RNA–Protein interactions for RNA: ENST00000409025.5

USP39-202, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5 BASIC

Gene USP39, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-202ENST00000409025 A0A1W2PNM2 257 aa11.65□□□□□ -0.54
USP39-202ENST00000409025 Q8NBF4 154 aa11.64□□□□□ -0.55
USP39-202ENST00000409025 IGLV8-61A0A075B6I0 122 aa11.63□□□□□ -0.55
USP39-202ENST00000409025 HIST1H4AP62805 103 aaKnown RBP11.63□□□□□ -0.55
USP39-202ENST00000409025 FRAS1Q86XX4 4008 aa11.62□□□□□ -0.55
USP39-202ENST00000409025 CXCL6P80162 114 aa11.61□□□□□ -0.55
USP39-202ENST00000409025 NREPQ16612 68 aa11.61□□□□□ -0.55
USP39-202ENST00000409025 IGFL1Q6UW32 110 aa11.6□□□□□ -0.55
USP39-202ENST00000409025 SPRR4Q96PI1 79 aa11.6□□□□□ -0.55
USP39-202ENST00000409025 FAM30AQ9NZY2 134 aa11.6□□□□□ -0.55
USP39-202ENST00000409025 A0A087WVE0 104 aa11.58□□□□□ -0.55
USP39-202ENST00000409025 HYDINQ4G0P3 5121 aa11.58□□□□□ -0.56
USP39-202ENST00000409025 CIRBP-AS1Q8TBR5 109 aa11.57□□□□□ -0.56
USP39-202ENST00000409025 ZNF861PO60384 105 aa11.56□□□□□ -0.56
USP39-202ENST00000409025 ZNF706Q9Y5V0 76 aaPredicted RBP11.56□□□□□ -0.56
USP39-202ENST00000409025 CRYGAP11844 174 aa11.56□□□□□ -0.56
USP39-202ENST00000409025 KRTAP10-1P60331 282 aa11.56□□□□□ -0.56
USP39-202ENST00000409025 LCE6AA0A183 80 aa11.55□□□□□ -0.56
USP39-202ENST00000409025 Q6ZSA8 131 aa11.55□□□□□ -0.56
USP39-202ENST00000409025 A0A0G2JQZ4 141 aa11.54□□□□□ -0.56
USP39-202ENST00000409025 SCXQ7RTU7 201 aa11.54□□□□□ -0.56
USP39-202ENST00000409025 DNAH11Q96DT5 4516 aa11.53□□□□□ -0.56
USP39-202ENST00000409025 LINC00483Q53H64 154 aa11.52□□□□□ -0.57
USP39-202ENST00000409025 IGLV7-43P04211 117 aa11.51□□□□□ -0.57
USP39-202ENST00000409025 ATOX1O00244 68 aa11.5□□□□□ -0.57
USP39-202ENST00000409025 BPY2O14599 106 aa11.5□□□□□ -0.57
USP39-202ENST00000409025 DNAH5Q8TE73 4624 aa11.5□□□□□ -0.57
USP39-202ENST00000409025 DNAH8Q96JB1 4490 aa11.5□□□□□ -0.57
USP39-202ENST00000409025 LINC00336Q6ZUF6 198 aa11.48□□□□□ -0.57
USP39-202ENST00000409025 FAT2Q9NYQ8 4349 aa11.47□□□□□ -0.57
USP39-202ENST00000409025 IGLV9-49A0A0B4J1Y8 123 aa11.46□□□□□ -0.58
USP39-202ENST00000409025 C9orf153Q5TBE3 101 aa11.45□□□□□ -0.58
USP39-202ENST00000409025 PKD1P98161 4303 aa11.45□□□□□ -0.58
USP39-202ENST00000409025 A0A087WSZ3 146 aa11.45□□□□□ -0.58
USP39-202ENST00000409025 SRRM2Q9UQ35 2752 aaKnown RBP11.44□□□□□ -0.58
USP39-202ENST00000409025 RPL37AP61513 92 aaKnown RBP11.43□□□□□ -0.58
USP39-202ENST00000409025 CCDC179H3BU77 68 aa11.41□□□□□ -0.58
USP39-202ENST00000409025 IGKV4-1P06312 121 aa11.41□□□□□ -0.58
USP39-202ENST00000409025 Q8N9L7 120 aa11.41□□□□□ -0.58
USP39-202ENST00000409025 SACSQ9NZJ4 4579 aa11.4□□□□□ -0.58
USP39-202ENST00000409025 ANAPC11Q9NYG5 84 aa11.39□□□□□ -0.59
USP39-202ENST00000409025 MOBPQ13875 183 aa11.37□□□□□ -0.59
USP39-202ENST00000409025 COX7CP15954 63 aa11.36□□□□□ -0.59
USP39-202ENST00000409025 UQCRQO14949 82 aa11.35□□□□□ -0.59
USP39-202ENST00000409025 SERP2Q8N6R1 65 aa11.35□□□□□ -0.59
USP39-202ENST00000409025 DSCR10P59022 87 aa11.35□□□□□ -0.59
USP39-202ENST00000409025 A0A1B0GVY2 172 aa11.31□□□□□ -0.6
USP39-202ENST00000409025 DEFB116Q30KQ4 102 aa11.31□□□□□ -0.6
USP39-202ENST00000409025 SMIM20Q8N5G0 67 aa11.3□□□□□ -0.6
USP39-202ENST00000409025 K7EQZ3 153 aa11.29□□□□□ -0.6
USP39-202ENST00000409025 HRCT1Q6UXD1 115 aa11.29□□□□□ -0.6
USP39-202ENST00000409025 LINC00472Q9H8W2 130 aa11.27□□□□□ -0.6
USP39-202ENST00000409025 KMT2CQ8NEZ4 4911 aaKnown RBP11.27□□□□□ -0.6
USP39-202ENST00000409025 TRAV7A0A075B6U4 112 aa11.26□□□□□ -0.61
USP39-202ENST00000409025 SS18L2Q9UHA2 77 aa11.25□□□□□ -0.61
USP39-202ENST00000409025 SSBP3-AS1Q7Z2R9 100 aa11.23□□□□□ -0.61
USP39-202ENST00000409025 J3KT08 172 aa11.22□□□□□ -0.61
USP39-202ENST00000409025 FAM229BQ4G0N7 80 aa11.21□□□□□ -0.62
USP39-202ENST00000409025 LRP1BQ9NZR2 4599 aa11.2□□□□□ -0.62
USP39-202ENST00000409025 RYR2Q92736 4967 aa11.2□□□□□ -0.62
USP39-202ENST00000409025 A8MWP4 228 aa11.19□□□□□ -0.62
USP39-202ENST00000409025 HCG22E2RYF7 251 aa11.19□□□□□ -0.62
USP39-202ENST00000409025 CD164Q04900 197 aa11.18□□□□□ -0.62
USP39-202ENST00000409025 Q96NJ1 140 aa11.17□□□□□ -0.62
USP39-202ENST00000409025 PRR15Q8IV56 129 aa11.17□□□□□ -0.62
USP39-202ENST00000409025 A0A087X002 238 aa11.16□□□□□ -0.62
USP39-202ENST00000409025 KRTAP1-4P0C5Y4 121 aa11.14□□□□□ -0.63
USP39-202ENST00000409025 KRTAP13-2Q52LG2 175 aa11.14□□□□□ -0.63
USP39-202ENST00000409025 OCR1Q9BZK8 76 aa11.14□□□□□ -0.63
USP39-202ENST00000409025 PKHD1P08F94 4074 aa11.13□□□□□ -0.63
USP39-202ENST00000409025 NDUFB1O75438 58 aa11.13□□□□□ -0.63
USP39-202ENST00000409025 SPINK6Q6UWN8 80 aa11.13□□□□□ -0.63
USP39-202ENST00000409025 SMR3BP02814 79 aaPredicted RBP11.12□□□□□ -0.63
USP39-202ENST00000409025 C20orf197Q8N268 126 aa11.11□□□□□ -0.63
USP39-202ENST00000409025 WFDC13Q8IUB5 93 aa11.11□□□□□ -0.63
USP39-202ENST00000409025 DYNC1H1Q14204 4646 aaKnown RBP11.1□□□□□ -0.63
USP39-202ENST00000409025 VPS13BQ7Z7G8 4022 aa11.09□□□□□ -0.63
USP39-202ENST00000409025 PLA2G1BP04054 148 aaKnown RBP11.09□□□□□ -0.63
USP39-202ENST00000409025 RYR3Q15413 4870 aa11.08□□□□□ -0.64
USP39-202ENST00000409025 CDK2AP2O75956 126 aa11.07□□□□□ -0.64
USP39-202ENST00000409025 CASC2Q6XLA1 102 aa11.07□□□□□ -0.64
USP39-202ENST00000409025 CYSTM1Q9H1C7 97 aa11.07□□□□□ -0.64
USP39-202ENST00000409025 KRTAP29-1A8MX34 341 aaPredicted RBP11.06□□□□□ -0.64
USP39-202ENST00000409025 ASB16-AS1Q495Z4 193 aa11.03□□□□□ -0.64
USP39-202ENST00000409025 KLKP1Q107X0 134 aa11.03□□□□□ -0.64
USP39-202ENST00000409025 MMP24-AS1A0A0U1RRL7 71 aa11.02□□□□□ -0.65
USP39-202ENST00000409025 A0A1B0GVX0 72 aa11.01□□□□□ -0.65
USP39-202ENST00000409025 TYMSOSQ8TAI1 123 aa11.01□□□□□ -0.65
USP39-202ENST00000409025 TMEM254Q8TBM7 123 aa11.01□□□□□ -0.65
USP39-202ENST00000409025 SNURFQ9Y675 71 aa11.01□□□□□ -0.65
USP39-202ENST00000409025 IGHV6-1A0A0B4J1U7 121 aa10.99□□□□□ -0.65
USP39-202ENST00000409025 Q5XG85 94 aa10.99□□□□□ -0.65
USP39-202ENST00000409025 hDV103S1A0JD37 113 aa10.98□□□□□ -0.65
USP39-202ENST00000409025 C8orf17Q9NRJ1 99 aa10.98□□□□□ -0.65
USP39-202ENST00000409025 KRTAP10-4P60372 401 aaPredicted RBP10.97□□□□□ -0.65
USP39-202ENST00000409025 C4orf48Q5BLP8 95 aa10.97□□□□□ -0.65
USP39-202ENST00000409025 APOBP04114 4563 aaKnown RBP10.96□□□□□ -0.65
USP39-202ENST00000409025 TMEM258P61165 79 aa10.96□□□□□ -0.65
USP39-202ENST00000409025 LIMD2Q9BT23 127 aa10.96□□□□□ -0.65
USP39-202ENST00000409025 A0A0U1RQV1 116 aa10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms