RNA–Protein interactions for RNA: ENST00000479532.1

SF3B1-209, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 587 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-209ENST00000479532 C15orf56Q8N910 161 aa4.03□□□□□ -1.76
SF3B1-209ENST00000479532 NDUFA12Q9UI09 145 aa4.03□□□□□ -1.76
SF3B1-209ENST00000479532 C22orf24Q9Y442 160 aa4.03□□□□□ -1.76
SF3B1-209ENST00000479532 IGHV3-64A0A075B6Q5 118 aa4.02□□□□□ -1.77
SF3B1-209ENST00000479532 A0A1B0GVY2 172 aa4.02□□□□□ -1.77
SF3B1-209ENST00000479532 COX6A2Q02221 97 aa4.02□□□□□ -1.77
SF3B1-209ENST00000479532 BRK1Q8WUW1 75 aa4.02□□□□□ -1.77
SF3B1-209ENST00000479532 CAMK2N2Q96S95 79 aa4.02□□□□□ -1.77
SF3B1-209ENST00000479532 TOMM7Q9P0U1 55 aa4.02□□□□□ -1.77
SF3B1-209ENST00000479532 CDKN2A-AS1Q9UH64 79 aa4.02□□□□□ -1.77
SF3B1-209ENST00000479532 IGLV9-49A0A0B4J1Y8 123 aa4.01□□□□□ -1.77
SF3B1-209ENST00000479532 PDE6GP18545 87 aa4.01□□□□□ -1.77
SF3B1-209ENST00000479532 CNBPP62633 177 aaKnown RBP4.01□□□□□ -1.77
SF3B1-209ENST00000479532 CXCL6P80162 114 aa4.01□□□□□ -1.77
SF3B1-209ENST00000479532 C20orf197Q8N268 126 aa4.01□□□□□ -1.77
SF3B1-209ENST00000479532 LINC00167Q96N53 147 aa4.01□□□□□ -1.77
SF3B1-209ENST00000479532 LINC00846Q9NV44 126 aa4.01□□□□□ -1.77
SF3B1-209ENST00000479532 SYCNQ0VAF6 134 aa4□□□□□ -1.77
SF3B1-209ENST00000479532 Q1T7F1 81 aa4□□□□□ -1.77
SF3B1-209ENST00000479532 Q8IZM0 81 aa4□□□□□ -1.77
SF3B1-209ENST00000479532 LINC00308Q8TCZ7 52 aa4□□□□□ -1.77
SF3B1-209ENST00000479532 COX7B2Q8TF08 81 aa4□□□□□ -1.77
SF3B1-209ENST00000479532 UBL5Q9BZL1 73 aa4□□□□□ -1.77
SF3B1-209ENST00000479532 DNAH2Q9P225 4427 aa4□□□□□ -1.77
SF3B1-209ENST00000479532 SMIM1B2RUZ4 78 aa3.99□□□□□ -1.77
SF3B1-209ENST00000479532 SMIM29Q86T20 159 aa3.99□□□□□ -1.77
SF3B1-209ENST00000479532 C9orf163Q8N9P6 203 aa3.99□□□□□ -1.77
SF3B1-209ENST00000479532 DNAH10Q8IVF4 4471 aa3.99□□□□□ -1.77
SF3B1-209ENST00000479532 DNAH17Q9UFH2 4485 aa3.99□□□□□ -1.77
SF3B1-209ENST00000479532 FUSP35637 526 aaKnown RBP eCLIP3.98□□□□□ -1.77
SF3B1-209ENST00000479532 RBM3P98179 157 aaKnown RBP3.98□□□□□ -1.77
SF3B1-209ENST00000479532 ADAMTSL4-AS1Q5T5F5 129 aa3.98□□□□□ -1.77
SF3B1-209ENST00000479532 MRPL55Q7Z7F7 128 aaKnown RBP3.98□□□□□ -1.77
SF3B1-209ENST00000479532 LINC00474Q9P2X8 69 aa3.98□□□□□ -1.77
SF3B1-209ENST00000479532 TRBV7-4A0A0J9YYF1 115 aa3.97□□□□□ -1.77
SF3B1-209ENST00000479532 TMEM256-PLSCR3K7ERE1 68 aa3.97□□□□□ -1.77
SF3B1-209ENST00000479532 KIAA0087Q14695 138 aa3.97□□□□□ -1.77
SF3B1-209ENST00000479532 LOC110117498A0A087WWA1 95 aa3.96□□□□□ -1.78
SF3B1-209ENST00000479532 IGKV3D-7A0A0C4DH55 119 aa3.96□□□□□ -1.78
SF3B1-209ENST00000479532 F8WEM9 126 aa3.96□□□□□ -1.78
SF3B1-209ENST00000479532 NDUFS5O43920 106 aa3.96□□□□□ -1.78
SF3B1-209ENST00000479532 UNQ6190/PRO20217Q6UXQ8 127 aa3.96□□□□□ -1.78
SF3B1-209ENST00000479532 ORMDL1Q9P0S3 153 aa3.96□□□□□ -1.78
SF3B1-209ENST00000479532 FAT2Q9NYQ8 4349 aa3.96□□□□□ -1.78
SF3B1-209ENST00000479532 A0A087WVE0 104 aa3.95□□□□□ -1.78
SF3B1-209ENST00000479532 TLX1NBP0CAT3 122 aa3.95□□□□□ -1.78
SF3B1-209ENST00000479532 LINC01547P58512 204 aaPredicted RBP3.95□□□□□ -1.78
SF3B1-209ENST00000479532 KRTAP10-1P60331 282 aa3.95□□□□□ -1.78
SF3B1-209ENST00000479532 KTN1-AS1Q86SY8 53 aa3.95□□□□□ -1.78
SF3B1-209ENST00000479532 C6orf48Q9UBA6 75 aa3.95□□□□□ -1.78
SF3B1-209ENST00000479532 HECTD4Q9Y4D8 3996 aa3.95□□□□□ -1.78
SF3B1-209ENST00000479532 IGKV2-24A0A0C4DH68 120 aa3.94□□□□□ -1.78
SF3B1-209ENST00000479532 CDK2AP2O75956 126 aa3.94□□□□□ -1.78
SF3B1-209ENST00000479532 COX17Q14061 63 aa3.94□□□□□ -1.78
SF3B1-209ENST00000479532 ZNF625Q96I27 306 aaPredicted RBP3.94□□□□□ -1.78
SF3B1-209ENST00000479532 C14orf132Q9NPU4 83 aa3.94□□□□□ -1.78
SF3B1-209ENST00000479532 TRAV23DV6A0A075B6W5 121 aa3.93□□□□□ -1.78
SF3B1-209ENST00000479532 A0A096LNI7 61 aa3.93□□□□□ -1.78
SF3B1-209ENST00000479532 UBE2BP63146 152 aa3.93□□□□□ -1.78
SF3B1-209ENST00000479532 FAM218AQ96MZ4 157 aa3.93□□□□□ -1.78
SF3B1-209ENST00000479532 PKD1P98161 4303 aa3.93□□□□□ -1.78
SF3B1-209ENST00000479532 LINC00158P58513 81 aa3.92□□□□□ -1.78
SF3B1-209ENST00000479532 C9orf116Q5BN46 136 aaPredicted RBP3.92□□□□□ -1.78
SF3B1-209ENST00000479532 Q6ZRP5 223 aa3.92□□□□□ -1.78
SF3B1-209ENST00000479532 Q6ZSA8 131 aa3.92□□□□□ -1.78
SF3B1-209ENST00000479532 PHF5AQ7RTV0 110 aaKnown RBP3.92□□□□□ -1.78
SF3B1-209ENST00000479532 TMEM254Q8TBM7 123 aa3.92□□□□□ -1.78
SF3B1-209ENST00000479532 SPACA4Q8TDM5 124 aa3.92□□□□□ -1.78
SF3B1-209ENST00000479532 DNAH11Q96DT5 4516 aa3.91□□□□□ -1.78
SF3B1-209ENST00000479532 CHTF8P0CG12 524 aa3.91□□□□□ -1.78
SF3B1-209ENST00000479532 Q6ZVQ6 151 aa3.91□□□□□ -1.78
SF3B1-209ENST00000479532 C7orf33Q8WU49 177 aa3.91□□□□□ -1.78
SF3B1-209ENST00000479532 CYP4F30PQ9H0H9 118 aa3.91□□□□□ -1.78
SF3B1-209ENST00000479532 DNAH5Q8TE73 4624 aa3.91□□□□□ -1.78
SF3B1-209ENST00000479532 EPPK1P58107 5090 aaKnown RBP3.9□□□□□ -1.78
SF3B1-209ENST00000479532 A0A087WYN8 130 aa3.9□□□□□ -1.79
SF3B1-209ENST00000479532 A0A087X002 238 aa3.9□□□□□ -1.79
SF3B1-209ENST00000479532 A0A1B0GW54 56 aa3.9□□□□□ -1.79
SF3B1-209ENST00000479532 hDV103S1A0JD37 113 aa3.9□□□□□ -1.79
SF3B1-209ENST00000479532 SCXQ7RTU7 201 aa3.9□□□□□ -1.79
SF3B1-209ENST00000479532 MIR7-3HGQ8N6C7 128 aa3.9□□□□□ -1.79
SF3B1-209ENST00000479532 CIRBP-AS1Q8TBR5 109 aa3.9□□□□□ -1.79
SF3B1-209ENST00000479532 PLAC8Q9NZF1 115 aa3.9□□□□□ -1.79
SF3B1-209ENST00000479532 NREPQ16612 68 aa3.89□□□□□ -1.79
SF3B1-209ENST00000479532 SOSTDC1Q6X4U4 206 aa3.89□□□□□ -1.79
SF3B1-209ENST00000479532 NKAPP1Q8N9T2 125 aa3.89□□□□□ -1.79
SF3B1-209ENST00000479532 SMIM11BQ8TCY0 68 aa3.89□□□□□ -1.79
SF3B1-209ENST00000479532 XAGE1AQ9HD64 81 aa3.89□□□□□ -1.79
SF3B1-209ENST00000479532 PKHD1P08F94 4074 aa3.89□□□□□ -1.79
SF3B1-209ENST00000479532 BIRC6Q9NR09 4857 aa3.88□□□□□ -1.79
SF3B1-209ENST00000479532 PANO1I0J062 215 aa3.88□□□□□ -1.79
SF3B1-209ENST00000479532 HAMPP81172 84 aa3.88□□□□□ -1.79
SF3B1-209ENST00000479532 ATP11AUNQ6ZP68 121 aa3.88□□□□□ -1.79
SF3B1-209ENST00000479532 Q6ZQT0 140 aa3.88□□□□□ -1.79
SF3B1-209ENST00000479532 PRAC1Q96KF2 57 aa3.88□□□□□ -1.79
SF3B1-209ENST00000479532 SND1-IT1Q9HBX3 110 aa3.88□□□□□ -1.79
SF3B1-209ENST00000479532 DYNC1H1Q14204 4646 aaKnown RBP3.88□□□□□ -1.79
SF3B1-209ENST00000479532 IGKV2-28A0A075B6P5 120 aa3.87□□□□□ -1.79
SF3B1-209ENST00000479532 A0A1W2PNN7 141 aa3.87□□□□□ -1.79
SF3B1-209ENST00000479532 NDUFB1O75438 58 aa3.87□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms