENST00000515311 DMBT1Q9UGM3 2413 aaPredicted RBP12.25□□□□□ -0.45
LSM6-207ENST00000515311 LCE2CQ5TA81 110 aa12.23□□□□□ -0.45
LSM6-207ENST00000515311 GTF2H5Q6ZYL4 71 aa12.22□□□□□ -0.45
LSM6-207ENST00000515311 LINC00304Q8N9R0 145 aa12.22□□□□□ -0.45
LSM6-207ENST00000515311 Q6JHZ5 121 aa12.21□□□□□ -0.45
LSM6-207ENST00000515311 ANKRD29Q8N6D5 301 aa12.21□□□□□ -0.45
LSM6-207ENST00000515311 H3BT86 120 aa12.2□□□□□ -0.46
LSM6-207ENST00000515311 SPAG11AQ6PDA7 123 aa12.19□□□□□ -0.46
LSM6-207ENST00000515311 CD164Q04900 197 aa12.15□□□□□ -0.46
LSM6-207ENST00000515311 IGFL1Q6UW32 110 aa12.15□□□□□ -0.46
LSM6-207ENST00000515311 MTURNQ8N3F0 131 aa12.15□□□□□ -0.46
LSM6-207ENST00000515311 SPINK1P00995 79 aa12.13□□□□□ -0.47
LSM6-207ENST00000515311 JMJD7-PLA2G4BH0Y9G9 81 aa12.12□□□□□ -0.47
LSM6-207ENST00000515311 PRO0461Q9UI25 63 aa12.12□□□□□ -0.47
LSM6-207ENST00000515311 A0A0G2JQZ4 141 aa12.11□□□□□ -0.47
LSM6-207ENST00000515311 RBM3P98179 157 aaKnown RBP12.11□□□□□ -0.47
LSM6-207ENST00000515311 A0A1B0GV72 72 aa12.1□□□□□ -0.47
LSM6-207ENST00000515311 RPS29P62273 56 aaKnown RBP12.1□□□□□ -0.47
LSM6-207ENST00000515311 OBSCN-AS1Q96MR7 158 aa12.08□□□□□ -0.48
LSM6-207ENST00000515311 TRBV7-4A0A0J9YYF1 115 aa12.07□□□□□ -0.48
LSM6-207ENST00000515311 A0A1B0GV90 55 aa12.07□□□□□ -0.48
LSM6-207ENST00000515311 DSCR8Q96T75 97 aa12.07□□□□□ -0.48
LSM6-207ENST00000515311 F8W1H4 67 aa12.06□□□□□ -0.48
LSM6-207ENST00000515311 Q6Q795 121 aa12.06□□□□□ -0.48
LSM6-207ENST00000515311 HRCT1Q6UXD1 115 aa12.06□□□□□ -0.48
LSM6-207ENST00000515311 TEN1Q86WV5 123 aa12.04□□□□□ -0.48
LSM6-207ENST00000515311 LIMD2Q9BT23 127 aa12.02□□□□□ -0.49
LSM6-207ENST00000515311 LOC110117498A0A087WWA1 95 aa12.01□□□□□ -0.49
LSM6-207ENST00000515311 TRBV7-7A0A0K0K1E9 115 aa12.01□□□□□ -0.49
LSM6-207ENST00000515311 A0A1W2PNM2 257 aa12.01□□□□□ -0.49
LSM6-207ENST00000515311 PDE6GP18545 87 aa12.01□□□□□ -0.49
LSM6-207ENST00000515311 CCKP06307 115 aa12□□□□□ -0.49
LSM6-207ENST00000515311 Q5XG85 94 aa12□□□□□ -0.49
LSM6-207ENST00000515311 C14orf132Q9NPU4 83 aa11.99□□□□□ -0.49
LSM6-207ENST00000515311 C21orf62-AS1Q17RA5 79 aa11.97□□□□□ -0.49
LSM6-207ENST00000515311 Q6ZQT0 140 aa11.97□□□□□ -0.49
LSM6-207ENST00000515311 VPS25Q9BRG1 176 aa11.92□□□□□ -0.5
LSM6-207ENST00000515311 SS18L2Q9UHA2 77 aa11.92□□□□□ -0.5
LSM6-207ENST00000515311 HERC1Q15751 4861 aa11.92□□□□□ -0.5
LSM6-207ENST00000515311 A0A087WSZ3 146 aa11.91□□□□□ -0.5
LSM6-207ENST00000515311 ASB16-AS1Q495Z4 193 aa11.91□□□□□ -0.5
LSM6-207ENST00000515311 A0A1B0GW54 56 aa11.9□□□□□ -0.5
LSM6-207ENST00000515311 LORP23490 312 aaPredicted RBP11.9□□□□□ -0.5
LSM6-207ENST00000515311 ETDBQ3ZM63 59 aa11.89□□□□□ -0.51
LSM6-207ENST00000515311 RETNLBQ9BQ08 111 aa11.88□□□□□ -0.51
LSM6-207ENST00000515311 FP248Q71RG6 208 aaPredicted RBP11.85□□□□□ -0.51
LSM6-207ENST00000515311 C1orf195Q5TG92 126 aa11.84□□□□□ -0.51
LSM6-207ENST00000515311 PRR4Q16378 134 aa11.81□□□□□ -0.52
LSM6-207ENST00000515311 IGLV7-46A0A075B6I9 117 aa11.76□□□□□ -0.53
LSM6-207ENST00000515311 Q96NJ1 140 aa11.76□□□□□ -0.53
LSM6-207ENST00000515311 LINC00472Q9H8W2 130 aa11.73□□□□□ -0.53
LSM6-207ENST00000515311 HMCN2Q8NDA2 5059 aa11.68□□□□□ -0.54
LSM6-207ENST00000515311 NREPQ16612 68 aa11.68□□□□□ -0.54
LSM6-207ENST00000515311 TPRXLQ17RH7 258 aa11.68□□□□□ -0.54
LSM6-207ENST00000515311 J3KT08 172 aa11.65□□□□□ -0.54
LSM6-207ENST00000515311 IGKV4-1P06312 121 aa11.65□□□□□ -0.54
LSM6-207ENST00000515311 KRTAP13-3Q3SY46 172 aa11.64□□□□□ -0.55
LSM6-207ENST00000515311 SIGMAR1Q99720 223 aa11.64□□□□□ -0.55
LSM6-207ENST00000515311 LINC00846Q9NV44 126 aa11.64□□□□□ -0.55
LSM6-207ENST00000515311 FAM240AA0A1B0GVK7 77 aa11.63□□□□□ -0.55
LSM6-207ENST00000515311 DEFB116Q30KQ4 102 aa11.63□□□□□ -0.55
LSM6-207ENST00000515311 ACYP1P07311 99 aa11.62□□□□□ -0.55
LSM6-207ENST00000515311 Q6ZVQ6 151 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 64.1 ms