RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 UBE2BP63146 152 aa6.04□□□□□ -1.44
CUX1-206ENST00000437600 ETDCA0A1B0GVM5 59 aa6.04□□□□□ -1.44
CUX1-206ENST00000437600 A0A096LNI7 61 aa6.04□□□□□ -1.44
CUX1-206ENST00000437600 PRLHP81277 87 aa6.04□□□□□ -1.44
CUX1-206ENST00000437600 BCE1O60756 84 aa6.03□□□□□ -1.44
CUX1-206ENST00000437600 WWC2-AS2Q96NR7 200 aa6.03□□□□□ -1.44
CUX1-206ENST00000437600 LY6G6CO95867 125 aa6.02□□□□□ -1.45
CUX1-206ENST00000437600 Q6ZRX8 168 aa6.02□□□□□ -1.45
CUX1-206ENST00000437600 HECTD4Q9Y4D8 3996 aa6.01□□□□□ -1.45
CUX1-206ENST00000437600 BPY2O14599 106 aa6.01□□□□□ -1.45
CUX1-206ENST00000437600 FAM229BQ4G0N7 80 aa6.01□□□□□ -1.45
CUX1-206ENST00000437600 KRTAP11-1Q8IUC1 163 aa6.01□□□□□ -1.45
CUX1-206ENST00000437600 HIGD2AQ9BW72 106 aa6.01□□□□□ -1.45
CUX1-206ENST00000437600 DEFB116Q30KQ4 102 aa6.01□□□□□ -1.45
CUX1-206ENST00000437600 NBDYA0A0U1RRE5 68 aa6□□□□□ -1.45
CUX1-206ENST00000437600 KRTAP4-16G5E9R7 235 aaPredicted RBP6□□□□□ -1.45
CUX1-206ENST00000437600 NDUFC1O43677 76 aa6□□□□□ -1.45
CUX1-206ENST00000437600 NREPQ16612 68 aa6□□□□□ -1.45
CUX1-206ENST00000437600 DNAH6Q9C0G6 4158 aa6□□□□□ -1.45
CUX1-206ENST00000437600 TLX1NBP0CAT3 122 aa5.99□□□□□ -1.45
CUX1-206ENST00000437600 CXCL6P80162 114 aa5.99□□□□□ -1.45
CUX1-206ENST00000437600 PHF5AQ7RTV0 110 aaKnown RBP5.99□□□□□ -1.45
CUX1-206ENST00000437600 TMEM254Q8TBM7 123 aa5.99□□□□□ -1.45
CUX1-206ENST00000437600 KTN1-AS1Q86SY8 53 aa5.99□□□□□ -1.45
CUX1-206ENST00000437600 C8orf87E5RJ46 101 aa5.98□□□□□ -1.45
CUX1-206ENST00000437600 PRR26Q8N8Z3 221 aa5.98□□□□□ -1.45
CUX1-206ENST00000437600 A0A1W2PNM2 257 aa5.98□□□□□ -1.45
CUX1-206ENST00000437600 PDE6GP18545 87 aa5.98□□□□□ -1.45
CUX1-206ENST00000437600 ATP5EP56381 51 aaPredicted RBP5.98□□□□□ -1.45
CUX1-206ENST00000437600 PANO1I0J062 215 aa5.97□□□□□ -1.45
CUX1-206ENST00000437600 C1orf137Q5JT78 98 aa5.97□□□□□ -1.45
CUX1-206ENST00000437600 REG3GQ6UW15 175 aa5.97□□□□□ -1.45
CUX1-206ENST00000437600 SPRR1AP35321 89 aa5.95□□□□□ -1.46
CUX1-206ENST00000437600 DHRS4-AS1Q9P1J3 65 aa5.95□□□□□ -1.46
CUX1-206ENST00000437600 PKHD1P08F94 4074 aa5.95□□□□□ -1.46
CUX1-206ENST00000437600 ALMS1Q8TCU4 4167 aa5.95□□□□□ -1.46
CUX1-206ENST00000437600 DNAH17Q9UFH2 4485 aa5.95□□□□□ -1.46
CUX1-206ENST00000437600 LRCOL1A6NCL2 159 aa5.94□□□□□ -1.46
CUX1-206ENST00000437600 FAT2Q9NYQ8 4349 aa5.94□□□□□ -1.46
CUX1-206ENST00000437600 PRYO14603 147 aa5.94□□□□□ -1.46
CUX1-206ENST00000437600 LINC00476Q8WZB0 136 aa5.94□□□□□ -1.46
CUX1-206ENST00000437600 PLA2G2DQ9UNK4 145 aa5.94□□□□□ -1.46
CUX1-206ENST00000437600 IGLV5-48A0A075B6I7 105 aa5.93□□□□□ -1.46
CUX1-206ENST00000437600 C16orf90A8MZG2 172 aa5.93□□□□□ -1.46
CUX1-206ENST00000437600 Q6ZRN7 208 aaPredicted RBP5.93□□□□□ -1.46
CUX1-206ENST00000437600 DNAH11Q96DT5 4516 aa5.93□□□□□ -1.46
CUX1-206ENST00000437600 RYR3Q15413 4870 aa5.93□□□□□ -1.46
CUX1-206ENST00000437600 H3BQ85 93 aa5.93□□□□□ -1.46
CUX1-206ENST00000437600 SMIM29Q86T20 159 aa5.93□□□□□ -1.46
CUX1-206ENST00000437600 CNBPP62633 177 aaKnown RBP5.92□□□□□ -1.46
CUX1-206ENST00000437600 IGLV5-37A0A075B6J1 123 aa5.91□□□□□ -1.46
CUX1-206ENST00000437600 DNAH5Q8TE73 4624 aa5.91□□□□□ -1.46
CUX1-206ENST00000437600 IGKV4-1P06312 121 aa5.91□□□□□ -1.46
CUX1-206ENST00000437600 PKD1P98161 4303 aa5.9□□□□□ -1.46
CUX1-206ENST00000437600 RYR2Q92736 4967 aa5.9□□□□□ -1.46
CUX1-206ENST00000437600 TNP2Q05952 138 aa5.9□□□□□ -1.46
CUX1-206ENST00000437600 FAM30AQ9NZY2 134 aa5.89□□□□□ -1.47
CUX1-206ENST00000437600 RPL37AP61513 92 aaKnown RBP5.89□□□□□ -1.47
CUX1-206ENST00000437600 IGFL1Q6UW32 110 aa5.89□□□□□ -1.47
CUX1-206ENST00000437600 C9orf163Q8N9P6 203 aa5.89□□□□□ -1.47
CUX1-206ENST00000437600 OCR1Q9BZK8 76 aa5.89□□□□□ -1.47
CUX1-206ENST00000437600 A0A087WSZ3 146 aa5.88□□□□□ -1.47
CUX1-206ENST00000437600 C14orf177Q52M58 125 aa5.88□□□□□ -1.47
CUX1-206ENST00000437600 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.88□□□□□ -1.47
CUX1-206ENST00000437600 A0A087WTM6 91 aa5.88□□□□□ -1.47
CUX1-206ENST00000437600 Q8NBF4 154 aa5.88□□□□□ -1.47
CUX1-206ENST00000437600 K7EQZ3 153 aa5.88□□□□□ -1.47
CUX1-206ENST00000437600 Q6ZR54 194 aa5.88□□□□□ -1.47
CUX1-206ENST00000437600 A8MU10 97 aa5.87□□□□□ -1.47
CUX1-206ENST00000437600 UBE2AP49459 152 aa5.87□□□□□ -1.47
CUX1-206ENST00000437600 ANAPC11Q9NYG5 84 aa5.86□□□□□ -1.47
CUX1-206ENST00000437600 DSCR10P59022 87 aa5.86□□□□□ -1.47
CUX1-206ENST00000437600 DNAH8Q96JB1 4490 aa5.86□□□□□ -1.47
CUX1-206ENST00000437600 PSPHP1O15172 72 aa5.85□□□□□ -1.47
CUX1-206ENST00000437600 NDUFS5O43920 106 aa5.85□□□□□ -1.47
CUX1-206ENST00000437600 C1orf134Q5TEV5 83 aa5.85□□□□□ -1.47
CUX1-206ENST00000437600 RTL8CO15255 209 aa5.84□□□□□ -1.47
CUX1-206ENST00000437600 Q1T7F1 81 aa5.84□□□□□ -1.47
CUX1-206ENST00000437600 hDV103S1A0JD37 113 aa5.83□□□□□ -1.48
CUX1-206ENST00000437600 WFDC13Q8IUB5 93 aa5.83□□□□□ -1.48
CUX1-206ENST00000437600 IGLV9-49A0A0B4J1Y8 123 aa5.83□□□□□ -1.48
CUX1-206ENST00000437600 A8MUN3 132 aa5.82□□□□□ -1.48
CUX1-206ENST00000437600 PRR4Q16378 134 aa5.82□□□□□ -1.48
CUX1-206ENST00000437600 SPRR4Q96PI1 79 aa5.82□□□□□ -1.48
CUX1-206ENST00000437600 C1orf64Q8NEQ6 169 aa5.82□□□□□ -1.48
CUX1-206ENST00000437600 IGLV5-52A0A0A0MRZ9 124 aa5.8□□□□□ -1.48
CUX1-206ENST00000437600 KRTAP10-2P60368 255 aa5.8□□□□□ -1.48
CUX1-206ENST00000437600 SPTSSBQ8NFR3 76 aa5.8□□□□□ -1.48
CUX1-206ENST00000437600 SPACA4Q8TDM5 124 aa5.79□□□□□ -1.48
CUX1-206ENST00000437600 LRP1BQ9NZR2 4599 aa5.79□□□□□ -1.48
CUX1-206ENST00000437600 TRAV22A0A0B4J277 110 aa5.79□□□□□ -1.48
CUX1-206ENST00000437600 LCA10Q71F78 164 aa5.79□□□□□ -1.48
CUX1-206ENST00000437600 LCE6AA0A183 80 aa5.78□□□□□ -1.48
CUX1-206ENST00000437600 C7orf65Q6ZTY9 151 aa5.77□□□□□ -1.49
CUX1-206ENST00000437600 DYNC1H1Q14204 4646 aaKnown RBP5.76□□□□□ -1.49
CUX1-206ENST00000437600 A6NN06 94 aa5.76□□□□□ -1.49
CUX1-206ENST00000437600 PSORS1C2Q9UIG4 136 aa5.75□□□□□ -1.49
CUX1-206ENST00000437600 HCG22E2RYF7 251 aa5.74□□□□□ -1.49
CUX1-206ENST00000437600 H0Y9J4 135 aa5.74□□□□□ -1.49
CUX1-206ENST00000437600 ATP11AUNQ6ZP68 121 aa5.73□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 80.9 ms