RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 RPL37P61927 97 aaKnown RBP4.56□□□□□ -1.68
VPS53-204ENST00000437048 LINC00472Q9H8W2 130 aa4.56□□□□□ -1.68
VPS53-204ENST00000437048 MMP24-AS1A0A0U1RRL7 71 aa4.56□□□□□ -1.68
VPS53-204ENST00000437048 CSAG1Q6PB30 78 aa4.56□□□□□ -1.68
VPS53-204ENST00000437048 SPATA8Q6RVD6 105 aa4.55□□□□□ -1.68
VPS53-204ENST00000437048 PRR26Q8N8Z3 221 aa4.55□□□□□ -1.68
VPS53-204ENST00000437048 WWC2-AS2Q96NR7 200 aa4.55□□□□□ -1.68
VPS53-204ENST00000437048 ZNF575Q86XF7 245 aa4.55□□□□□ -1.68
VPS53-204ENST00000437048 A0A087WTM6 91 aa4.53□□□□□ -1.68
VPS53-204ENST00000437048 GIG44P09565 113 aaPredicted RBP4.53□□□□□ -1.68
VPS53-204ENST00000437048 FAM168BA1KXE4 195 aa4.53□□□□□ -1.68
VPS53-204ENST00000437048 LCE6AA0A183 80 aa4.52□□□□□ -1.69
VPS53-204ENST00000437048 ZCCHC13Q8WW36 166 aaKnown RBP4.52□□□□□ -1.69
VPS53-204ENST00000437048 NBEAL2Q6ZNJ1 2754 aa4.52□□□□□ -1.69
VPS53-204ENST00000437048 CFAP54Q96N23 3096 aa4.52□□□□□ -1.69
VPS53-204ENST00000437048 SEC61BP60468 96 aaKnown RBP4.51□□□□□ -1.69
VPS53-204ENST00000437048 GOLGB1Q14789 3259 aaKnown RBP4.51□□□□□ -1.69
VPS53-204ENST00000437048 FLNCQ14315 2725 aa4.5□□□□□ -1.69
VPS53-204ENST00000437048 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP4.5□□□□□ -1.69
VPS53-204ENST00000437048 A0A096LNT2 108 aa4.5□□□□□ -1.69
VPS53-204ENST00000437048 DSPP15924 2871 aaKnown RBP4.5□□□□□ -1.69
VPS53-204ENST00000437048 ITPR1Q14643 2758 aa4.49□□□□□ -1.69
VPS53-204ENST00000437048 RPS29P62273 56 aaKnown RBP4.48□□□□□ -1.69
VPS53-204ENST00000437048 CHD9Q3L8U1 2897 aa4.47□□□□□ -1.69
VPS53-204ENST00000437048 UBR5O95071 2799 aaPredicted RBP4.47□□□□□ -1.69
VPS53-204ENST00000437048 PLAC8Q9NZF1 115 aa4.47□□□□□ -1.69
VPS53-204ENST00000437048 NOTCH2NLQ7Z3S9 236 aa4.47□□□□□ -1.69
VPS53-204ENST00000437048 SPINK7P58062 85 aa4.46□□□□□ -1.7
VPS53-204ENST00000437048 A6NN06 94 aa4.46□□□□□ -1.7
VPS53-204ENST00000437048 Q5W150 140 aa4.45□□□□□ -1.7
VPS53-204ENST00000437048 ANAPC11Q9NYG5 84 aa4.45□□□□□ -1.7
VPS53-204ENST00000437048 CYSTM1Q9H1C7 97 aa4.45□□□□□ -1.7
VPS53-204ENST00000437048 M0QZ58 72 aa4.44□□□□□ -1.7
VPS53-204ENST00000437048 H1FX-AS1Q4G0G2 97 aa4.44□□□□□ -1.7
VPS53-204ENST00000437048 LAMA2P24043 3122 aaKnown RBP4.44□□□□□ -1.7
VPS53-204ENST00000437048 Q8N1X5 172 aa4.44□□□□□ -1.7
VPS53-204ENST00000437048 A0A0D9SG42 100 aa4.43□□□□□ -1.7
VPS53-204ENST00000437048 S4R3F8 94 aa4.43□□□□□ -1.7
VPS53-204ENST00000437048 KRTAP29-1A8MX34 341 aaPredicted RBP4.42□□□□□ -1.7
VPS53-204ENST00000437048 LRBAP50851 2863 aa4.42□□□□□ -1.7
VPS53-204ENST00000437048 R4GN34 69 aa4.42□□□□□ -1.7
VPS53-204ENST00000437048 Q6ZSA8 131 aa4.42□□□□□ -1.7
VPS53-204ENST00000437048 J3QL48 77 aa4.41□□□□□ -1.7
VPS53-204ENST00000437048 PRAC1Q96KF2 57 aa4.41□□□□□ -1.7
VPS53-204ENST00000437048 KRTAP25-1Q3LHN0 102 aa4.41□□□□□ -1.7
VPS53-204ENST00000437048 PP632Q6XCG6 107 aa4.4□□□□□ -1.7
VPS53-204ENST00000437048 CHD7Q9P2D1 2997 aa4.4□□□□□ -1.7
VPS53-204ENST00000437048 NF1P21359 2839 aa4.39□□□□□ -1.71
VPS53-204ENST00000437048 CELSR2Q9HCU4 2923 aa4.39□□□□□ -1.71
VPS53-204ENST00000437048 OXTP01178 125 aa4.38□□□□□ -1.71
VPS53-204ENST00000437048 FRYLO94915 3013 aa4.38□□□□□ -1.71
VPS53-204ENST00000437048 EP400Q96L91 3159 aa4.38□□□□□ -1.71
VPS53-204ENST00000437048 UTRNP46939 3433 aa4.38□□□□□ -1.71
VPS53-204ENST00000437048 TRIOO75962 3097 aa4.37□□□□□ -1.71
VPS53-204ENST00000437048 PANO1I0J062 215 aa4.36□□□□□ -1.71
VPS53-204ENST00000437048 KRTAP4-16G5E9R7 235 aaPredicted RBP4.36□□□□□ -1.71
VPS53-204ENST00000437048 CASC10Q5T4H9 136 aa4.35□□□□□ -1.71
VPS53-204ENST00000437048 K7EIL1 84 aa4.35□□□□□ -1.71
VPS53-204ENST00000437048 KALRNO60229 2985 aa4.35□□□□□ -1.71
VPS53-204ENST00000437048 KRTAP24-1Q3LI83 254 aa4.34□□□□□ -1.71
VPS53-204ENST00000437048 KRTAP26-1Q6PEX3 210 aa4.34□□□□□ -1.71
VPS53-204ENST00000437048 PCNTO95613 3336 aa4.33□□□□□ -1.72
VPS53-204ENST00000437048 C9orf92A6NGG3 77 aa4.32□□□□□ -1.72
VPS53-204ENST00000437048 ASH1LQ9NR48 2969 aaKnown RBP4.32□□□□□ -1.72
VPS53-204ENST00000437048 TENM1Q9UKZ4 2725 aa4.32□□□□□ -1.72
VPS53-204ENST00000437048 MGAQ8IWI9 3026 aa4.3□□□□□ -1.72
VPS53-204ENST00000437048 C5orf42Q9H799 3197 aa4.3□□□□□ -1.72
VPS53-204ENST00000437048 TENM3Q9P273 2699 aa4.3□□□□□ -1.72
VPS53-204ENST00000437048 NIPBLQ6KC79 2804 aaeCLIP4.29□□□□□ -1.72
VPS53-204ENST00000437048 KRTAP10-11P60412 298 aa4.28□□□□□ -1.72
VPS53-204ENST00000437048 FRYQ5TBA9 3013 aa4.28□□□□□ -1.72
VPS53-204ENST00000437048 HIVEP1P15822 2718 aa4.28□□□□□ -1.72
VPS53-204ENST00000437048 CRYBG3Q68DQ2 2970 aa4.27□□□□□ -1.73
VPS53-204ENST00000437048 A8MU10 97 aa4.25□□□□□ -1.73
VPS53-204ENST00000437048 PLAC4Q8WY50 150 aa4.24□□□□□ -1.73
VPS53-204ENST00000437048 SMR3BP02814 79 aaPredicted RBP4.24□□□□□ -1.73
VPS53-204ENST00000437048 PDZD2O15018 2839 aa4.23□□□□□ -1.73
VPS53-204ENST00000437048 Q8NDZ9 215 aa4.23□□□□□ -1.73
VPS53-204ENST00000437048 KRTAP10-3P60369 221 aa4.22□□□□□ -1.73
VPS53-204ENST00000437048 DMXL2Q8TDJ6 3036 aa4.21□□□□□ -1.73
VPS53-204ENST00000437048 KRTAP11-1Q8IUC1 163 aa4.2□□□□□ -1.74
VPS53-204ENST00000437048 TNP1P09430 55 aa4.2□□□□□ -1.74
VPS53-204ENST00000437048 TACC2O95359 2948 aa4.2□□□□□ -1.74
VPS53-204ENST00000437048 TNRC18O15417 2968 aaPredicted RBP4.19□□□□□ -1.74
VPS53-204ENST00000437048 M0R2T5 61 aa4.19□□□□□ -1.74
VPS53-204ENST00000437048 COL12A1Q99715 3063 aa4.19□□□□□ -1.74
VPS53-204ENST00000437048 C20orf166-AS1Q96NR2 134 aa4.19□□□□□ -1.74
VPS53-204ENST00000437048 ADM2Q7Z4H4 148 aa4.18□□□□□ -1.74
VPS53-204ENST00000437048 VPS13AQ96RL7 3174 aa4.18□□□□□ -1.74
VPS53-204ENST00000437048 PRUNE2Q8WUY3 3088 aa4.17□□□□□ -1.74
VPS53-204ENST00000437048 NDUFAF8A1L188 74 aa4.16□□□□□ -1.74
VPS53-204ENST00000437048 DCHS2Q6V1P9 2916 aa4.15□□□□□ -1.75
VPS53-204ENST00000437048 KRTAP1-3Q8IUG1 177 aa4.14□□□□□ -1.75
VPS53-204ENST00000437048 ZZEF1O43149 2961 aa4.14□□□□□ -1.75
VPS53-204ENST00000437048 KRTAP1-1Q07627 177 aa4.13□□□□□ -1.75
VPS53-204ENST00000437048 NBEAQ8NFP9 2946 aa4.12□□□□□ -1.75
VPS53-204ENST00000437048 A8MUU9 505 aa4.12□□□□□ -1.75
VPS53-204ENST00000437048 BRCA2P51587 3418 aa4.11□□□□□ -1.75
VPS53-204ENST00000437048 FREM2Q5SZK8 3169 aa4.11□□□□□ -1.75
VPS53-204ENST00000437048 KRTAP13-1Q8IUC0 172 aa4.09□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms