RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 PKDREJQ9NTG1 2253 aa1.86□□□□□ -2.11
VPS54-204ENST00000416400 LINC01556Q5JQF7 62 aa1.86□□□□□ -2.11
VPS54-204ENST00000416400 KRTAP26-1Q6PEX3 210 aa1.86□□□□□ -2.11
VPS54-204ENST00000416400 WNK1Q9H4A3 2382 aa1.85□□□□□ -2.11
VPS54-204ENST00000416400 FBN1P35555 2871 aaKnown RBP1.85□□□□□ -2.11
VPS54-204ENST00000416400 SPTBN2O15020 2390 aa1.85□□□□□ -2.11
VPS54-204ENST00000416400 CACNA1HO95180 2353 aa1.85□□□□□ -2.11
VPS54-204ENST00000416400 TECTAO75443 2155 aa1.85□□□□□ -2.11
VPS54-204ENST00000416400 NUPR2A6NF83 97 aa1.84□□□□□ -2.11
VPS54-204ENST00000416400 RP1L1Q8IWN7 2480 aaPredicted RBP1.83□□□□□ -2.12
VPS54-204ENST00000416400 COL6A6A6NMZ7 2263 aa1.83□□□□□ -2.12
VPS54-204ENST00000416400 LY6G6CO95867 125 aa1.83□□□□□ -2.12
VPS54-204ENST00000416400 CNOT1A5YKK6 2376 aaKnown RBP1.83□□□□□ -2.12
VPS54-204ENST00000416400 APC2O95996 2303 aa1.82□□□□□ -2.12
VPS54-204ENST00000416400 HTN3P15516 51 aa1.82□□□□□ -2.12
VPS54-204ENST00000416400 Q6ZRN7 208 aaPredicted RBP1.82□□□□□ -2.12
VPS54-204ENST00000416400 PCNX1Q96RV3 2341 aa1.82□□□□□ -2.12
VPS54-204ENST00000416400 C2CD3Q4AC94 2353 aa1.81□□□□□ -2.12
VPS54-204ENST00000416400 ANKHD1Q8IWZ3 2542 aaKnown RBP1.81□□□□□ -2.12
VPS54-204ENST00000416400 COX6B2Q6YFQ2 88 aa1.81□□□□□ -2.12
VPS54-204ENST00000416400 MED13LQ71F56 2210 aa1.81□□□□□ -2.12
VPS54-204ENST00000416400 PTPRZ1P23471 2315 aaPredicted RBP1.8□□□□□ -2.12
VPS54-204ENST00000416400 DEFB135Q30KP9 77 aa1.8□□□□□ -2.12
VPS54-204ENST00000416400 SSBP3-AS1Q7Z2R9 100 aa1.8□□□□□ -2.12
VPS54-204ENST00000416400 AKAP6Q13023 2319 aa1.79□□□□□ -2.12
VPS54-204ENST00000416400 PRLHP81277 87 aa1.79□□□□□ -2.12
VPS54-204ENST00000416400 Q96NJ1 140 aa1.79□□□□□ -2.12
VPS54-204ENST00000416400 CUL9Q8IWT3 2517 aa1.78□□□□□ -2.12
VPS54-204ENST00000416400 FN1P02751 2386 aaKnown RBP1.78□□□□□ -2.12
VPS54-204ENST00000416400 DEFB113Q30KQ7 82 aa1.78□□□□□ -2.12
VPS54-204ENST00000416400 CEP290O15078 2479 aa1.78□□□□□ -2.12
VPS54-204ENST00000416400 CR1P17927 2039 aa1.78□□□□□ -2.13
VPS54-204ENST00000416400 SPTAN1Q13813 2472 aaKnown RBP1.77□□□□□ -2.13
VPS54-204ENST00000416400 DEFB4AO15263 64 aa1.77□□□□□ -2.13
VPS54-204ENST00000416400 DEFB123Q8N688 67 aa1.77□□□□□ -2.13
VPS54-204ENST00000416400 CRIPTQ9P021 101 aa1.77□□□□□ -2.13
VPS54-204ENST00000416400 EP300Q09472 2414 aaPredicted RBP1.77□□□□□ -2.13
VPS54-204ENST00000416400 A0A096LNI7 61 aa1.76□□□□□ -2.13
VPS54-204ENST00000416400 H1FX-AS1Q4G0G2 97 aa1.76□□□□□ -2.13
VPS54-204ENST00000416400 PCNTO95613 3336 aa1.76□□□□□ -2.13
VPS54-204ENST00000416400 ZDBF2Q9HCK1 2354 aa1.76□□□□□ -2.13
VPS54-204ENST00000416400 WDR87Q6ZQQ6 2873 aa1.75□□□□□ -2.13
VPS54-204ENST00000416400 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP1.74□□□□□ -2.133e-7■■■■■ 32.6
VPS54-204ENST00000416400 ZFHX2Q9C0A1 2572 aaPredicted RBP1.74□□□□□ -2.13
VPS54-204ENST00000416400 RPL37P61927 97 aaKnown RBP1.74□□□□□ -2.13
VPS54-204ENST00000416400 Q6ZSA8 131 aa1.74□□□□□ -2.13
VPS54-204ENST00000416400 EP400Q96L91 3159 aa1.73□□□□□ -2.13
VPS54-204ENST00000416400 A0A087WTM6 91 aa1.73□□□□□ -2.13
VPS54-204ENST00000416400 SPTA1P02549 2419 aa1.73□□□□□ -2.13
VPS54-204ENST00000416400 H0YAA0 97 aa1.72□□□□□ -2.13
VPS54-204ENST00000416400 K7EIL1 84 aa1.72□□□□□ -2.13
VPS54-204ENST00000416400 SPINK6Q6UWN8 80 aa1.72□□□□□ -2.13
VPS54-204ENST00000416400 DNAH12Q6ZR08 3092 aa1.72□□□□□ -2.13
VPS54-204ENST00000416400 SPINK1P00995 79 aa1.71□□□□□ -2.14
VPS54-204ENST00000416400 UTRNP46939 3433 aa1.71□□□□□ -2.14
VPS54-204ENST00000416400 ACACAQ13085 2346 aa1.71□□□□□ -2.14
VPS54-204ENST00000416400 CSPG4Q6UVK1 2322 aa1.71□□□□□ -2.14
VPS54-204ENST00000416400 ZFHX3Q15911 3703 aa1.7□□□□□ -2.14
VPS54-204ENST00000416400 CENPFP49454 3210 aa1.7□□□□□ -2.14
VPS54-204ENST00000416400 NCOR1O75376 2440 aa1.7□□□□□ -2.14
VPS54-204ENST00000416400 CEP350Q5VT06 3117 aa1.7□□□□□ -2.14
VPS54-204ENST00000416400 NBASA2RRP1 2371 aa1.7□□□□□ -2.14
VPS54-204ENST00000416400 NBDYA0A0U1RRE5 68 aa1.68□□□□□ -2.14
VPS54-204ENST00000416400 KRTAP21-3Q3LHN1 58 aa1.68□□□□□ -2.14
VPS54-204ENST00000416400 UBE2DNLQ8IWF7 75 aa1.68□□□□□ -2.14
VPS54-204ENST00000416400 GVINP1Q7Z2Y8 2422 aa1.68□□□□□ -2.14
VPS54-204ENST00000416400 SPG11Q96JI7 2443 aa1.68□□□□□ -2.14
VPS54-204ENST00000416400 CHD9Q3L8U1 2897 aa1.68□□□□□ -2.14
VPS54-204ENST00000416400 GOLGB1Q14789 3259 aaKnown RBP1.67□□□□□ -2.14
VPS54-204ENST00000416400 OTOGLQ3ZCN5 2332 aa1.66□□□□□ -2.14
VPS54-204ENST00000416400 RPS29P62273 56 aaKnown RBP1.66□□□□□ -2.14
VPS54-204ENST00000416400 PLAC4Q8WY50 150 aa1.66□□□□□ -2.14
VPS54-204ENST00000416400 RIF1Q5UIP0 2472 aaKnown RBP1.66□□□□□ -2.14
VPS54-204ENST00000416400 CHD7Q9P2D1 2997 aa1.66□□□□□ -2.14
VPS54-204ENST00000416400 RANBP2P49792 3224 aaKnown RBP1.66□□□□□ -2.14
VPS54-204ENST00000416400 TRANK1O15050 2925 aa1.65□□□□□ -2.14
VPS54-204ENST00000416400 TNRC18O15417 2968 aaPredicted RBP1.65□□□□□ -2.15
VPS54-204ENST00000416400 KMT2BQ9UMN6 2715 aaPredicted RBP1.64□□□□□ -2.15
VPS54-204ENST00000416400 DNAH14Q0VDD8 3507 aa1.64□□□□□ -2.15
VPS54-204ENST00000416400 TLN1Q9Y490 2541 aaKnown RBP1.64□□□□□ -2.15
VPS54-204ENST00000416400 HTTP42858 3142 aa1.64□□□□□ -2.15
VPS54-204ENST00000416400 KRTAP21-2Q3LI59 83 aa1.64□□□□□ -2.15
VPS54-204ENST00000416400 NBEAQ8NFP9 2946 aa1.64□□□□□ -2.15
VPS54-204ENST00000416400 SZT2Q5T011 3432 aa1.63□□□□□ -2.15
VPS54-204ENST00000416400 APLNQ9ULZ1 77 aa1.63□□□□□ -2.15
VPS54-204ENST00000416400 ABCA2Q9BZC7 2435 aa1.63□□□□□ -2.15
VPS54-204ENST00000416400 ZZEF1O43149 2961 aa1.63□□□□□ -2.15
VPS54-204ENST00000416400 ANKRD17O75179 2603 aaKnown RBP1.63□□□□□ -2.15
VPS54-204ENST00000416400 TLN2Q9Y4G6 2542 aa1.63□□□□□ -2.15
VPS54-204ENST00000416400 HIVEP3Q5T1R4 2406 aa1.62□□□□□ -2.15
VPS54-204ENST00000416400 MYO9AB2RTY4 2548 aa1.62□□□□□ -2.15
VPS54-204ENST00000416400 M0QZ58 72 aa1.62□□□□□ -2.15
VPS54-204ENST00000416400 S4R3F8 94 aa1.61□□□□□ -2.15
VPS54-204ENST00000416400 MUC6Q6W4X9 2439 aa1.6□□□□□ -2.15
VPS54-204ENST00000416400 UNC80Q8N2C7 3258 aa1.6□□□□□ -2.15
VPS54-204ENST00000416400 ZFYVE26Q68DK2 2539 aa1.6□□□□□ -2.15
VPS54-204ENST00000416400 USP9XQ93008 2570 aaPredicted RBP1.59□□□□□ -2.15
VPS54-204ENST00000416400 SONP18583 2426 aaKnown RBP1.59□□□□□ -2.15
VPS54-204ENST00000416400 PIEZO2Q9H5I5 2752 aa1.59□□□□□ -2.15
VPS54-204ENST00000416400 NAV2Q8IVL1 2488 aa1.59□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms