RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 TRGV3P03979 118 aa1.22□□□□□ -2.21
HMGB1-208ENST00000490788 IGHV1-8P0DP01 117 aa1.22□□□□□ -2.21
HMGB1-208ENST00000490788 KRTAP10-10P60014 251 aa1.22□□□□□ -2.21
HMGB1-208ENST00000490788 LY6EQ16553 131 aa1.22□□□□□ -2.21
HMGB1-208ENST00000490788 C1orf134Q5TEV5 83 aa1.22□□□□□ -2.21
HMGB1-208ENST00000490788 CASC2Q6XLA1 102 aa1.22□□□□□ -2.21
HMGB1-208ENST00000490788 MIR7-3HGQ8N6C7 128 aa1.22□□□□□ -2.21
HMGB1-208ENST00000490788 Q8N814 137 aa1.22□□□□□ -2.21
HMGB1-208ENST00000490788 LEAP2Q969E1 77 aa1.22□□□□□ -2.21
HMGB1-208ENST00000490788 LIMD2Q9BT23 127 aa1.22□□□□□ -2.21
HMGB1-208ENST00000490788 CDC42SE2Q9NRR3 84 aa1.22□□□□□ -2.21
HMGB1-208ENST00000490788 IGKV1D-37A0A075B6S9 117 aa1.21□□□□□ -2.22
HMGB1-208ENST00000490788 TRBV10-1A0A0K0K1A3 114 aa1.21□□□□□ -2.22
HMGB1-208ENST00000490788 CXorf51AA0A1B0GTR3 108 aa1.21□□□□□ -2.22
HMGB1-208ENST00000490788 SPRR5A0A1B0GTR4 108 aa1.21□□□□□ -2.22
HMGB1-208ENST00000490788 IGHV1-69P01742 117 aa1.21□□□□□ -2.22
HMGB1-208ENST00000490788 MGPP08493 103 aa1.21□□□□□ -2.22
HMGB1-208ENST00000490788 IGHV3-30-3P0DP02 117 aa1.21□□□□□ -2.22
HMGB1-208ENST00000490788 IGHV3-43DP0DP04 118 aa1.21□□□□□ -2.22
HMGB1-208ENST00000490788 CMC4P56277 68 aaPredicted RBP1.21□□□□□ -2.22
HMGB1-208ENST00000490788 Q6ZTI0 123 aa1.21□□□□□ -2.22
HMGB1-208ENST00000490788 DEFB104AQ8WTQ1 72 aa1.21□□□□□ -2.22
HMGB1-208ENST00000490788 RPL39LQ96EH5 51 aaKnown RBP1.21□□□□□ -2.22
HMGB1-208ENST00000490788 FGF23Q9GZV9 251 aaPredicted RBP1.21□□□□□ -2.22
HMGB1-208ENST00000490788 ORMDL1Q9P0S3 153 aa1.21□□□□□ -2.22
HMGB1-208ENST00000490788 S4R3C0 116 aa1.21□□□□□ -2.22
HMGB1-208ENST00000490788 SNRNP200O75643 2136 aaKnown RBP1.21□□□□□ -2.22
HMGB1-208ENST00000490788 DNAH3Q8TD57 4116 aa1.2□□□□□ -2.22
HMGB1-208ENST00000490788 IGKV2-40A0A087WW87 121 aaPredicted RBP1.2□□□□□ -2.22
HMGB1-208ENST00000490788 IGHV3-43A0A0B4J1X8 118 aa1.2□□□□□ -2.22
HMGB1-208ENST00000490788 TRBV6-5A0A0K0K1A5 114 aa1.2□□□□□ -2.22
HMGB1-208ENST00000490788 LOC101927531A0A1B0GV80 90 aa1.2□□□□□ -2.22
HMGB1-208ENST00000490788 IGKV2-29A2NJV5 120 aaPredicted RBP1.2□□□□□ -2.22
HMGB1-208ENST00000490788 NUPR2A6NF83 97 aa1.2□□□□□ -2.22
HMGB1-208ENST00000490788 LECT2O14960 151 aa1.2□□□□□ -2.22
HMGB1-208ENST00000490788 IGKV2D-40P01614 121 aaPredicted RBP1.2□□□□□ -2.22
HMGB1-208ENST00000490788 CRPP02741 224 aa1.2□□□□□ -2.22
HMGB1-208ENST00000490788 RPL39P62891 51 aaKnown RBP1.2□□□□□ -2.22
HMGB1-208ENST00000490788 PRCDQ00LT1 54 aa1.2□□□□□ -2.22
HMGB1-208ENST00000490788 DEFB112Q30KQ8 113 aa1.2□□□□□ -2.22
HMGB1-208ENST00000490788 RPL39P5Q59GN2 51 aa1.2□□□□□ -2.22
HMGB1-208ENST00000490788 CSAG1Q6PB30 78 aa1.2□□□□□ -2.22
HMGB1-208ENST00000490788 Q8NAQ8 132 aa1.2□□□□□ -2.22
HMGB1-208ENST00000490788 Q8TAT8 98 aa1.2□□□□□ -2.22
HMGB1-208ENST00000490788 LINC00308Q8TCZ7 52 aa1.2□□□□□ -2.22
HMGB1-208ENST00000490788 CNFNQ9BYD5 112 aa1.2□□□□□ -2.22
HMGB1-208ENST00000490788 NDUFA4L2Q9NRX3 87 aa1.2□□□□□ -2.22
HMGB1-208ENST00000490788 MRPL36Q9P0J6 103 aaKnown RBP1.2□□□□□ -2.22
HMGB1-208ENST00000490788 NEBP20929 6669 aa1.19□□□□□ -2.22
HMGB1-208ENST00000490788 APOBP04114 4563 aaKnown RBP1.19□□□□□ -2.22
HMGB1-208ENST00000490788 SYNE2Q8WXH0 6885 aaKnown RBP1.19□□□□□ -2.22
HMGB1-208ENST00000490788 NUP214P35658 2090 aaPredicted RBP1.19□□□□□ -2.22
HMGB1-208ENST00000490788 ZNF407Q9C0G0 2248 aa1.19□□□□□ -2.22
HMGB1-208ENST00000490788 IGHV3-21A0A0B4J1V1 117 aa1.19□□□□□ -2.22
HMGB1-208ENST00000490788 IGHV3-72A0A0B4J1Y9 119 aa1.19□□□□□ -2.22
HMGB1-208ENST00000490788 IGHV1-3A0A0C4DH29 117 aa1.19□□□□□ -2.22
HMGB1-208ENST00000490788 A0A1W2PNM2 257 aa1.19□□□□□ -2.22
HMGB1-208ENST00000490788 LYNX1G3V0Z9 82 aa1.19□□□□□ -2.22
HMGB1-208ENST00000490788 JMJD7-PLA2G4BH0Y9G9 81 aa1.19□□□□□ -2.22
HMGB1-208ENST00000490788 H0YGX0 51 aa1.19□□□□□ -2.22
HMGB1-208ENST00000490788 M0R2N4 97 aa1.19□□□□□ -2.22
HMGB1-208ENST00000490788 NDUFA1O15239 70 aa1.19□□□□□ -2.22
HMGB1-208ENST00000490788 CLPSP04118 112 aa1.19□□□□□ -2.22
HMGB1-208ENST00000490788 CGB3P0DN86 165 aa1.19□□□□□ -2.22
HMGB1-208ENST00000490788 CGB7P0DN87 165 aa1.19□□□□□ -2.22
HMGB1-208ENST00000490788 LYNX1P0DP58 116 aa1.19□□□□□ -2.22
HMGB1-208ENST00000490788 SPINK7P58062 85 aa1.19□□□□□ -2.22
HMGB1-208ENST00000490788 ROMO1P60602 79 aa1.19□□□□□ -2.22
HMGB1-208ENST00000490788 ERHP84090 104 aaKnown RBP1.19□□□□□ -2.22
HMGB1-208ENST00000490788 FAT1Q14517 4588 aa1.19□□□□□ -2.22
HMGB1-208ENST00000490788 KRTAP20-1Q3LI63 56 aa1.19□□□□□ -2.22
HMGB1-208ENST00000490788 ASB16-AS1Q495Z4 193 aa1.19□□□□□ -2.22
HMGB1-208ENST00000490788 KRTAP5-7Q6L8G8 165 aa1.19□□□□□ -2.22
HMGB1-208ENST00000490788 KIAA2026Q5HYC2 2103 aa1.19□□□□□ -2.22
HMGB1-208ENST00000490788 MED12LQ86YW9 2145 aa1.18□□□□□ -2.22
HMGB1-208ENST00000490788 IGKV2D-29A0A075B6S2 120 aaPredicted RBP1.18□□□□□ -2.22
HMGB1-208ENST00000490788 IGHV3OR16-8A0A075B7F1 116 aa1.18□□□□□ -2.22
HMGB1-208ENST00000490788 LOC110117498A0A087WWA1 95 aa1.18□□□□□ -2.22
HMGB1-208ENST00000490788 IGHV1-18A0A0C4DH31 117 aa1.18□□□□□ -2.22
HMGB1-208ENST00000490788 IGHV3-66A0A0C4DH42 116 aa1.18□□□□□ -2.22
HMGB1-208ENST00000490788 H0YGG7 62 aa1.18□□□□□ -2.22
HMGB1-208ENST00000490788 PPP1R17O96001 155 aa1.18□□□□□ -2.22
HMGB1-208ENST00000490788 IGLV2-23P01705 113 aa1.18□□□□□ -2.22
HMGB1-208ENST00000490788 SMR3BP02814 79 aaPredicted RBP1.18□□□□□ -2.22
HMGB1-208ENST00000490788 SAA2P0DJI9 122 aaPredicted RBP1.18□□□□□ -2.22
HMGB1-208ENST00000490788 CCL3P10147 92 aa1.18□□□□□ -2.22
HMGB1-208ENST00000490788 RPL27AP46776 148 aaKnown RBP1.18□□□□□ -2.22
HMGB1-208ENST00000490788 ELOF1P60002 83 aaKnown RBP1.18□□□□□ -2.22
HMGB1-208ENST00000490788 FAM27BQ5VT28 67 aa1.18□□□□□ -2.22
HMGB1-208ENST00000490788 BRD3OSQ6XYD6 125 aa1.18□□□□□ -2.22
HMGB1-208ENST00000490788 Q6ZQT0 140 aa1.18□□□□□ -2.22
HMGB1-208ENST00000490788 SMIM11BQ8TCY0 68 aa1.18□□□□□ -2.22
HMGB1-208ENST00000490788 ZCCHC13Q8WW36 166 aaKnown RBP1.18□□□□□ -2.22
HMGB1-208ENST00000490788 COX14Q96I36 57 aa1.18□□□□□ -2.22
HMGB1-208ENST00000490788 LINC00208Q96KT6 92 aa1.18□□□□□ -2.22
HMGB1-208ENST00000490788 LRP2P98164 4655 aa1.18□□□□□ -2.22
HMGB1-208ENST00000490788 SCN3AQ9NY46 2000 aa1.18□□□□□ -2.22
HMGB1-208ENST00000490788 GPR98Q8WXG9 6306 aa1.18□□□□□ -2.22
HMGB1-208ENST00000490788 DOCK11Q5JSL3 2073 aa1.17□□□□□ -2.22
HMGB1-208ENST00000490788 ARFGEF3Q5TH69 2177 aa1.17□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms