RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 TRAV13-2A0A0B4J235 113 aa6.11□□□□□ -1.43
USP4-204ENST00000416417 A4D1N5 150 aa6.1□□□□□ -1.43
USP4-204ENST00000416417 TCL1BO95988 128 aa6.1□□□□□ -1.43
USP4-204ENST00000416417 Q6ZVH6 145 aa6.1□□□□□ -1.43
USP4-204ENST00000416417 LINC00575Q6W349 94 aa6.09□□□□□ -1.43
USP4-204ENST00000416417 Q6ZQY7 126 aa6.09□□□□□ -1.43
USP4-204ENST00000416417 NHP2Q9NX24 153 aaKnown RBP6.09□□□□□ -1.43
USP4-204ENST00000416417 F8WEM9 126 aa6.09□□□□□ -1.44
USP4-204ENST00000416417 FLGP20930 4061 aaPredicted RBP6.08□□□□□ -1.44
USP4-204ENST00000416417 IGFL1Q6UW32 110 aa6.08□□□□□ -1.44
USP4-204ENST00000416417 hADV29S1A0JD25 119 aa6.06□□□□□ -1.44
USP4-204ENST00000416417 VAMP3Q15836 100 aa6.06□□□□□ -1.44
USP4-204ENST00000416417 Q6Q795 121 aa6.06□□□□□ -1.44
USP4-204ENST00000416417 OBSCN-AS1Q96MR7 158 aa6.06□□□□□ -1.44
USP4-204ENST00000416417 TRBV7-7A0A0K0K1E9 115 aa6.05□□□□□ -1.44
USP4-204ENST00000416417 OCIAD2Q56VL3 154 aa6.04□□□□□ -1.44
USP4-204ENST00000416417 CLEC2BQ92478 149 aa6.04□□□□□ -1.44
USP4-204ENST00000416417 H3BUT2 72 aa6.03□□□□□ -1.44
USP4-204ENST00000416417 Q6JHZ5 121 aa6.03□□□□□ -1.44
USP4-204ENST00000416417 SNRPEP62304 92 aaKnown RBP6.01□□□□□ -1.45
USP4-204ENST00000416417 HIST3H2BBQ8N257 126 aa6.01□□□□□ -1.45
USP4-204ENST00000416417 HIST1H2BLQ99880 126 aa6.01□□□□□ -1.45
USP4-204ENST00000416417 ATP11AUNQ6ZP68 121 aa6□□□□□ -1.45
USP4-204ENST00000416417 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP5.99□□□□□ -1.45
USP4-204ENST00000416417 Q75L30 129 aa5.99□□□□□ -1.45
USP4-204ENST00000416417 Q96NJ1 140 aa5.99□□□□□ -1.45
USP4-204ENST00000416417 HSBP1L1C9JCN9 74 aa5.99□□□□□ -1.45
USP4-204ENST00000416417 SNHG12Q9BXW3 62 aa5.99□□□□□ -1.45
USP4-204ENST00000416417 LST1O00453 97 aa5.98□□□□□ -1.45
USP4-204ENST00000416417 S100A2P29034 98 aa5.98□□□□□ -1.45
USP4-204ENST00000416417 HIST1H4GQ99525 98 aa5.98□□□□□ -1.45
USP4-204ENST00000416417 SVIPQ8NHG7 77 aa5.96□□□□□ -1.46
USP4-204ENST00000416417 C14orf144Q96I85 54 aa5.96□□□□□ -1.46
USP4-204ENST00000416417 A0A1B0GV90 55 aa5.95□□□□□ -1.46
USP4-204ENST00000416417 BVES-AS1Q5T3Y7 98 aa5.95□□□□□ -1.46
USP4-204ENST00000416417 FAM218AQ96MZ4 157 aa5.94□□□□□ -1.46
USP4-204ENST00000416417 SCGB1D1O95968 90 aa5.93□□□□□ -1.46
USP4-204ENST00000416417 CFC1P0CG37 223 aa5.93□□□□□ -1.46
USP4-204ENST00000416417 PPDPFLQ8WWR9 84 aa5.93□□□□□ -1.46
USP4-204ENST00000416417 PCP4P48539 62 aa5.92□□□□□ -1.46
USP4-204ENST00000416417 DSCR10P59022 87 aa5.92□□□□□ -1.46
USP4-204ENST00000416417 A0A087WSZ3 146 aa5.91□□□□□ -1.46
USP4-204ENST00000416417 COX8AP10176 69 aa5.91□□□□□ -1.46
USP4-204ENST00000416417 C20orf166-AS1Q96NR2 134 aa5.91□□□□□ -1.46
USP4-204ENST00000416417 NDUFV3P56181 108 aaKnown RBP5.9□□□□□ -1.46
USP4-204ENST00000416417 RAB37Q96AX2 223 aa5.9□□□□□ -1.46
USP4-204ENST00000416417 KRTAP9-8Q9BYQ0 159 aa5.9□□□□□ -1.46
USP4-204ENST00000416417 A8MUU9 505 aa5.89□□□□□ -1.47
USP4-204ENST00000416417 TSTD3H0UI37 97 aa5.89□□□□□ -1.47
USP4-204ENST00000416417 SS18L2Q9UHA2 77 aa5.89□□□□□ -1.47
USP4-204ENST00000416417 TMEM238LA0A1B0GVL6 79 aa5.89□□□□□ -1.47
USP4-204ENST00000416417 PYY3Q5JQD4 70 aa5.89□□□□□ -1.47
USP4-204ENST00000416417 TEN1Q86WV5 123 aa5.89□□□□□ -1.47
USP4-204ENST00000416417 USH2AO75445 5202 aa5.88□□□□□ -1.47
USP4-204ENST00000416417 A0A1B0GV72 72 aa5.87□□□□□ -1.47
USP4-204ENST00000416417 KRTAP16-1A8MUX0 517 aa5.87□□□□□ -1.47
USP4-204ENST00000416417 H3BMG7 143 aa5.87□□□□□ -1.47
USP4-204ENST00000416417 FABP2P12104 132 aa5.87□□□□□ -1.47
USP4-204ENST00000416417 A0A1W2PNM2 257 aa5.86□□□□□ -1.47
USP4-204ENST00000416417 SIGMAR1Q99720 223 aa5.86□□□□□ -1.47
USP4-204ENST00000416417 TRBV20-1A0A075B6N2 111 aa5.85□□□□□ -1.47
USP4-204ENST00000416417 H0YGX0 51 aa5.85□□□□□ -1.47
USP4-204ENST00000416417 DLEU1O43261 78 aa5.85□□□□□ -1.47
USP4-204ENST00000416417 PAM16Q9Y3D7 125 aa5.85□□□□□ -1.47
USP4-204ENST00000416417 SSPOA2VEC9 5147 aa5.85□□□□□ -1.47
USP4-204ENST00000416417 A0A0B4J2C4 111 aa5.84□□□□□ -1.47
USP4-204ENST00000416417 C21orf62-AS1Q17RA5 79 aa5.84□□□□□ -1.47
USP4-204ENST00000416417 C2orf91Q6ZV80 131 aa5.84□□□□□ -1.47
USP4-204ENST00000416417 SNCGO76070 127 aa5.84□□□□□ -1.48
USP4-204ENST00000416417 SPATA45Q537H7 98 aa5.84□□□□□ -1.48
USP4-204ENST00000416417 NOTCH2NLQ7Z3S9 236 aa5.84□□□□□ -1.48
USP4-204ENST00000416417 DEFB116Q30KQ4 102 aa5.83□□□□□ -1.48
USP4-204ENST00000416417 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.82□□□□□ -1.48
USP4-204ENST00000416417 HIGD1BQ9P298 99 aa5.82□□□□□ -1.48
USP4-204ENST00000416417 FAM236DA0A1B0GTK5 79 aa5.81□□□□□ -1.48
USP4-204ENST00000416417 TRIAP1O43715 76 aa5.81□□□□□ -1.48
USP4-204ENST00000416417 MT2AP02795 61 aa5.81□□□□□ -1.48
USP4-204ENST00000416417 IGKV4-1P06312 121 aa5.81□□□□□ -1.48
USP4-204ENST00000416417 FAM236CP0DP71 79 aa5.81□□□□□ -1.48
USP4-204ENST00000416417 CEND1Q8N111 149 aa5.81□□□□□ -1.48
USP4-204ENST00000416417 FXYD2P54710 66 aa5.8□□□□□ -1.48
USP4-204ENST00000416417 LINC00313P59037 77 aa5.8□□□□□ -1.48
USP4-204ENST00000416417 PRO1854Q9UHT4 67 aa5.8□□□□□ -1.48
USP4-204ENST00000416417 KRTAP9-7A8MTY7 169 aa5.79□□□□□ -1.48
USP4-204ENST00000416417 M0R143 59 aa5.79□□□□□ -1.48
USP4-204ENST00000416417 ANKRD29Q8N6D5 301 aa5.79□□□□□ -1.48
USP4-204ENST00000416417 VAMP8Q9BV40 100 aa5.79□□□□□ -1.48
USP4-204ENST00000416417 MT1FP04733 61 aa5.78□□□□□ -1.48
USP4-204ENST00000416417 HRES1P13985 223 aa5.78□□□□□ -1.48
USP4-204ENST00000416417 A0A1B0GX51 115 aa5.77□□□□□ -1.49
USP4-204ENST00000416417 IGHV6-1A0A0B4J1U7 121 aa5.76□□□□□ -1.49
USP4-204ENST00000416417 K7ERJ3 54 aa5.76□□□□□ -1.49
USP4-204ENST00000416417 TRBV7-4A0A0J9YYF1 115 aa5.75□□□□□ -1.49
USP4-204ENST00000416417 LCE2BO14633 110 aa5.75□□□□□ -1.49
USP4-204ENST00000416417 A6NJY4 79 aa5.74□□□□□ -1.49
USP4-204ENST00000416417 MPLKIPQ8TAP9 179 aa5.74□□□□□ -1.49
USP4-204ENST00000416417 ORMDL1Q9P0S3 153 aa5.74□□□□□ -1.49
USP4-204ENST00000416417 GHRHP01286 108 aa5.74□□□□□ -1.49
USP4-204ENST00000416417 PSMB2P49721 201 aa5.74□□□□□ -1.49
USP4-204ENST00000416417 KRTAP10-10P60014 251 aa5.74□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 99.4 ms