RNA–Protein interactions for RNA: ENST00000452372.1

COL9A3-202, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-202ENST00000452372 PRO1933Q9H354 126 aa11.34□□□□□ -0.59
COL9A3-202ENST00000452372 SNCGO76070 127 aa11.31□□□□□ -0.6
COL9A3-202ENST00000452372 IGLV7-46A0A075B6I9 117 aa11.3□□□□□ -0.6
COL9A3-202ENST00000452372 K7ERJ3 54 aa11.3□□□□□ -0.6
COL9A3-202ENST00000452372 LOC105371267A0A1B0GV96 52 aa11.29□□□□□ -0.6
COL9A3-202ENST00000452372 CD164Q04900 197 aa11.29□□□□□ -0.6
COL9A3-202ENST00000452372 FP248Q71RG6 208 aaPredicted RBP11.29□□□□□ -0.6
COL9A3-202ENST00000452372 PPDPFLQ8WWR9 84 aa11.29□□□□□ -0.6
COL9A3-202ENST00000452372 FAM218AQ96MZ4 157 aa11.29□□□□□ -0.6
COL9A3-202ENST00000452372 TRIAP1O43715 76 aa11.28□□□□□ -0.6
COL9A3-202ENST00000452372 A0A1B0GX51 115 aa11.27□□□□□ -0.61
COL9A3-202ENST00000452372 HRCT1Q6UXD1 115 aa11.27□□□□□ -0.61
COL9A3-202ENST00000452372 F8WEM9 126 aa11.26□□□□□ -0.61
COL9A3-202ENST00000452372 OCIAD2Q56VL3 154 aa11.26□□□□□ -0.61
COL9A3-202ENST00000452372 TPRXLQ17RH7 258 aa11.24□□□□□ -0.61
COL9A3-202ENST00000452372 PSMB2P49721 201 aa11.23□□□□□ -0.61
COL9A3-202ENST00000452372 LIMD2Q9BT23 127 aa11.23□□□□□ -0.61
COL9A3-202ENST00000452372 SNHG12Q9BXW3 62 aa11.23□□□□□ -0.61
COL9A3-202ENST00000452372 IGLV8-61A0A075B6I0 122 aa11.22□□□□□ -0.61
COL9A3-202ENST00000452372 A0A0G2JQZ4 141 aa11.22□□□□□ -0.61
COL9A3-202ENST00000452372 MUC17Q685J3 4493 aa11.22□□□□□ -0.61
COL9A3-202ENST00000452372 COX6CP09669 75 aa11.21□□□□□ -0.61
COL9A3-202ENST00000452372 Q6JHZ5 121 aa11.2□□□□□ -0.62
COL9A3-202ENST00000452372 CLEC2BQ92478 149 aa11.2□□□□□ -0.62
COL9A3-202ENST00000452372 M0R143 59 aa11.19□□□□□ -0.62
COL9A3-202ENST00000452372 GHRHP01286 108 aa11.19□□□□□ -0.62
COL9A3-202ENST00000452372 TSTD3H0UI37 97 aa11.18□□□□□ -0.62
COL9A3-202ENST00000452372 Q5XG85 94 aa11.18□□□□□ -0.62
COL9A3-202ENST00000452372 FAT4Q6V0I7 4981 aa11.17□□□□□ -0.62
COL9A3-202ENST00000452372 CDIP1Q9H305 208 aa11.17□□□□□ -0.62
COL9A3-202ENST00000452372 IGFL1Q6UW32 110 aa11.15□□□□□ -0.62
COL9A3-202ENST00000452372 NDUFV3P56181 108 aaKnown RBP11.14□□□□□ -0.63
COL9A3-202ENST00000452372 KRTAP13-3Q3SY46 172 aa11.14□□□□□ -0.63
COL9A3-202ENST00000452372 DNAL4O96015 105 aa11.13□□□□□ -0.63
COL9A3-202ENST00000452372 H3BUT2 72 aa11.12□□□□□ -0.63
COL9A3-202ENST00000452372 SCGB1C2P0DMR2 95 aa11.11□□□□□ -0.63
COL9A3-202ENST00000452372 FABP2P12104 132 aa11.11□□□□□ -0.63
COL9A3-202ENST00000452372 ORMDL1Q9P0S3 153 aa11.1□□□□□ -0.63
COL9A3-202ENST00000452372 H3BQ85 93 aa11.09□□□□□ -0.63
COL9A3-202ENST00000452372 TCL1BO95988 128 aa11.08□□□□□ -0.64
COL9A3-202ENST00000452372 LCE2AQ5TA79 106 aaPredicted RBP11.08□□□□□ -0.64
COL9A3-202ENST00000452372 TRBV7-7A0A0K0K1E9 115 aa11.07□□□□□ -0.64
COL9A3-202ENST00000452372 H3BMG7 143 aa11.07□□□□□ -0.64
COL9A3-202ENST00000452372 LST1O00453 97 aa11.07□□□□□ -0.64
COL9A3-202ENST00000452372 TRACP01848 142 aa11.07□□□□□ -0.64
COL9A3-202ENST00000452372 C1orf195Q5TG92 126 aa11.07□□□□□ -0.64
COL9A3-202ENST00000452372 A0A0U1RQV1 116 aa11.05□□□□□ -0.64
COL9A3-202ENST00000452372 TMEM256-PLSCR3K7ERE1 68 aa11.05□□□□□ -0.64
COL9A3-202ENST00000452372 Q6Q795 121 aa11.03□□□□□ -0.64
COL9A3-202ENST00000452372 ASB16-AS1Q495Z4 193 aa11.02□□□□□ -0.65
COL9A3-202ENST00000452372 TEN1Q86WV5 123 aa11□□□□□ -0.65
COL9A3-202ENST00000452372 NAA38Q9BRA0 125 aaKnown RBP11□□□□□ -0.65
COL9A3-202ENST00000452372 UBE2V1Q13404 147 aa10.99□□□□□ -0.65
COL9A3-202ENST00000452372 BATFQ16520 125 aa10.99□□□□□ -0.65
COL9A3-202ENST00000452372 KRTAP9-2Q9BYQ4 174 aa10.97□□□□□ -0.65
COL9A3-202ENST00000452372 ATXN8Q156A1 80 aa10.95□□□□□ -0.66
COL9A3-202ENST00000452372 ANKRD29Q8N6D5 301 aa10.95□□□□□ -0.66
COL9A3-202ENST00000452372 BAALC-AS2P0C853 105 aa10.94□□□□□ -0.66
COL9A3-202ENST00000452372 XP32Q5T750 250 aa10.94□□□□□ -0.66
COL9A3-202ENST00000452372 SS18L2Q9UHA2 77 aa10.94□□□□□ -0.66
COL9A3-202ENST00000452372 A0A1W2PNM2 257 aa10.93□□□□□ -0.66
COL9A3-202ENST00000452372 A0A1B0GV72 72 aa10.92□□□□□ -0.66
COL9A3-202ENST00000452372 C9orf92A6NGG3 77 aa10.92□□□□□ -0.66
COL9A3-202ENST00000452372 LYRM7Q5U5X0 104 aa10.91□□□□□ -0.66
COL9A3-202ENST00000452372 A0A087WSZ3 146 aa10.9□□□□□ -0.66
COL9A3-202ENST00000452372 TRBV20-1A0A075B6N2 111 aa10.88□□□□□ -0.67
COL9A3-202ENST00000452372 TRBV7-4A0A0J9YYF1 115 aa10.88□□□□□ -0.67
COL9A3-202ENST00000452372 C9orf118A6NHY6 69 aa10.88□□□□□ -0.67
COL9A3-202ENST00000452372 SEC61BP60468 96 aaKnown RBP10.88□□□□□ -0.67
COL9A3-202ENST00000452372 RBM3P98179 157 aaKnown RBP10.88□□□□□ -0.67
COL9A3-202ENST00000452372 TAX1BP3O14907 124 aa10.87□□□□□ -0.67
COL9A3-202ENST00000452372 CCKP06307 115 aa10.84□□□□□ -0.67
COL9A3-202ENST00000452372 KRTAP4-1Q9BYQ7 146 aa10.84□□□□□ -0.67
COL9A3-202ENST00000452372 DSCR8Q96T75 97 aa10.83□□□□□ -0.68
COL9A3-202ENST00000452372 A0A1W2PPM0 123 aa10.81□□□□□ -0.68
COL9A3-202ENST00000452372 Q96NJ1 140 aa10.81□□□□□ -0.68
COL9A3-202ENST00000452372 C9JAW5 83 aa10.79□□□□□ -0.68
COL9A3-202ENST00000452372 JMJD7-PLA2G4BH0Y9G9 81 aa10.78□□□□□ -0.68
COL9A3-202ENST00000452372 VPS25Q9BRG1 176 aa10.76□□□□□ -0.69
COL9A3-202ENST00000452372 COL5A1-AS1Q5SY13 56 aa10.73□□□□□ -0.69
COL9A3-202ENST00000452372 OBSCN-AS1Q96MR7 158 aa10.73□□□□□ -0.69
COL9A3-202ENST00000452372 RPL37P61927 97 aaKnown RBP10.72□□□□□ -0.69
COL9A3-202ENST00000452372 PCOTHQ58A44 107 aa10.72□□□□□ -0.69
COL9A3-202ENST00000452372 LINC00472Q9H8W2 130 aa10.72□□□□□ -0.69
COL9A3-202ENST00000452372 LOC110117498A0A087WWA1 95 aa10.71□□□□□ -0.69
COL9A3-202ENST00000452372 C21orf62-AS1Q17RA5 79 aa10.71□□□□□ -0.69
COL9A3-202ENST00000452372 PDE6GP18545 87 aa10.7□□□□□ -0.7
COL9A3-202ENST00000452372 Q6ZQT0 140 aa10.7□□□□□ -0.7
COL9A3-202ENST00000452372 H3BT86 120 aa10.69□□□□□ -0.7
COL9A3-202ENST00000452372 IGKV4-1P06312 121 aa10.69□□□□□ -0.7
COL9A3-202ENST00000452372 SIGMAR1Q99720 223 aa10.69□□□□□ -0.7
COL9A3-202ENST00000452372 C14orf132Q9NPU4 83 aa10.67□□□□□ -0.7
COL9A3-202ENST00000452372 SPCS1Q9Y6A9 102 aa10.67□□□□□ -0.7
COL9A3-202ENST00000452372 A0A1B0GW54 56 aa10.66□□□□□ -0.7
COL9A3-202ENST00000452372 DEFB116Q30KQ4 102 aa10.66□□□□□ -0.7
COL9A3-202ENST00000452372 PCP4L1A6NKN8 68 aa10.65□□□□□ -0.7
COL9A3-202ENST00000452372 MTURNQ8N3F0 131 aa10.65□□□□□ -0.7
COL9A3-202ENST00000452372 KRTAP9-6A0A140TA67 174 aa10.64□□□□□ -0.71
COL9A3-202ENST00000452372 Q75L30 129 aa10.63□□□□□ -0.71
COL9A3-202ENST00000452372 LCE2CQ5TA81 110 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 102.8 ms