RNA–Protein interactions for RNA: ENST00000470531.5

CHD3-208, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 3,744 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-208ENST00000470531 LOC110117498A0A087WWA1 95 aa7□□□□□ -1.29
CHD3-208ENST00000470531 BCE1O60756 84 aa7□□□□□ -1.29
CHD3-208ENST00000470531 REG3GQ6UW15 175 aa7□□□□□ -1.29
CHD3-208ENST00000470531 PRR34Q9NV39 138 aa7□□□□□ -1.29
CHD3-208ENST00000470531 EPM2AB3EWF7 344 aa7□□□□□ -1.29
CHD3-208ENST00000470531 RETNLBQ9BQ08 111 aa7□□□□□ -1.29
CHD3-208ENST00000470531 LINC00588Q9Y4M8 146 aa6.99□□□□□ -1.29
CHD3-208ENST00000470531 PHF5AQ7RTV0 110 aaKnown RBP6.99□□□□□ -1.29
CHD3-208ENST00000470531 LINC00612Q8N6U2 182 aa6.99□□□□□ -1.29
CHD3-208ENST00000470531 Q9BRP9 147 aa6.99□□□□□ -1.29
CHD3-208ENST00000470531 LINC00476Q8WZB0 136 aa6.98□□□□□ -1.29
CHD3-208ENST00000470531 H3BQ85 93 aa6.97□□□□□ -1.29
CHD3-208ENST00000470531 LCA10Q71F78 164 aa6.97□□□□□ -1.29
CHD3-208ENST00000470531 KRTAP24-1Q3LI83 254 aa6.97□□□□□ -1.29
CHD3-208ENST00000470531 TRBV7-4A0A0J9YYF1 115 aa6.97□□□□□ -1.29
CHD3-208ENST00000470531 Q6ZRX8 168 aa6.96□□□□□ -1.29
CHD3-208ENST00000470531 C7orf65Q6ZTY9 151 aa6.96□□□□□ -1.29
CHD3-208ENST00000470531 hDV103S1A0JD37 113 aa6.95□□□□□ -1.3
CHD3-208ENST00000470531 NDUFB1O75438 58 aa6.95□□□□□ -1.3
CHD3-208ENST00000470531 A0A1W2PNM2 257 aa6.95□□□□□ -1.3
CHD3-208ENST00000470531 LINC01556Q5JQF7 62 aa6.95□□□□□ -1.3
CHD3-208ENST00000470531 ANAPC11Q9NYG5 84 aa6.94□□□□□ -1.3
CHD3-208ENST00000470531 IGHV6-1A0A0B4J1U7 121 aa6.93□□□□□ -1.3
CHD3-208ENST00000470531 DNAH10OSP0CZ25 163 aa6.93□□□□□ -1.3
CHD3-208ENST00000470531 CASC2Q6XLA1 102 aa6.92□□□□□ -1.3
CHD3-208ENST00000470531 ATP11AUNQ6ZP68 121 aa6.92□□□□□ -1.3
CHD3-208ENST00000470531 Q8NBF4 154 aa6.92□□□□□ -1.3
CHD3-208ENST00000470531 PRAC1Q96KF2 57 aa6.92□□□□□ -1.3
CHD3-208ENST00000470531 C16orf90A8MZG2 172 aa6.91□□□□□ -1.3
CHD3-208ENST00000470531 Q1T7F1 81 aa6.91□□□□□ -1.3
CHD3-208ENST00000470531 B9D2Q9BPU9 175 aa6.91□□□□□ -1.3
CHD3-208ENST00000470531 COL7A1Q02388 2944 aa6.91□□□□□ -1.3
CHD3-208ENST00000470531 H0Y9P7 68 aa6.9□□□□□ -1.3
CHD3-208ENST00000470531 ZNF706Q9Y5V0 76 aaPredicted RBP6.9□□□□□ -1.3
CHD3-208ENST00000470531 GVQW2A0A096LPI5 108 aaPredicted RBP6.9□□□□□ -1.3
CHD3-208ENST00000470531 LIMD2Q9BT23 127 aa6.9□□□□□ -1.31
CHD3-208ENST00000470531 A0A0A0MQY5 61 aa6.88□□□□□ -1.31
CHD3-208ENST00000470531 IGLV1-50A0A075B6I6 118 aa6.88□□□□□ -1.31
CHD3-208ENST00000470531 KCNQ1DNQ9H478 68 aa6.88□□□□□ -1.31
CHD3-208ENST00000470531 PRR26Q8N8Z3 221 aa6.87□□□□□ -1.31
CHD3-208ENST00000470531 IGFL1Q6UW32 110 aa6.87□□□□□ -1.31
CHD3-208ENST00000470531 CIRBP-AS1Q8TBR5 109 aa6.86□□□□□ -1.31
CHD3-208ENST00000470531 OCR1Q9BZK8 76 aa6.86□□□□□ -1.31
CHD3-208ENST00000470531 TGP01266 2768 aa6.85□□□□□ -1.31
CHD3-208ENST00000470531 Q5VV11 94 aa6.84□□□□□ -1.31
CHD3-208ENST00000470531 DMBT1Q9UGM3 2413 aaPredicted RBP6.84□□□□□ -1.31
CHD3-208ENST00000470531 SPAG11AQ6PDA7 123 aa6.83□□□□□ -1.32
CHD3-208ENST00000470531 LINC01554Q52M75 96 aa6.83□□□□□ -1.32
CHD3-208ENST00000470531 MOBPQ13875 183 aa6.81□□□□□ -1.32
CHD3-208ENST00000470531 DSCR10P59022 87 aa6.81□□□□□ -1.32
CHD3-208ENST00000470531 ANK3Q12955 4377 aaKnown RBP6.8□□□□□ -1.32
CHD3-208ENST00000470531 LY6G6CO95867 125 aa6.8□□□□□ -1.32
CHD3-208ENST00000470531 K7EIL1 84 aa6.79□□□□□ -1.32
CHD3-208ENST00000470531 KRTAP26-1Q6PEX3 210 aa6.77□□□□□ -1.33
CHD3-208ENST00000470531 LINC00313P59037 77 aa6.77□□□□□ -1.33
CHD3-208ENST00000470531 CYP4F30PQ9H0H9 118 aa6.77□□□□□ -1.33
CHD3-208ENST00000470531 H3BNG1 76 aa6.76□□□□□ -1.33
CHD3-208ENST00000470531 KRTAP1-5Q9BYS1 174 aa6.76□□□□□ -1.33
CHD3-208ENST00000470531 IGLV5-48A0A075B6I7 105 aa6.75□□□□□ -1.33
CHD3-208ENST00000470531 LOC101927531A0A1B0GV80 90 aa6.75□□□□□ -1.33
CHD3-208ENST00000470531 SPINK1P00995 79 aa6.75□□□□□ -1.33
CHD3-208ENST00000470531 C14orf177Q52M58 125 aa6.75□□□□□ -1.33
CHD3-208ENST00000470531 CDC42SE1Q9NRR8 79 aa6.75□□□□□ -1.33
CHD3-208ENST00000470531 IGLV8-61A0A075B6I0 122 aa6.73□□□□□ -1.33
CHD3-208ENST00000470531 Q8N9P0 234 aaPredicted RBP6.73□□□□□ -1.33
CHD3-208ENST00000470531 A6NN06 94 aa6.72□□□□□ -1.33
CHD3-208ENST00000470531 J3QL48 77 aa6.7□□□□□ -1.34
CHD3-208ENST00000470531 KRTAP7-1Q8IUC3 87 aa6.69□□□□□ -1.34
CHD3-208ENST00000470531 ADM2Q7Z4H4 148 aa6.68□□□□□ -1.34
CHD3-208ENST00000470531 KRTAP11-1Q8IUC1 163 aa6.68□□□□□ -1.34
CHD3-208ENST00000470531 PANO1I0J062 215 aa6.68□□□□□ -1.34
CHD3-208ENST00000470531 COA5Q86WW8 74 aa6.68□□□□□ -1.34
CHD3-208ENST00000470531 IGLV5-52A0A0A0MRZ9 124 aa6.67□□□□□ -1.34
CHD3-208ENST00000470531 IGKV2D-30A0A075B6S6 120 aa6.67□□□□□ -1.34
CHD3-208ENST00000470531 IGKV2-30P06310 120 aa6.67□□□□□ -1.34
CHD3-208ENST00000470531 A8MWP4 228 aa6.66□□□□□ -1.34
CHD3-208ENST00000470531 PLA2G2DQ9UNK4 145 aa6.66□□□□□ -1.34
CHD3-208ENST00000470531 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.66□□□□□ -1.34
CHD3-208ENST00000470531 NBDYA0A0U1RRE5 68 aa6.65□□□□□ -1.34
CHD3-208ENST00000470531 SPACA4Q8TDM5 124 aa6.65□□□□□ -1.34
CHD3-208ENST00000470531 Q75L30 129 aa6.65□□□□□ -1.35
CHD3-208ENST00000470531 TLX1NBP0CAT3 122 aa6.64□□□□□ -1.35
CHD3-208ENST00000470531 SPRR4Q96PI1 79 aa6.63□□□□□ -1.35
CHD3-208ENST00000470531 SPINK7P58062 85 aa6.63□□□□□ -1.35
CHD3-208ENST00000470531 FBN3Q75N90 2809 aa6.62□□□□□ -1.35
CHD3-208ENST00000470531 CNBPP62633 177 aaKnown RBP6.62□□□□□ -1.35
CHD3-208ENST00000470531 TNP2Q05952 138 aa6.62□□□□□ -1.35
CHD3-208ENST00000470531 ZCCHC13Q8WW36 166 aaKnown RBP6.62□□□□□ -1.35
CHD3-208ENST00000470531 FLG2Q5D862 2391 aaPredicted RBP6.62□□□□□ -1.35
CHD3-208ENST00000470531 RTL8CO15255 209 aa6.62□□□□□ -1.35
CHD3-208ENST00000470531 ANK2Q01484 3957 aa6.6□□□□□ -1.35
CHD3-208ENST00000470531 KRTAP4-16G5E9R7 235 aaPredicted RBP6.6□□□□□ -1.35
CHD3-208ENST00000470531 PSORS1C2Q9UIG4 136 aa6.6□□□□□ -1.35
CHD3-208ENST00000470531 SPRR1AP35321 89 aa6.6□□□□□ -1.35
CHD3-208ENST00000470531 C1orf134Q5TEV5 83 aa6.6□□□□□ -1.35
CHD3-208ENST00000470531 C9orf163Q8N9P6 203 aa6.6□□□□□ -1.35
CHD3-208ENST00000470531 CSAG1Q6PB30 78 aa6.58□□□□□ -1.36
CHD3-208ENST00000470531 C8orf17Q9NRJ1 99 aa6.58□□□□□ -1.36
CHD3-208ENST00000470531 LCE6AA0A183 80 aa6.58□□□□□ -1.36
CHD3-208ENST00000470531 NUPR2A6NF83 97 aa6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 81.5 ms