RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 SYNE2Q8WXH0 6885 aaKnown RBP0.8□□□□□ -2.28
NUP54-208ENST00000508604 AHCTF1Q8WYP5 2266 aa0.8□□□□□ -2.28
NUP54-208ENST00000508604 SPRR1AP35321 89 aa0.8□□□□□ -2.28
NUP54-208ENST00000508604 RHPN1-AS1Q9BWJ2 59 aa0.8□□□□□ -2.28
NUP54-208ENST00000508604 DSTQ03001 7570 aaKnown RBP0.8□□□□□ -2.28
NUP54-208ENST00000508604 KNL1Q8NG31 2342 aa0.8□□□□□ -2.28
NUP54-208ENST00000508604 CD52P31358 61 aa0.79□□□□□ -2.28
NUP54-208ENST00000508604 KRTAP12-1P59990 96 aa0.79□□□□□ -2.28
NUP54-208ENST00000508604 RPL37P61927 97 aaKnown RBP0.79□□□□□ -2.28
NUP54-208ENST00000508604 SPINK13Q1W4C9 94 aa0.79□□□□□ -2.28
NUP54-208ENST00000508604 Q6ZRN7 208 aaPredicted RBP0.79□□□□□ -2.28
NUP54-208ENST00000508604 DEFB105AQ8NG35 78 aa0.79□□□□□ -2.28
NUP54-208ENST00000508604 PLCE1Q9P212 2302 aa0.79□□□□□ -2.28
NUP54-208ENST00000508604 CACNA1GO43497 2377 aa0.79□□□□□ -2.28
NUP54-208ENST00000508604 CUL9Q8IWT3 2517 aa0.79□□□□□ -2.28
NUP54-208ENST00000508604 BRWD1Q9NSI6 2320 aa0.78□□□□□ -2.28
NUP54-208ENST00000508604 KRTAP21-3Q3LHN1 58 aa0.78□□□□□ -2.28
NUP54-208ENST00000508604 H1FX-AS1Q4G0G2 97 aa0.78□□□□□ -2.28
NUP54-208ENST00000508604 UNQ6190/PRO20217Q6UXQ8 127 aa0.78□□□□□ -2.28
NUP54-208ENST00000508604 DEFB108BQ8NET1 73 aa0.78□□□□□ -2.28
NUP54-208ENST00000508604 H3BUX3 64 aa0.78□□□□□ -2.29
NUP54-208ENST00000508604 DEFB130BP0DP73 79 aa0.78□□□□□ -2.29
NUP54-208ENST00000508604 DEFB130AP0DP74 79 aa0.78□□□□□ -2.29
NUP54-208ENST00000508604 SPRR1BP22528 89 aa0.78□□□□□ -2.29
NUP54-208ENST00000508604 DEFB1P60022 68 aa0.78□□□□□ -2.29
NUP54-208ENST00000508604 UBE2DNLQ8IWF7 75 aa0.78□□□□□ -2.29
NUP54-208ENST00000508604 DEFB123Q8N688 67 aa0.78□□□□□ -2.29
NUP54-208ENST00000508604 DEFB119Q8N690 84 aa0.78□□□□□ -2.29
NUP54-208ENST00000508604 CNOT1A5YKK6 2376 aaKnown RBP0.77□□□□□ -2.29
NUP54-208ENST00000508604 BAHCC1Q9P281 2608 aa0.77□□□□□ -2.29
NUP54-208ENST00000508604 LYNX1P0DP58 116 aa0.77□□□□□ -2.29
NUP54-208ENST00000508604 COL6A6A6NMZ7 2263 aa0.77□□□□□ -2.29
NUP54-208ENST00000508604 TTC28Q96AY4 2481 aa0.76□□□□□ -2.29
NUP54-208ENST00000508604 ABCA1O95477 2261 aa0.76□□□□□ -2.29
NUP54-208ENST00000508604 WNK2Q9Y3S1 2297 aa0.76□□□□□ -2.29
NUP54-208ENST00000508604 K7EIL1 84 aa0.76□□□□□ -2.29
NUP54-208ENST00000508604 HTN1P15515 57 aa0.76□□□□□ -2.29
NUP54-208ENST00000508604 A0A0C4DFX4 3053 aa0.76□□□□□ -2.29
NUP54-208ENST00000508604 MUC2Q02817 5179 aa0.76□□□□□ -2.29
NUP54-208ENST00000508604 CACNA1BQ00975 2339 aa0.75□□□□□ -2.29
NUP54-208ENST00000508604 KIAA1109Q2LD37 5005 aa0.75□□□□□ -2.29
NUP54-208ENST00000508604 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP0.75□□□□□ -2.293e-7■■■□□ 16.4
NUP54-208ENST00000508604 C10orf95Q9H7T3 257 aa0.75□□□□□ -2.29
NUP54-208ENST00000508604 PRO0255Q9UI72 69 aa0.75□□□□□ -2.29
NUP54-208ENST00000508604 CACNA1EQ15878 2313 aa0.74□□□□□ -2.29
NUP54-208ENST00000508604 ZFHX2Q9C0A1 2572 aaPredicted RBP0.74□□□□□ -2.29
NUP54-208ENST00000508604 PRLHP81277 87 aa0.74□□□□□ -2.29
NUP54-208ENST00000508604 NOP10Q9NPE3 64 aaKnown RBP0.74□□□□□ -2.29
NUP54-208ENST00000508604 ANKRD17O75179 2603 aaKnown RBP0.73□□□□□ -2.29
NUP54-208ENST00000508604 SPTBN1Q01082 2364 aaKnown RBP0.73□□□□□ -2.29
NUP54-208ENST00000508604 LELP1Q5T871 98 aa0.73□□□□□ -2.29
NUP54-208ENST00000508604 FSIP2Q5CZC0 6907 aa0.73□□□□□ -2.29
NUP54-208ENST00000508604 FN1P02751 2386 aaKnown RBP0.73□□□□□ -2.29
NUP54-208ENST00000508604 WNK1Q9H4A3 2382 aa0.73□□□□□ -2.29
NUP54-208ENST00000508604 MDN1Q9NU22 5596 aa0.73□□□□□ -2.29
NUP54-208ENST00000508604 DEFB133Q30KQ1 61 aa0.72□□□□□ -2.29
NUP54-208ENST00000508604 S4R3F8 94 aa0.72□□□□□ -2.29
NUP54-208ENST00000508604 ZDBF2Q9HCK1 2354 aa0.72□□□□□ -2.29
NUP54-208ENST00000508604 SPINK1P00995 79 aa0.72□□□□□ -2.29
NUP54-208ENST00000508604 TPRP12270 2363 aaKnown RBP0.72□□□□□ -2.29
NUP54-208ENST00000508604 FLG2Q5D862 2391 aaPredicted RBP0.72□□□□□ -2.29
NUP54-208ENST00000508604 PCNX1Q96RV3 2341 aa0.71□□□□□ -2.3
NUP54-208ENST00000508604 ALMS1Q8TCU4 4167 aa0.71□□□□□ -2.3
NUP54-208ENST00000508604 MGAQ8IWI9 3026 aa0.71□□□□□ -2.3
NUP54-208ENST00000508604 DEFB136Q30KP8 78 aa0.71□□□□□ -2.3
NUP54-208ENST00000508604 APLNQ9ULZ1 77 aa0.71□□□□□ -2.3
NUP54-208ENST00000508604 CEP350Q5VT06 3117 aa0.7□□□□□ -2.3
NUP54-208ENST00000508604 H3BNG1 76 aa0.7□□□□□ -2.3
NUP54-208ENST00000508604 Q5VSD8 79 aa0.7□□□□□ -2.3
NUP54-208ENST00000508604 AKAP6Q13023 2319 aa0.7□□□□□ -2.3
NUP54-208ENST00000508604 WDR87Q6ZQQ6 2873 aa0.7□□□□□ -2.3
NUP54-208ENST00000508604 CHD7Q9P2D1 2997 aa0.69□□□□□ -2.3
NUP54-208ENST00000508604 ACACAQ13085 2346 aa0.69□□□□□ -2.3
NUP54-208ENST00000508604 PKDREJQ9NTG1 2253 aa0.69□□□□□ -2.3
NUP54-208ENST00000508604 IGF2RP11717 2491 aa0.69□□□□□ -2.3
NUP54-208ENST00000508604 PTPRZ1P23471 2315 aaPredicted RBP0.69□□□□□ -2.3
NUP54-208ENST00000508604 KMT2DO14686 5537 aa0.69□□□□□ -2.3
NUP54-208ENST00000508604 M0QZ58 72 aa0.69□□□□□ -2.3
NUP54-208ENST00000508604 TENM2Q9NT68 2774 aa0.68□□□□□ -2.3
NUP54-208ENST00000508604 A0A0D9SG42 100 aa0.68□□□□□ -2.3
NUP54-208ENST00000508604 LINC01556Q5JQF7 62 aa0.68□□□□□ -2.3
NUP54-208ENST00000508604 DEFB124Q8NES8 71 aa0.68□□□□□ -2.3
NUP54-208ENST00000508604 U3KQA8 63 aa0.68□□□□□ -2.3
NUP54-208ENST00000508604 A0A096LNI7 61 aa0.67□□□□□ -2.3
NUP54-208ENST00000508604 A0A096LPF7 62 aa0.67□□□□□ -2.3
NUP54-208ENST00000508604 FAM208BQ5VWN6 2430 aa0.67□□□□□ -2.3
NUP54-208ENST00000508604 ROS1P08922 2347 aa0.67□□□□□ -2.3
NUP54-208ENST00000508604 STAB1Q9NY15 2570 aa0.67□□□□□ -2.3
NUP54-208ENST00000508604 HELZ2Q9BYK8 2649 aaKnown RBP0.67□□□□□ -2.3
NUP54-208ENST00000508604 SPART-AS1P0CW21 52 aa0.66□□□□□ -2.3
NUP54-208ENST00000508604 DEFB103AP81534 67 aa0.66□□□□□ -2.3
NUP54-208ENST00000508604 SPINK6Q6UWN8 80 aa0.66□□□□□ -2.3
NUP54-208ENST00000508604 SPTBN2O15020 2390 aa0.66□□□□□ -2.3
NUP54-208ENST00000508604 SPTA1P02549 2419 aa0.66□□□□□ -2.3
NUP54-208ENST00000508604 APC2O95996 2303 aa0.66□□□□□ -2.3
NUP54-208ENST00000508604 CSPG4Q6UVK1 2322 aa0.66□□□□□ -2.3
NUP54-208ENST00000508604 TEP1Q99973 2627 aaKnown RBP0.65□□□□□ -2.31
NUP54-208ENST00000508604 SRCAPQ6ZRS2 3230 aa0.65□□□□□ -2.31
NUP54-208ENST00000508604 SPTBN4Q9H254 2564 aa0.65□□□□□ -2.31
NUP54-208ENST00000508604 MAP1BP46821 2468 aaKnown RBP0.65□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 100.7 ms