RNA–Protein interactions for RNA: ENST00000398145.6

HPS4-202, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HPS4, Length 4,497 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-202ENST00000398145 NOTCH1P46531 2555 aa7.07□□□□□ -1.28
HPS4-202ENST00000398145 KRTAP1-1Q07627 177 aa7.07□□□□□ -1.28
HPS4-202ENST00000398145 RTL8CO15255 209 aa7.05□□□□□ -1.28
HPS4-202ENST00000398145 C9orf163Q8N9P6 203 aa7.05□□□□□ -1.28
HPS4-202ENST00000398145 UQCR11O14957 56 aa7.05□□□□□ -1.28
HPS4-202ENST00000398145 WDFY3Q8IZQ1 3526 aa7.05□□□□□ -1.28
HPS4-202ENST00000398145 LRBAP50851 2863 aa7.04□□□□□ -1.28
HPS4-202ENST00000398145 CFAP47Q6ZTR5 3102 aa7.04□□□□□ -1.28
HPS4-202ENST00000398145 IGLV8-61A0A075B6I0 122 aa7.04□□□□□ -1.28
HPS4-202ENST00000398145 ITPR1Q14643 2758 aa7.03□□□□□ -1.28
HPS4-202ENST00000398145 CDC42SE1Q9NRR8 79 aa7.03□□□□□ -1.28
HPS4-202ENST00000398145 DMXL2Q8TDJ6 3036 aa7.02□□□□□ -1.29
HPS4-202ENST00000398145 CNBPP62633 177 aaKnown RBP7.02□□□□□ -1.29
HPS4-202ENST00000398145 UBR5O95071 2799 aaPredicted RBP7.02□□□□□ -1.29
HPS4-202ENST00000398145 SETXQ7Z333 2677 aaKnown RBP7.02□□□□□ -1.29
HPS4-202ENST00000398145 FLNCQ14315 2725 aa7.01□□□□□ -1.29
HPS4-202ENST00000398145 SPRR1AP35321 89 aa7□□□□□ -1.29
HPS4-202ENST00000398145 ZNF861PO60384 105 aa7□□□□□ -1.29
HPS4-202ENST00000398145 NBEAL1Q6ZS30 2694 aa6.99□□□□□ -1.29
HPS4-202ENST00000398145 COL6A5A8TX70 2615 aa6.99□□□□□ -1.29
HPS4-202ENST00000398145 IGLV7-46A0A075B6I9 117 aa6.98□□□□□ -1.29
HPS4-202ENST00000398145 LCA10Q71F78 164 aa6.98□□□□□ -1.29
HPS4-202ENST00000398145 ASH1LQ9NR48 2969 aaKnown RBP6.98□□□□□ -1.29
HPS4-202ENST00000398145 COL12A1Q99715 3063 aa6.98□□□□□ -1.29
HPS4-202ENST00000398145 MIR22HGQ0VDD5 57 aa6.98□□□□□ -1.29
HPS4-202ENST00000398145 Q8N9P0 234 aaPredicted RBP6.98□□□□□ -1.29
HPS4-202ENST00000398145 K7EIL1 84 aa6.97□□□□□ -1.29
HPS4-202ENST00000398145 SSBP3-AS1Q7Z2R9 100 aa6.97□□□□□ -1.29
HPS4-202ENST00000398145 IGSF10Q6WRI0 2623 aa6.97□□□□□ -1.29
HPS4-202ENST00000398145 PRR26Q8N8Z3 221 aa6.96□□□□□ -1.3
HPS4-202ENST00000398145 ANAPC11Q9NYG5 84 aa6.96□□□□□ -1.3
HPS4-202ENST00000398145 TNRC18O15417 2968 aaPredicted RBP6.95□□□□□ -1.3
HPS4-202ENST00000398145 TEP1Q99973 2627 aaKnown RBP6.95□□□□□ -1.3
HPS4-202ENST00000398145 Q75L30 129 aa6.94□□□□□ -1.3
HPS4-202ENST00000398145 Q96NJ1 140 aa6.94□□□□□ -1.3
HPS4-202ENST00000398145 TYMSOSQ8TAI1 123 aa6.93□□□□□ -1.3
HPS4-202ENST00000398145 ASPMQ8IZT6 3477 aa6.93□□□□□ -1.3
HPS4-202ENST00000398145 PSORS1C2Q9UIG4 136 aa6.93□□□□□ -1.3
HPS4-202ENST00000398145 ZZEF1O43149 2961 aa6.92□□□□□ -1.3
HPS4-202ENST00000398145 STAB1Q9NY15 2570 aa6.91□□□□□ -1.3
HPS4-202ENST00000398145 Q5VV11 94 aa6.91□□□□□ -1.3
HPS4-202ENST00000398145 KRTAP26-1Q6PEX3 210 aa6.91□□□□□ -1.3
HPS4-202ENST00000398145 A0A087WTM6 91 aa6.91□□□□□ -1.3
HPS4-202ENST00000398145 MMP24-AS1A0A0U1RRL7 71 aa6.91□□□□□ -1.3
HPS4-202ENST00000398145 TNP2Q05952 138 aa6.89□□□□□ -1.31
HPS4-202ENST00000398145 LINC01558Q9Y6Z2 57 aa6.89□□□□□ -1.31
HPS4-202ENST00000398145 LINC00472Q9H8W2 130 aa6.88□□□□□ -1.31
HPS4-202ENST00000398145 RBM12B-AS1Q9P1G2 102 aa6.88□□□□□ -1.31
HPS4-202ENST00000398145 LOC400499M0QZD8 3231 aa6.88□□□□□ -1.31
HPS4-202ENST00000398145 PLA2G1BP04054 148 aaKnown RBP6.87□□□□□ -1.31
HPS4-202ENST00000398145 IGLV7-43P04211 117 aa6.86□□□□□ -1.31
HPS4-202ENST00000398145 BAHCC1Q9P281 2608 aa6.86□□□□□ -1.31
HPS4-202ENST00000398145 APLNQ9ULZ1 77 aa6.86□□□□□ -1.31
HPS4-202ENST00000398145 SPRR1BP22528 89 aa6.86□□□□□ -1.31
HPS4-202ENST00000398145 ZANQ9Y493 2812 aa6.84□□□□□ -1.31
HPS4-202ENST00000398145 KRTAP4-16G5E9R7 235 aaPredicted RBP6.83□□□□□ -1.32
HPS4-202ENST00000398145 ZCCHC13Q8WW36 166 aaKnown RBP6.82□□□□□ -1.32
HPS4-202ENST00000398145 HRES1P13985 223 aa6.81□□□□□ -1.32
HPS4-202ENST00000398145 NSD1Q96L73 2696 aaPredicted RBP6.8□□□□□ -1.32
HPS4-202ENST00000398145 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.79□□□□□ -1.32
HPS4-202ENST00000398145 UTP20O75691 2785 aaKnown RBP6.79□□□□□ -1.32
HPS4-202ENST00000398145 DMXL1Q9Y485 3027 aa6.77□□□□□ -1.33
HPS4-202ENST00000398145 KRTAP29-1A8MX34 341 aaPredicted RBP6.77□□□□□ -1.33
HPS4-202ENST00000398145 SPINK7P58062 85 aa6.77□□□□□ -1.33
HPS4-202ENST00000398145 STAB2Q8WWQ8 2551 aa6.77□□□□□ -1.33
HPS4-202ENST00000398145 CELSR2Q9HCU4 2923 aa6.76□□□□□ -1.33
HPS4-202ENST00000398145 SPINT4Q6UDR6 99 aa6.76□□□□□ -1.33
HPS4-202ENST00000398145 Q8N1X5 172 aa6.76□□□□□ -1.33
HPS4-202ENST00000398145 APCP25054 2843 aa6.76□□□□□ -1.33
HPS4-202ENST00000398145 LINC00304Q8N9R0 145 aa6.75□□□□□ -1.33
HPS4-202ENST00000398145 LAMA5O15230 3695 aa6.74□□□□□ -1.33
HPS4-202ENST00000398145 HRNRQ86YZ3 2850 aaPredicted RBP6.73□□□□□ -1.33
HPS4-202ENST00000398145 LCE6AA0A183 80 aa6.73□□□□□ -1.33
HPS4-202ENST00000398145 NIPBLQ6KC79 2804 aaeCLIP6.73□□□□□ -1.33
HPS4-202ENST00000398145 LINC01554Q52M75 96 aa6.72□□□□□ -1.33
HPS4-202ENST00000398145 ZFHX4Q86UP3 3567 aa6.72□□□□□ -1.33
HPS4-202ENST00000398145 PRAC1Q96KF2 57 aa6.72□□□□□ -1.33
HPS4-202ENST00000398145 KRTAP1-5Q9BYS1 174 aa6.72□□□□□ -1.33
HPS4-202ENST00000398145 ITPR2Q14571 2701 aa6.71□□□□□ -1.34
HPS4-202ENST00000398145 NF1P21359 2839 aa6.71□□□□□ -1.34
HPS4-202ENST00000398145 DCHS1Q96JQ0 3298 aa6.7□□□□□ -1.34
HPS4-202ENST00000398145 C9orf92A6NGG3 77 aa6.7□□□□□ -1.34
HPS4-202ENST00000398145 HIVEP1P15822 2718 aa6.69□□□□□ -1.34
HPS4-202ENST00000398145 Q5W150 140 aa6.68□□□□□ -1.34
HPS4-202ENST00000398145 Q6ZR54 194 aa6.68□□□□□ -1.34
HPS4-202ENST00000398145 FBN2P35556 2912 aa6.68□□□□□ -1.34
HPS4-202ENST00000398145 WWC2-AS2Q96NR7 200 aa6.68□□□□□ -1.34
HPS4-202ENST00000398145 PLAC8Q9NZF1 115 aa6.67□□□□□ -1.34
HPS4-202ENST00000398145 CRIPTQ9P021 101 aa6.66□□□□□ -1.34
HPS4-202ENST00000398145 DCHS2Q6V1P9 2916 aa6.64□□□□□ -1.35
HPS4-202ENST00000398145 A0A1B0GU33 70 aa6.64□□□□□ -1.35
HPS4-202ENST00000398145 DMAC1Q96GE9 116 aa6.62□□□□□ -1.35
HPS4-202ENST00000398145 DMBT1Q9UGM3 2413 aaPredicted RBP6.61□□□□□ -1.35
HPS4-202ENST00000398145 KRTAP7-1Q8IUC3 87 aa6.61□□□□□ -1.35
HPS4-202ENST00000398145 LINC00483Q53H64 154 aa6.6□□□□□ -1.35
HPS4-202ENST00000398145 CSAG1Q6PB30 78 aa6.59□□□□□ -1.35
HPS4-202ENST00000398145 SMR3BP02814 79 aaPredicted RBP6.59□□□□□ -1.35
HPS4-202ENST00000398145 A0A0D9SG42 100 aa6.58□□□□□ -1.36
HPS4-202ENST00000398145 PANO1I0J062 215 aa6.57□□□□□ -1.36
HPS4-202ENST00000398145 MXRA5Q9NR99 2828 aa6.56□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 100.5 ms