RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 PPDPFLQ8WWR9 84 aa11.5□□□□□ -0.57
COL9A3-204ENST00000463487 SPINK1P00995 79 aa11.49□□□□□ -0.57
COL9A3-204ENST00000463487 LINC01547P58512 204 aaPredicted RBP11.49□□□□□ -0.57
COL9A3-204ENST00000463487 Q8N377 158 aa11.48□□□□□ -0.57
COL9A3-204ENST00000463487 SMIM29Q86T20 159 aa11.45□□□□□ -0.58
COL9A3-204ENST00000463487 DNAL4O96015 105 aa11.44□□□□□ -0.58
COL9A3-204ENST00000463487 FAM218AQ96MZ4 157 aa11.44□□□□□ -0.58
COL9A3-204ENST00000463487 SCGB1C2P0DMR2 95 aa11.43□□□□□ -0.58
COL9A3-204ENST00000463487 RPS29P62273 56 aaKnown RBP11.43□□□□□ -0.58
COL9A3-204ENST00000463487 SNHG12Q9BXW3 62 aa11.43□□□□□ -0.58
COL9A3-204ENST00000463487 PRR4Q16378 134 aa11.41□□□□□ -0.58
COL9A3-204ENST00000463487 CLEC2BQ92478 149 aa11.41□□□□□ -0.58
COL9A3-204ENST00000463487 H3BQ85 93 aa11.4□□□□□ -0.58
COL9A3-204ENST00000463487 BATFQ16520 125 aa11.4□□□□□ -0.58
COL9A3-204ENST00000463487 CD164Q04900 197 aa11.37□□□□□ -0.59
COL9A3-204ENST00000463487 Q6JHZ5 121 aa11.37□□□□□ -0.59
COL9A3-204ENST00000463487 LIMD2Q9BT23 127 aa11.36□□□□□ -0.59
COL9A3-204ENST00000463487 LYRM7Q5U5X0 104 aa11.35□□□□□ -0.59
COL9A3-204ENST00000463487 ORMDL1Q9P0S3 153 aa11.35□□□□□ -0.59
COL9A3-204ENST00000463487 FABP2P12104 132 aa11.34□□□□□ -0.59
COL9A3-204ENST00000463487 IGLV8-61A0A075B6I0 122 aa11.33□□□□□ -0.6
COL9A3-204ENST00000463487 TRACP01848 142 aa11.33□□□□□ -0.6
COL9A3-204ENST00000463487 HRCT1Q6UXD1 115 aa11.33□□□□□ -0.6
COL9A3-204ENST00000463487 LST1O00453 97 aa11.32□□□□□ -0.6
COL9A3-204ENST00000463487 RETNLBQ9BQ08 111 aa11.32□□□□□ -0.6
COL9A3-204ENST00000463487 TMEM256-PLSCR3K7ERE1 68 aa11.31□□□□□ -0.6
COL9A3-204ENST00000463487 NDUFV3P56181 108 aaKnown RBP11.31□□□□□ -0.6
COL9A3-204ENST00000463487 FP248Q71RG6 208 aaPredicted RBP11.3□□□□□ -0.6
COL9A3-204ENST00000463487 HMCN2Q8NDA2 5059 aa11.29□□□□□ -0.6
COL9A3-204ENST00000463487 ATXN8Q156A1 80 aa11.28□□□□□ -0.6
COL9A3-204ENST00000463487 NAA38Q9BRA0 125 aaKnown RBP11.27□□□□□ -0.61
COL9A3-204ENST00000463487 IGLV7-46A0A075B6I9 117 aa11.25□□□□□ -0.61
COL9A3-204ENST00000463487 H3BMG7 143 aa11.25□□□□□ -0.61
COL9A3-204ENST00000463487 H3BUT2 72 aa11.25□□□□□ -0.61
COL9A3-204ENST00000463487 IGFL1Q6UW32 110 aa11.25□□□□□ -0.61
COL9A3-204ENST00000463487 TRBV20-1A0A075B6N2 111 aa11.23□□□□□ -0.61
COL9A3-204ENST00000463487 A0A0G2JQZ4 141 aa11.23□□□□□ -0.61
COL9A3-204ENST00000463487 TCL1BO95988 128 aa11.22□□□□□ -0.61
COL9A3-204ENST00000463487 UBE2V1Q13404 147 aa11.22□□□□□ -0.61
COL9A3-204ENST00000463487 Q5XG85 94 aa11.22□□□□□ -0.61
COL9A3-204ENST00000463487 C9orf118A6NHY6 69 aa11.21□□□□□ -0.61
COL9A3-204ENST00000463487 TAX1BP3O14907 124 aa11.18□□□□□ -0.62
COL9A3-204ENST00000463487 TPRXLQ17RH7 258 aa11.18□□□□□ -0.62
COL9A3-204ENST00000463487 TRBV7-7A0A0K0K1E9 115 aa11.17□□□□□ -0.62
COL9A3-204ENST00000463487 BAALC-AS2P0C853 105 aa11.17□□□□□ -0.62
COL9A3-204ENST00000463487 COL5A1-AS1Q5SY13 56 aa11.17□□□□□ -0.62
COL9A3-204ENST00000463487 TEN1Q86WV5 123 aa11.16□□□□□ -0.62
COL9A3-204ENST00000463487 ANKRD29Q8N6D5 301 aa11.16□□□□□ -0.62
COL9A3-204ENST00000463487 A0A1W2PPM0 123 aa11.15□□□□□ -0.62
COL9A3-204ENST00000463487 Q6Q795 121 aa11.15□□□□□ -0.62
COL9A3-204ENST00000463487 PCP4L1A6NKN8 68 aa11.14□□□□□ -0.63
COL9A3-204ENST00000463487 SS18L2Q9UHA2 77 aa11.14□□□□□ -0.63
COL9A3-204ENST00000463487 CDIP1Q9H305 208 aa11.13□□□□□ -0.63
COL9A3-204ENST00000463487 A0A1B0GV72 72 aa11.12□□□□□ -0.63
COL9A3-204ENST00000463487 RBM3P98179 157 aaKnown RBP11.11□□□□□ -0.63
COL9A3-204ENST00000463487 ASB16-AS1Q495Z4 193 aa11.1□□□□□ -0.63
COL9A3-204ENST00000463487 DSCR8Q96T75 97 aa11.1□□□□□ -0.63
COL9A3-204ENST00000463487 C9JAW5 83 aa11.09□□□□□ -0.63
COL9A3-204ENST00000463487 C1orf195Q5TG92 126 aa11.08□□□□□ -0.64
COL9A3-204ENST00000463487 JMJD7-PLA2G4BH0Y9G9 81 aa11.07□□□□□ -0.64
COL9A3-204ENST00000463487 TRBV7-4A0A0J9YYF1 115 aa11.06□□□□□ -0.64
COL9A3-204ENST00000463487 KRTAP13-3Q3SY46 172 aa11.06□□□□□ -0.64
COL9A3-204ENST00000463487 SPCS1Q9Y6A9 102 aa11.05□□□□□ -0.64
COL9A3-204ENST00000463487 A0A087WSZ3 146 aa11.04□□□□□ -0.64
COL9A3-204ENST00000463487 CCKP06307 115 aa11.04□□□□□ -0.64
COL9A3-204ENST00000463487 LRP2P98164 4655 aa11.03□□□□□ -0.64
COL9A3-204ENST00000463487 A0A1W2PNM2 257 aa11.03□□□□□ -0.64
COL9A3-204ENST00000463487 H3BT86 120 aa11.02□□□□□ -0.65
COL9A3-204ENST00000463487 C21orf62-AS1Q17RA5 79 aa11.01□□□□□ -0.65
COL9A3-204ENST00000463487 VPS25Q9BRG1 176 aa11□□□□□ -0.65
COL9A3-204ENST00000463487 PDE6GP18545 87 aa10.99□□□□□ -0.65
COL9A3-204ENST00000463487 LPAP08519 4548 aa10.98□□□□□ -0.65
COL9A3-204ENST00000463487 UBR4Q5T4S7 5183 aa10.98□□□□□ -0.65
COL9A3-204ENST00000463487 LOC110117498A0A087WWA1 95 aa10.94□□□□□ -0.66
COL9A3-204ENST00000463487 K7EP34 96 aa10.92□□□□□ -0.66
COL9A3-204ENST00000463487 MTURNQ8N3F0 131 aa10.92□□□□□ -0.66
COL9A3-204ENST00000463487 A0A1B0GW54 56 aa10.91□□□□□ -0.66
COL9A3-204ENST00000463487 C9orf92A6NGG3 77 aa10.91□□□□□ -0.66
COL9A3-204ENST00000463487 Q6ZQT0 140 aa10.91□□□□□ -0.66
COL9A3-204ENST00000463487 GTF2H5Q6ZYL4 71 aa10.91□□□□□ -0.66
COL9A3-204ENST00000463487 C14orf132Q9NPU4 83 aa10.91□□□□□ -0.66
COL9A3-204ENST00000463487 OBSCN-AS1Q96MR7 158 aa10.9□□□□□ -0.66
COL9A3-204ENST00000463487 XP32Q5T750 250 aa10.88□□□□□ -0.67
COL9A3-204ENST00000463487 SIGMAR1Q99720 223 aa10.87□□□□□ -0.67
COL9A3-204ENST00000463487 SEC61BP60468 96 aaKnown RBP10.86□□□□□ -0.67
COL9A3-204ENST00000463487 Q96NJ1 140 aa10.85□□□□□ -0.67
COL9A3-204ENST00000463487 IGKV4-1P06312 121 aa10.84□□□□□ -0.67
COL9A3-204ENST00000463487 LINC00472Q9H8W2 130 aa10.8□□□□□ -0.68
COL9A3-204ENST00000463487 J3KT08 172 aa10.79□□□□□ -0.68
COL9A3-204ENST00000463487 PRO0461Q9UI25 63 aa10.78□□□□□ -0.68
COL9A3-204ENST00000463487 SMCPP49901 116 aaPredicted RBP10.77□□□□□ -0.69
COL9A3-204ENST00000463487 F8W1H4 67 aa10.76□□□□□ -0.69
COL9A3-204ENST00000463487 DEFB116Q30KQ4 102 aa10.75□□□□□ -0.69
COL9A3-204ENST00000463487 NREPQ16612 68 aa10.73□□□□□ -0.69
COL9A3-204ENST00000463487 RPL37P61927 97 aaKnown RBP10.72□□□□□ -0.69
COL9A3-204ENST00000463487 NDUFB1O75438 58 aa10.7□□□□□ -0.7
COL9A3-204ENST00000463487 LINC00313P59037 77 aa10.7□□□□□ -0.7
COL9A3-204ENST00000463487 A0A0U1RQV1 116 aa10.69□□□□□ -0.7
COL9A3-204ENST00000463487 RNF213Q63HN8 5207 aa10.69□□□□□ -0.7
COL9A3-204ENST00000463487 IGHV6-1A0A0B4J1U7 121 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 169.6 ms