RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 IGLV1-50A0A075B6I6 118 aa5.3□□□□□ -1.56
CD44-208ENST00000428726 HYDINQ4G0P3 5121 aa5.3□□□□□ -1.56
CD44-208ENST00000428726 TRAV7A0A075B6U4 112 aa5.29□□□□□ -1.56
CD44-208ENST00000428726 C5orf47Q569G3 176 aa5.29□□□□□ -1.56
CD44-208ENST00000428726 Q6ZRX8 168 aa5.29□□□□□ -1.56
CD44-208ENST00000428726 SPRR1AP35321 89 aa5.29□□□□□ -1.56
CD44-208ENST00000428726 RPL37AP61513 92 aaKnown RBP5.29□□□□□ -1.56
CD44-208ENST00000428726 CXCL6P80162 114 aa5.29□□□□□ -1.56
CD44-208ENST00000428726 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.28□□□□□ -1.56
CD44-208ENST00000428726 KRTAP4-16G5E9R7 235 aaPredicted RBP5.28□□□□□ -1.56
CD44-208ENST00000428726 REG3GQ6UW15 175 aa5.28□□□□□ -1.56
CD44-208ENST00000428726 DNAH11Q96DT5 4516 aa5.27□□□□□ -1.57
CD44-208ENST00000428726 A0A0U1RQV1 116 aa5.27□□□□□ -1.57
CD44-208ENST00000428726 FAM229BQ4G0N7 80 aa5.27□□□□□ -1.57
CD44-208ENST00000428726 IGLV9-49A0A0B4J1Y8 123 aa5.27□□□□□ -1.57
CD44-208ENST00000428726 C1orf137Q5JT78 98 aa5.27□□□□□ -1.57
CD44-208ENST00000428726 LINC00336Q6ZUF6 198 aa5.27□□□□□ -1.57
CD44-208ENST00000428726 SMIM29Q86T20 159 aa5.26□□□□□ -1.57
CD44-208ENST00000428726 A0A1W2PNM2 257 aa5.26□□□□□ -1.57
CD44-208ENST00000428726 TMEM254Q8TBM7 123 aa5.26□□□□□ -1.57
CD44-208ENST00000428726 PKIGQ9Y2B9 76 aa5.26□□□□□ -1.57
CD44-208ENST00000428726 IGLV5-48A0A075B6I7 105 aa5.26□□□□□ -1.57
CD44-208ENST00000428726 NBDYA0A0U1RRE5 68 aa5.26□□□□□ -1.57
CD44-208ENST00000428726 BCE1O60756 84 aa5.26□□□□□ -1.57
CD44-208ENST00000428726 RPS28P62857 69 aaKnown RBP5.26□□□□□ -1.57
CD44-208ENST00000428726 B9D2Q9BPU9 175 aa5.25□□□□□ -1.57
CD44-208ENST00000428726 IGKV4-1P06312 121 aa5.25□□□□□ -1.57
CD44-208ENST00000428726 UBE2AP49459 152 aa5.25□□□□□ -1.57
CD44-208ENST00000428726 EPM2AB3EWF7 344 aa5.24□□□□□ -1.57
CD44-208ENST00000428726 CNBPP62633 177 aaKnown RBP5.24□□□□□ -1.57
CD44-208ENST00000428726 DNAH17Q9UFH2 4485 aa5.24□□□□□ -1.57
CD44-208ENST00000428726 A0A087WSZ3 146 aa5.24□□□□□ -1.57
CD44-208ENST00000428726 C16orf90A8MZG2 172 aa5.24□□□□□ -1.57
CD44-208ENST00000428726 FP248Q71RG6 208 aaPredicted RBP5.24□□□□□ -1.57
CD44-208ENST00000428726 WFDC13Q8IUB5 93 aa5.23□□□□□ -1.57
CD44-208ENST00000428726 BRK1Q8WUW1 75 aa5.23□□□□□ -1.57
CD44-208ENST00000428726 A0A1B0GW54 56 aa5.23□□□□□ -1.57
CD44-208ENST00000428726 C14orf177Q52M58 125 aa5.23□□□□□ -1.57
CD44-208ENST00000428726 LINC00476Q8WZB0 136 aa5.23□□□□□ -1.57
CD44-208ENST00000428726 K7EQZ3 153 aa5.22□□□□□ -1.57
CD44-208ENST00000428726 KLKP1Q107X0 134 aa5.21□□□□□ -1.57
CD44-208ENST00000428726 DNAH8Q96JB1 4490 aa5.21□□□□□ -1.58
CD44-208ENST00000428726 HECTD4Q9Y4D8 3996 aa5.21□□□□□ -1.58
CD44-208ENST00000428726 FAM229AH3BQW9 127 aa5.2□□□□□ -1.58
CD44-208ENST00000428726 SERP1Q9Y6X1 66 aa5.2□□□□□ -1.58
CD44-208ENST00000428726 IGFL1Q6UW32 110 aa5.2□□□□□ -1.58
CD44-208ENST00000428726 NUPR2A6NF83 97 aa5.19□□□□□ -1.58
CD44-208ENST00000428726 Q8NBF4 154 aa5.18□□□□□ -1.58
CD44-208ENST00000428726 H3BS24 57 aa5.18□□□□□ -1.58
CD44-208ENST00000428726 C9orf163Q8N9P6 203 aa5.18□□□□□ -1.58
CD44-208ENST00000428726 SPRR4Q96PI1 79 aa5.18□□□□□ -1.58
CD44-208ENST00000428726 OCR1Q9BZK8 76 aa5.18□□□□□ -1.58
CD44-208ENST00000428726 PSPHP1O15172 72 aa5.17□□□□□ -1.58
CD44-208ENST00000428726 RTL8CO15255 209 aa5.17□□□□□ -1.58
CD44-208ENST00000428726 A0A087WTM6 91 aa5.16□□□□□ -1.58
CD44-208ENST00000428726 SPINK6Q6UWN8 80 aa5.16□□□□□ -1.58
CD44-208ENST00000428726 LRP1BQ9NZR2 4599 aa5.16□□□□□ -1.58
CD44-208ENST00000428726 Q6ZRN7 208 aaPredicted RBP5.16□□□□□ -1.58
CD44-208ENST00000428726 DSCR10P59022 87 aa5.15□□□□□ -1.58
CD44-208ENST00000428726 PKHD1P08F94 4074 aa5.15□□□□□ -1.58
CD44-208ENST00000428726 KRTAP10-2P60368 255 aa5.15□□□□□ -1.58
CD44-208ENST00000428726 SMIM26A0A096LP01 95 aa5.15□□□□□ -1.59
CD44-208ENST00000428726 IGLV5-52A0A0A0MRZ9 124 aa5.14□□□□□ -1.59
CD44-208ENST00000428726 H0Y9J4 135 aa5.14□□□□□ -1.59
CD44-208ENST00000428726 FAT2Q9NYQ8 4349 aa5.14□□□□□ -1.59
CD44-208ENST00000428726 PSORS1C2Q9UIG4 136 aa5.13□□□□□ -1.59
CD44-208ENST00000428726 IGLV8-61A0A075B6I0 122 aa5.13□□□□□ -1.59
CD44-208ENST00000428726 MOBPQ13875 183 aa5.12□□□□□ -1.59
CD44-208ENST00000428726 LINC00208Q96KT6 92 aa5.11□□□□□ -1.59
CD44-208ENST00000428726 SPRR1BP22528 89 aa5.11□□□□□ -1.59
CD44-208ENST00000428726 C1orf134Q5TEV5 83 aa5.11□□□□□ -1.59
CD44-208ENST00000428726 C1orf64Q8NEQ6 169 aa5.11□□□□□ -1.59
CD44-208ENST00000428726 DYNC2H1Q8NCM8 4307 aaKnown RBP5.11□□□□□ -1.59
CD44-208ENST00000428726 DNAH5Q8TE73 4624 aa5.11□□□□□ -1.59
CD44-208ENST00000428726 A8MU10 97 aa5.1□□□□□ -1.59
CD44-208ENST00000428726 RETNLBQ9BQ08 111 aa5.1□□□□□ -1.59
CD44-208ENST00000428726 FAT1Q14517 4588 aa5.1□□□□□ -1.59
CD44-208ENST00000428726 CIRBP-AS1Q8TBR5 109 aa5.1□□□□□ -1.59
CD44-208ENST00000428726 NDUFC1O43677 76 aa5.1□□□□□ -1.59
CD44-208ENST00000428726 SMR3BP02814 79 aaPredicted RBP5.09□□□□□ -1.6
CD44-208ENST00000428726 HCG22E2RYF7 251 aa5.08□□□□□ -1.6
CD44-208ENST00000428726 NDUFS5O43920 106 aa5.07□□□□□ -1.6
CD44-208ENST00000428726 SPACA4Q8TDM5 124 aa5.07□□□□□ -1.6
CD44-208ENST00000428726 PRO0628Q9UI54 55 aa5.07□□□□□ -1.6
CD44-208ENST00000428726 FLG2Q5D862 2391 aaPredicted RBP5.07□□□□□ -1.6
CD44-208ENST00000428726 KMT2CQ8NEZ4 4911 aaKnown RBP5.06□□□□□ -1.6
CD44-208ENST00000428726 IGHV6-1A0A0B4J1U7 121 aa5.06□□□□□ -1.6
CD44-208ENST00000428726 PCOTHQ58A44 107 aa5.06□□□□□ -1.6
CD44-208ENST00000428726 A0A087X002 238 aa5.06□□□□□ -1.6
CD44-208ENST00000428726 NOTCH2NLQ7Z3S9 236 aa5.06□□□□□ -1.6
CD44-208ENST00000428726 KRTAP13-1Q8IUC0 172 aa5.06□□□□□ -1.6
CD44-208ENST00000428726 VPS13BQ7Z7G8 4022 aa5.04□□□□□ -1.6
CD44-208ENST00000428726 A8MUN3 132 aa5.04□□□□□ -1.6
CD44-208ENST00000428726 Q6ZR54 194 aa5.04□□□□□ -1.6
CD44-208ENST00000428726 ATP5EP56381 51 aaPredicted RBP5.03□□□□□ -1.6
CD44-208ENST00000428726 KRTAP10-1P60331 282 aa5.03□□□□□ -1.6
CD44-208ENST00000428726 hDV103S1A0JD37 113 aa5.03□□□□□ -1.6
CD44-208ENST00000428726 CASC2Q6XLA1 102 aa5.03□□□□□ -1.6
CD44-208ENST00000428726 ALMS1Q8TCU4 4167 aa5.02□□□□□ -1.61
CD44-208ENST00000428726 LCE6AA0A183 80 aa5.02□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 78.5 ms