RNA–Protein interactions for RNA: ENST00000481019.5

PTPRF-213, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 459 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-213ENST00000481019 UBR4Q5T4S7 5183 aa7.33□□□□□ -1.24
PTPRF-213ENST00000481019 PPDPFLQ8WWR9 84 aa7.32□□□□□ -1.24
PTPRF-213ENST00000481019 FAM218AQ96MZ4 157 aa7.32□□□□□ -1.24
PTPRF-213ENST00000481019 BAALC-AS2P0C853 105 aa7.31□□□□□ -1.24
PTPRF-213ENST00000481019 ANKRD29Q8N6D5 301 aa7.31□□□□□ -1.24
PTPRF-213ENST00000481019 PRLHP81277 87 aa7.3□□□□□ -1.24
PTPRF-213ENST00000481019 ANAPC11Q9NYG5 84 aa7.29□□□□□ -1.24
PTPRF-213ENST00000481019 Q6ZQY7 126 aa7.28□□□□□ -1.24
PTPRF-213ENST00000481019 LRP2P98164 4655 aa7.28□□□□□ -1.24
PTPRF-213ENST00000481019 HIGD2AQ9BW72 106 aa7.27□□□□□ -1.25
PTPRF-213ENST00000481019 ZNF706Q9Y5V0 76 aaPredicted RBP7.27□□□□□ -1.25
PTPRF-213ENST00000481019 C21orf62-AS1Q17RA5 79 aa7.26□□□□□ -1.25
PTPRF-213ENST00000481019 SMCR5Q8TEV8 140 aa7.26□□□□□ -1.25
PTPRF-213ENST00000481019 Q9BRP9 147 aa7.26□□□□□ -1.25
PTPRF-213ENST00000481019 PRO0461Q9UI25 63 aa7.26□□□□□ -1.25
PTPRF-213ENST00000481019 A0A087X002 238 aa7.25□□□□□ -1.25
PTPRF-213ENST00000481019 JMJD7-PLA2G4BH0Y9G9 81 aa7.25□□□□□ -1.25
PTPRF-213ENST00000481019 LPAP08519 4548 aa7.24□□□□□ -1.25
PTPRF-213ENST00000481019 TEX49A0A1B0GTD5 131 aa7.24□□□□□ -1.25
PTPRF-213ENST00000481019 TEN1Q86WV5 123 aa7.24□□□□□ -1.25
PTPRF-213ENST00000481019 IGLV5-48A0A075B6I7 105 aa7.23□□□□□ -1.25
PTPRF-213ENST00000481019 LAMTOR3Q9UHA4 124 aa7.23□□□□□ -1.25
PTPRF-213ENST00000481019 J3QR89 54 aa7.22□□□□□ -1.25
PTPRF-213ENST00000481019 KRTAP13-2Q52LG2 175 aa7.22□□□□□ -1.25
PTPRF-213ENST00000481019 MTURNQ8N3F0 131 aa7.22□□□□□ -1.25
PTPRF-213ENST00000481019 PDE6GP18545 87 aa7.21□□□□□ -1.26
PTPRF-213ENST00000481019 SMCPP49901 116 aaPredicted RBP7.21□□□□□ -1.26
PTPRF-213ENST00000481019 ETDBQ3ZM63 59 aa7.21□□□□□ -1.26
PTPRF-213ENST00000481019 DEFB105AQ8NG35 78 aa7.21□□□□□ -1.26
PTPRF-213ENST00000481019 F8WEM9 126 aa7.2□□□□□ -1.26
PTPRF-213ENST00000481019 NDUFV3P56181 108 aaKnown RBP7.2□□□□□ -1.26
PTPRF-213ENST00000481019 ERC2-IT1O76042 136 aa7.19□□□□□ -1.26
PTPRF-213ENST00000481019 SPRR1BP22528 89 aa7.19□□□□□ -1.26
PTPRF-213ENST00000481019 RBM3P98179 157 aaKnown RBP7.19□□□□□ -1.26
PTPRF-213ENST00000481019 Q8N377 158 aa7.18□□□□□ -1.26
PTPRF-213ENST00000481019 DSCR8Q96T75 97 aa7.18□□□□□ -1.26
PTPRF-213ENST00000481019 GAGE2AQ6NT46 116 aa7.17□□□□□ -1.26
PTPRF-213ENST00000481019 SPRR4Q96PI1 79 aa7.17□□□□□ -1.26
PTPRF-213ENST00000481019 CRYGAP11844 174 aa7.16□□□□□ -1.26
PTPRF-213ENST00000481019 LINC01547P58512 204 aaPredicted RBP7.16□□□□□ -1.26
PTPRF-213ENST00000481019 C3orf22Q8N5N4 141 aa7.16□□□□□ -1.26
PTPRF-213ENST00000481019 ST20-AS1Q8NBB2 130 aa7.16□□□□□ -1.26
PTPRF-213ENST00000481019 OBSCN-AS1Q96MR7 158 aa7.16□□□□□ -1.26
PTPRF-213ENST00000481019 K7ERU9 68 aa7.15□□□□□ -1.26
PTPRF-213ENST00000481019 FAM229BQ4G0N7 80 aa7.15□□□□□ -1.26
PTPRF-213ENST00000481019 LINC00483Q53H64 154 aa7.14□□□□□ -1.27
PTPRF-213ENST00000481019 RNF213Q63HN8 5207 aa7.14□□□□□ -1.27
PTPRF-213ENST00000481019 TYMSOSQ8TAI1 123 aa7.14□□□□□ -1.27
PTPRF-213ENST00000481019 Q6JHZ5 121 aa7.13□□□□□ -1.27
PTPRF-213ENST00000481019 LOC110117498A0A087WWA1 95 aa7.11□□□□□ -1.27
PTPRF-213ENST00000481019 A0A1B0GW54 56 aa7.11□□□□□ -1.27
PTPRF-213ENST00000481019 ACYP1P07311 99 aa7.11□□□□□ -1.27
PTPRF-213ENST00000481019 IGLV8-61A0A075B6I0 122 aa7.1□□□□□ -1.27
PTPRF-213ENST00000481019 SMIM29Q86T20 159 aa7.1□□□□□ -1.27
PTPRF-213ENST00000481019 C14orf132Q9NPU4 83 aa7.09□□□□□ -1.27
PTPRF-213ENST00000481019 TRBV7-4A0A0J9YYF1 115 aa7.08□□□□□ -1.28
PTPRF-213ENST00000481019 CCKP06307 115 aa7.08□□□□□ -1.28
PTPRF-213ENST00000481019 FAM240AA0A1B0GVK7 77 aa7.07□□□□□ -1.28
PTPRF-213ENST00000481019 SSBP3-AS1Q7Z2R9 100 aa7.07□□□□□ -1.28
PTPRF-213ENST00000481019 LINC00304Q8N9R0 145 aa7.07□□□□□ -1.28
PTPRF-213ENST00000481019 C9orf153Q5TBE3 101 aa7.06□□□□□ -1.28
PTPRF-213ENST00000481019 Q6ZQT0 140 aa7.06□□□□□ -1.28
PTPRF-213ENST00000481019 A0A1B0GV72 72 aa7.05□□□□□ -1.28
PTPRF-213ENST00000481019 Q8NBF4 154 aa7.05□□□□□ -1.28
PTPRF-213ENST00000481019 IGLV9-49A0A0B4J1Y8 123 aa7.04□□□□□ -1.28
PTPRF-213ENST00000481019 RETNLBQ9BQ08 111 aa7.04□□□□□ -1.28
PTPRF-213ENST00000481019 PRR4Q16378 134 aa7.03□□□□□ -1.28
PTPRF-213ENST00000481019 MOBPQ13875 183 aa7.02□□□□□ -1.29
PTPRF-213ENST00000481019 Q6Q795 121 aa7.02□□□□□ -1.29
PTPRF-213ENST00000481019 VPS25Q9BRG1 176 aa7.02□□□□□ -1.29
PTPRF-213ENST00000481019 IGFL1Q6UW32 110 aa7.01□□□□□ -1.29
PTPRF-213ENST00000481019 MUC17Q685J3 4493 aa7□□□□□ -1.29
PTPRF-213ENST00000481019 CD164Q04900 197 aa7□□□□□ -1.29
PTPRF-213ENST00000481019 UBL5Q9BZL1 73 aa7□□□□□ -1.29
PTPRF-213ENST00000481019 C4orf48Q5BLP8 95 aa6.98□□□□□ -1.29
PTPRF-213ENST00000481019 SS18L2Q9UHA2 77 aa6.97□□□□□ -1.29
PTPRF-213ENST00000481019 A0A1W2PNM2 257 aa6.96□□□□□ -1.3
PTPRF-213ENST00000481019 SPAG11AQ6PDA7 123 aa6.96□□□□□ -1.3
PTPRF-213ENST00000481019 NREPQ16612 68 aa6.95□□□□□ -1.3
PTPRF-213ENST00000481019 TRBV7-7A0A0K0K1E9 115 aa6.94□□□□□ -1.3
PTPRF-213ENST00000481019 MUC2Q02817 5179 aa6.93□□□□□ -1.3
PTPRF-213ENST00000481019 LINC00643Q86TS7 51 aa6.93□□□□□ -1.3
PTPRF-213ENST00000481019 LINC00846Q9NV44 126 aa6.93□□□□□ -1.3
PTPRF-213ENST00000481019 A0A0G2JQZ4 141 aa6.92□□□□□ -1.3
PTPRF-213ENST00000481019 A0A087WSZ3 146 aa6.91□□□□□ -1.3
PTPRF-213ENST00000481019 SPINK1P00995 79 aa6.91□□□□□ -1.3
PTPRF-213ENST00000481019 ATP5EP2Q5VTU8 51 aa6.91□□□□□ -1.3
PTPRF-213ENST00000481019 LIMD2Q9BT23 127 aa6.91□□□□□ -1.3
PTPRF-213ENST00000481019 IGLV7-46A0A075B6I9 117 aa6.9□□□□□ -1.3
PTPRF-213ENST00000481019 HRCT1Q6UXD1 115 aa6.9□□□□□ -1.3
PTPRF-213ENST00000481019 RPS29P62273 56 aaKnown RBP6.89□□□□□ -1.31
PTPRF-213ENST00000481019 Q5XG85 94 aa6.88□□□□□ -1.31
PTPRF-213ENST00000481019 Q6ZVQ6 151 aa6.88□□□□□ -1.31
PTPRF-213ENST00000481019 CDIP1Q9H305 208 aa6.88□□□□□ -1.31
PTPRF-213ENST00000481019 J3KT08 172 aa6.87□□□□□ -1.31
PTPRF-213ENST00000481019 BPY2O14599 106 aa6.86□□□□□ -1.31
PTPRF-213ENST00000481019 CXCL6P80162 114 aa6.86□□□□□ -1.31
PTPRF-213ENST00000481019 ASB16-AS1Q495Z4 193 aa6.86□□□□□ -1.31
PTPRF-213ENST00000481019 SIGMAR1Q99720 223 aa6.86□□□□□ -1.31
PTPRF-213ENST00000481019 TPRXLQ17RH7 258 aa6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms