RNA–Protein interactions for RNA: ENST00000498259.1

SF3A1-210, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 875 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-210ENST00000498259 HECTD4Q9Y4D8 3996 aa5.17□□□□□ -1.58
SF3A1-210ENST00000498259 IGLV8-61A0A075B6I0 122 aa5.17□□□□□ -1.58
SF3A1-210ENST00000498259 A0A1B0GV72 72 aa5.17□□□□□ -1.58
SF3A1-210ENST00000498259 LINC00483Q53H64 154 aa5.17□□□□□ -1.58
SF3A1-210ENST00000498259 SPRR4Q96PI1 79 aa5.17□□□□□ -1.58
SF3A1-210ENST00000498259 DNAH17Q9UFH2 4485 aa5.17□□□□□ -1.58
SF3A1-210ENST00000498259 FRAS1Q86XX4 4008 aa5.16□□□□□ -1.58
SF3A1-210ENST00000498259 LINC00643Q86TS7 51 aa5.16□□□□□ -1.58
SF3A1-210ENST00000498259 SIGMAR1Q99720 223 aa5.16□□□□□ -1.58
SF3A1-210ENST00000498259 ATP5EP2Q5VTU8 51 aa5.15□□□□□ -1.59
SF3A1-210ENST00000498259 SMIM29Q86T20 159 aa5.15□□□□□ -1.59
SF3A1-210ENST00000498259 SPINK6Q6UWN8 80 aa5.14□□□□□ -1.59
SF3A1-210ENST00000498259 C3orf22Q8N5N4 141 aa5.14□□□□□ -1.59
SF3A1-210ENST00000498259 HYDINQ4G0P3 5121 aa5.13□□□□□ -1.59
SF3A1-210ENST00000498259 FAM229AH3BQW9 127 aa5.13□□□□□ -1.59
SF3A1-210ENST00000498259 PLA2G1BP04054 148 aaKnown RBP5.13□□□□□ -1.59
SF3A1-210ENST00000498259 FAM229BQ4G0N7 80 aa5.13□□□□□ -1.59
SF3A1-210ENST00000498259 C9orf153Q5TBE3 101 aa5.13□□□□□ -1.59
SF3A1-210ENST00000498259 Q8NBF4 154 aa5.13□□□□□ -1.59
SF3A1-210ENST00000498259 CDK2AP2O75956 126 aa5.12□□□□□ -1.59
SF3A1-210ENST00000498259 CRYGAP11844 174 aa5.12□□□□□ -1.59
SF3A1-210ENST00000498259 NREPQ16612 68 aa5.12□□□□□ -1.59
SF3A1-210ENST00000498259 Q6Q795 121 aa5.12□□□□□ -1.59
SF3A1-210ENST00000498259 SSBP3-AS1Q7Z2R9 100 aa5.12□□□□□ -1.59
SF3A1-210ENST00000498259 IMUPQ9GZP8 106 aa5.12□□□□□ -1.59
SF3A1-210ENST00000498259 CDIP1Q9H305 208 aa5.12□□□□□ -1.59
SF3A1-210ENST00000498259 LINC00846Q9NV44 126 aa5.12□□□□□ -1.59
SF3A1-210ENST00000498259 XGP55808 180 aa5.11□□□□□ -1.59
SF3A1-210ENST00000498259 IGLV9-49A0A0B4J1Y8 123 aa5.1□□□□□ -1.59
SF3A1-210ENST00000498259 IGFL1Q6UW32 110 aa5.1□□□□□ -1.59
SF3A1-210ENST00000498259 SS18L2Q9UHA2 77 aa5.1□□□□□ -1.59
SF3A1-210ENST00000498259 LORP23490 312 aaPredicted RBP5.09□□□□□ -1.59
SF3A1-210ENST00000498259 CXCL6P80162 114 aa5.09□□□□□ -1.59
SF3A1-210ENST00000498259 HAMPP81172 84 aa5.09□□□□□ -1.59
SF3A1-210ENST00000498259 SACSQ9NZJ4 4579 aa5.09□□□□□ -1.6
SF3A1-210ENST00000498259 TRBV7-7A0A0K0K1E9 115 aa5.08□□□□□ -1.6
SF3A1-210ENST00000498259 CD164Q04900 197 aa5.08□□□□□ -1.6
SF3A1-210ENST00000498259 MOBPQ13875 183 aa5.08□□□□□ -1.6
SF3A1-210ENST00000498259 Q6ZVQ6 151 aa5.08□□□□□ -1.6
SF3A1-210ENST00000498259 FAT2Q9NYQ8 4349 aa5.08□□□□□ -1.6
SF3A1-210ENST00000498259 PKD1P98161 4303 aa5.07□□□□□ -1.6
SF3A1-210ENST00000498259 A0A1W2PNM2 257 aa5.07□□□□□ -1.6
SF3A1-210ENST00000498259 SCGB1A1P11684 91 aa5.07□□□□□ -1.6
SF3A1-210ENST00000498259 BPY2O14599 106 aa5.06□□□□□ -1.6
SF3A1-210ENST00000498259 SMR3BP02814 79 aaPredicted RBP5.06□□□□□ -1.6
SF3A1-210ENST00000498259 J3KT08 172 aa5.05□□□□□ -1.6
SF3A1-210ENST00000498259 RYR2Q92736 4967 aa5.04□□□□□ -1.6
SF3A1-210ENST00000498259 DNAH11Q96DT5 4516 aa5.04□□□□□ -1.6
SF3A1-210ENST00000498259 A0A087WSZ3 146 aa5.04□□□□□ -1.6
SF3A1-210ENST00000498259 MT-ATP8P03928 68 aa5.04□□□□□ -1.6
SF3A1-210ENST00000498259 HIST1H4AP62805 103 aaKnown RBP5.03□□□□□ -1.6
SF3A1-210ENST00000498259 SPAG11AQ6PDA7 123 aa5.03□□□□□ -1.6
SF3A1-210ENST00000498259 TYMSOSQ8TAI1 123 aa5.02□□□□□ -1.61
SF3A1-210ENST00000498259 LIMD2Q9BT23 127 aa5.02□□□□□ -1.61
SF3A1-210ENST00000498259 ANAPC11Q9NYG5 84 aa5.02□□□□□ -1.61
SF3A1-210ENST00000498259 KMT2CQ8NEZ4 4911 aaKnown RBP5.01□□□□□ -1.61
SF3A1-210ENST00000498259 IGKV3D-7A0A0C4DH55 119 aa5.01□□□□□ -1.61
SF3A1-210ENST00000498259 NDUFB1O75438 58 aa5.01□□□□□ -1.61
SF3A1-210ENST00000498259 SPINK1P00995 79 aa5□□□□□ -1.61
SF3A1-210ENST00000498259 DNAH5Q8TE73 4624 aa5□□□□□ -1.61
SF3A1-210ENST00000498259 KRTAP1-4P0C5Y4 121 aa4.99□□□□□ -1.61
SF3A1-210ENST00000498259 Q5VSD8 79 aa4.99□□□□□ -1.61
SF3A1-210ENST00000498259 DNAH8Q96JB1 4490 aa4.99□□□□□ -1.61
SF3A1-210ENST00000498259 PKHD1P08F94 4074 aa4.99□□□□□ -1.61
SF3A1-210ENST00000498259 SRRM2Q9UQ35 2752 aaKnown RBP4.98□□□□□ -1.61
SF3A1-210ENST00000498259 A0A087X002 238 aa4.98□□□□□ -1.61
SF3A1-210ENST00000498259 A0A0G2JQZ4 141 aa4.98□□□□□ -1.61
SF3A1-210ENST00000498259 RPS29P62273 56 aaKnown RBP4.98□□□□□ -1.61
SF3A1-210ENST00000498259 ASB16-AS1Q495Z4 193 aa4.98□□□□□ -1.61
SF3A1-210ENST00000498259 Q5XG85 94 aa4.98□□□□□ -1.61
SF3A1-210ENST00000498259 HRCT1Q6UXD1 115 aa4.98□□□□□ -1.61
SF3A1-210ENST00000498259 A8MWP4 228 aa4.96□□□□□ -1.62
SF3A1-210ENST00000498259 KRTAP10-4P60372 401 aaPredicted RBP4.96□□□□□ -1.62
SF3A1-210ENST00000498259 KRTAP13-2Q52LG2 175 aa4.96□□□□□ -1.62
SF3A1-210ENST00000498259 Q8N1X5 172 aa4.96□□□□□ -1.62
SF3A1-210ENST00000498259 SMIM20Q8N5G0 67 aa4.96□□□□□ -1.62
SF3A1-210ENST00000498259 LINC00472Q9H8W2 130 aa4.96□□□□□ -1.62
SF3A1-210ENST00000498259 ATOX1O00244 68 aa4.95□□□□□ -1.62
SF3A1-210ENST00000498259 IGKV4-1P06312 121 aa4.95□□□□□ -1.62
SF3A1-210ENST00000498259 LINC00304Q8N9R0 145 aa4.95□□□□□ -1.62
SF3A1-210ENST00000498259 FAM236AA0A1B0GUQ0 79 aa4.94□□□□□ -1.62
SF3A1-210ENST00000498259 FAM236BA0A1B0GV22 79 aa4.94□□□□□ -1.62
SF3A1-210ENST00000498259 PRR26Q8N8Z3 221 aa4.94□□□□□ -1.62
SF3A1-210ENST00000498259 LRP1BQ9NZR2 4599 aa4.93□□□□□ -1.62
SF3A1-210ENST00000498259 VPS13BQ7Z7G8 4022 aa4.92□□□□□ -1.62
SF3A1-210ENST00000498259 DSCR10P59022 87 aa4.92□□□□□ -1.62
SF3A1-210ENST00000498259 PRR15Q8IV56 129 aa4.92□□□□□ -1.62
SF3A1-210ENST00000498259 ANAPC13Q9BS18 74 aa4.92□□□□□ -1.62
SF3A1-210ENST00000498259 DYNC1H1Q14204 4646 aaKnown RBP4.9□□□□□ -1.62
SF3A1-210ENST00000498259 A0A087WVE0 104 aa4.9□□□□□ -1.63
SF3A1-210ENST00000498259 HCG22E2RYF7 251 aa4.9□□□□□ -1.63
SF3A1-210ENST00000498259 K7EQZ3 153 aa4.9□□□□□ -1.63
SF3A1-210ENST00000498259 DEFB116Q30KQ4 102 aa4.9□□□□□ -1.63
SF3A1-210ENST00000498259 A0A1B0GVX0 72 aa4.89□□□□□ -1.63
SF3A1-210ENST00000498259 C8orf87E5RJ46 101 aa4.89□□□□□ -1.63
SF3A1-210ENST00000498259 PCP4P48539 62 aa4.89□□□□□ -1.63
SF3A1-210ENST00000498259 OXTP01178 125 aa4.88□□□□□ -1.63
SF3A1-210ENST00000498259 Q8N9L7 120 aa4.88□□□□□ -1.63
SF3A1-210ENST00000498259 Q96NJ1 140 aa4.88□□□□□ -1.63
SF3A1-210ENST00000498259 RYR3Q15413 4870 aa4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms