RNA–Protein interactions for RNA: ENST00000397906.6

TTC28-201, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TTC28, Length 11,795 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-201ENST00000397906 MGAQ8IWI9 3026 aa6.91□□□□□ -1.3
TTC28-201ENST00000397906 CSAG1Q6PB30 78 aa6.9□□□□□ -1.3
TTC28-201ENST00000397906 CHD9Q3L8U1 2897 aa6.89□□□□□ -1.31
TTC28-201ENST00000397906 A0A1B0GU33 70 aa6.89□□□□□ -1.31
TTC28-201ENST00000397906 CELSR3Q9NYQ7 3312 aa6.89□□□□□ -1.31
TTC28-201ENST00000397906 Q8N9P0 234 aaPredicted RBP6.89□□□□□ -1.31
TTC28-201ENST00000397906 SEC61BP60468 96 aaKnown RBP6.89□□□□□ -1.31
TTC28-201ENST00000397906 DNAH14Q0VDD8 3507 aa6.87□□□□□ -1.31
TTC28-201ENST00000397906 WDFY4Q6ZS81 3184 aa6.87□□□□□ -1.31
TTC28-201ENST00000397906 OCR1Q9BZK8 76 aa6.87□□□□□ -1.31
TTC28-201ENST00000397906 SPINK7P58062 85 aa6.86□□□□□ -1.31
TTC28-201ENST00000397906 TRIOO75962 3097 aa6.86□□□□□ -1.31
TTC28-201ENST00000397906 LINC00483Q53H64 154 aa6.86□□□□□ -1.31
TTC28-201ENST00000397906 MMP24-AS1A0A0U1RRL7 71 aa6.85□□□□□ -1.31
TTC28-201ENST00000397906 R4GN34 69 aa6.85□□□□□ -1.31
TTC28-201ENST00000397906 SZT2Q5T011 3432 aa6.85□□□□□ -1.31
TTC28-201ENST00000397906 CENPEQ02224 2701 aa6.83□□□□□ -1.32
TTC28-201ENST00000397906 Q5W150 140 aa6.82□□□□□ -1.32
TTC28-201ENST00000397906 LUZP6Q538Z0 58 aa6.82□□□□□ -1.32
TTC28-201ENST00000397906 A0A0C4DFX4 3053 aa6.81□□□□□ -1.32
TTC28-201ENST00000397906 Q1T7F1 81 aa6.81□□□□□ -1.32
TTC28-201ENST00000397906 PANO1I0J062 215 aa6.8□□□□□ -1.32
TTC28-201ENST00000397906 SPRR1AP35321 89 aa6.8□□□□□ -1.32
TTC28-201ENST00000397906 KTN1-AS1Q86SY8 53 aa6.79□□□□□ -1.32
TTC28-201ENST00000397906 TEX15Q9BXT5 2789 aa6.79□□□□□ -1.32
TTC28-201ENST00000397906 TEP1Q99973 2627 aaKnown RBP6.78□□□□□ -1.32
TTC28-201ENST00000397906 AKAP13Q12802 2813 aa6.76□□□□□ -1.33
TTC28-201ENST00000397906 VCANP13611 3396 aa6.76□□□□□ -1.33
TTC28-201ENST00000397906 LINC00472Q9H8W2 130 aa6.75□□□□□ -1.33
TTC28-201ENST00000397906 TRANK1O15050 2925 aa6.74□□□□□ -1.33
TTC28-201ENST00000397906 KRTAP26-1Q6PEX3 210 aa6.74□□□□□ -1.33
TTC28-201ENST00000397906 M0QZ58 72 aa6.73□□□□□ -1.33
TTC28-201ENST00000397906 DMAC1Q96GE9 116 aa6.72□□□□□ -1.33
TTC28-201ENST00000397906 LCA10Q71F78 164 aa6.72□□□□□ -1.33
TTC28-201ENST00000397906 A0A087X002 238 aa6.71□□□□□ -1.34
TTC28-201ENST00000397906 OXTP01178 125 aa6.71□□□□□ -1.34
TTC28-201ENST00000397906 SPRR1BP22528 89 aa6.7□□□□□ -1.34
TTC28-201ENST00000397906 BAHCC1Q9P281 2608 aa6.7□□□□□ -1.34
TTC28-201ENST00000397906 CHD6Q8TD26 2715 aa6.7□□□□□ -1.34
TTC28-201ENST00000397906 Q6ZR54 194 aa6.69□□□□□ -1.34
TTC28-201ENST00000397906 VPS13AQ96RL7 3174 aa6.69□□□□□ -1.34
TTC28-201ENST00000397906 COL6A3P12111 3177 aa6.67□□□□□ -1.34
TTC28-201ENST00000397906 ADM2Q7Z4H4 148 aa6.66□□□□□ -1.34
TTC28-201ENST00000397906 STAB1Q9NY15 2570 aa6.66□□□□□ -1.34
TTC28-201ENST00000397906 SETXQ7Z333 2677 aaKnown RBP6.65□□□□□ -1.34
TTC28-201ENST00000397906 PLAC4Q8WY50 150 aa6.65□□□□□ -1.34
TTC28-201ENST00000397906 Q75L30 129 aa6.65□□□□□ -1.35
TTC28-201ENST00000397906 FP248Q71RG6 208 aaPredicted RBP6.64□□□□□ -1.35
TTC28-201ENST00000397906 DSPP15924 2871 aaKnown RBP6.63□□□□□ -1.35
TTC28-201ENST00000397906 ZNF292O60281 2723 aa6.62□□□□□ -1.35
TTC28-201ENST00000397906 FREM2Q5SZK8 3169 aa6.61□□□□□ -1.35
TTC28-201ENST00000397906 NBEAL1Q6ZS30 2694 aa6.61□□□□□ -1.35
TTC28-201ENST00000397906 GCN1Q92616 2671 aaKnown RBP6.6□□□□□ -1.35
TTC28-201ENST00000397906 COL6A5A8TX70 2615 aa6.6□□□□□ -1.35
TTC28-201ENST00000397906 FRYQ5TBA9 3013 aa6.59□□□□□ -1.35
TTC28-201ENST00000397906 LINC01558Q9Y6Z2 57 aa6.59□□□□□ -1.35
TTC28-201ENST00000397906 PRAC1Q96KF2 57 aa6.59□□□□□ -1.35
TTC28-201ENST00000397906 CYSTM1Q9H1C7 97 aa6.59□□□□□ -1.36
TTC28-201ENST00000397906 SPATA8Q6RVD6 105 aa6.58□□□□□ -1.36
TTC28-201ENST00000397906 IGSF10Q6WRI0 2623 aa6.57□□□□□ -1.36
TTC28-201ENST00000397906 SPTBN5Q9NRC6 3674 aaKnown RBP6.56□□□□□ -1.36
TTC28-201ENST00000397906 KRTAP11-1Q8IUC1 163 aa6.56□□□□□ -1.36
TTC28-201ENST00000397906 UNC79Q9P2D8 2635 aa6.55□□□□□ -1.36
TTC28-201ENST00000397906 KRTAP4-16G5E9R7 235 aaPredicted RBP6.54□□□□□ -1.36
TTC28-201ENST00000397906 RPL37P61927 97 aaKnown RBP6.54□□□□□ -1.36
TTC28-201ENST00000397906 USP34Q70CQ2 3546 aa6.54□□□□□ -1.36
TTC28-201ENST00000397906 NOTCH2NLQ7Z3S9 236 aa6.54□□□□□ -1.36
TTC28-201ENST00000397906 H1FX-AS1Q4G0G2 97 aa6.53□□□□□ -1.36
TTC28-201ENST00000397906 Q6ZRN7 208 aaPredicted RBP6.53□□□□□ -1.36
TTC28-201ENST00000397906 LAMA1P25391 3075 aa6.53□□□□□ -1.36
TTC28-201ENST00000397906 Q5VV11 94 aa6.52□□□□□ -1.36
TTC28-201ENST00000397906 FLG2Q5D862 2391 aaPredicted RBP6.5□□□□□ -1.37
TTC28-201ENST00000397906 ITPR2Q14571 2701 aa6.5□□□□□ -1.37
TTC28-201ENST00000397906 MAP1AP78559 2803 aaPredicted RBP6.49□□□□□ -1.37
TTC28-201ENST00000397906 ROMO1P60602 79 aa6.49□□□□□ -1.37
TTC28-201ENST00000397906 NOTCH1P46531 2555 aa6.48□□□□□ -1.37
TTC28-201ENST00000397906 CFAP47Q6ZTR5 3102 aa6.48□□□□□ -1.37
TTC28-201ENST00000397906 NBEAL2Q6ZNJ1 2754 aa6.48□□□□□ -1.37
TTC28-201ENST00000397906 SPEGQ15772 3267 aa6.47□□□□□ -1.37
TTC28-201ENST00000397906 CRYBG3Q68DQ2 2970 aa6.46□□□□□ -1.37
TTC28-201ENST00000397906 C20orf166-AS1Q96NR2 134 aa6.46□□□□□ -1.38
TTC28-201ENST00000397906 BOD1L1Q8NFC6 3051 aa6.45□□□□□ -1.38
TTC28-201ENST00000397906 MYO15AQ9UKN7 3530 aa6.44□□□□□ -1.38
TTC28-201ENST00000397906 Q5XG85 94 aa6.44□□□□□ -1.38
TTC28-201ENST00000397906 KRTAP13-2Q52LG2 175 aa6.44□□□□□ -1.38
TTC28-201ENST00000397906 REV3LO60673 3130 aa6.43□□□□□ -1.38
TTC28-201ENST00000397906 EYSQ5T1H1 3165 aa6.43□□□□□ -1.38
TTC28-201ENST00000397906 A8MUU9 505 aa6.43□□□□□ -1.38
TTC28-201ENST00000397906 FRYLO94915 3013 aa6.4□□□□□ -1.38
TTC28-201ENST00000397906 KRTAP7-1Q8IUC3 87 aa6.4□□□□□ -1.39
TTC28-201ENST00000397906 LRBAP50851 2863 aa6.4□□□□□ -1.39
TTC28-201ENST00000397906 RPS29P62273 56 aaKnown RBP6.39□□□□□ -1.39
TTC28-201ENST00000397906 KALRNO60229 2985 aa6.39□□□□□ -1.39
TTC28-201ENST00000397906 KRTAP29-1A8MX34 341 aaPredicted RBP6.39□□□□□ -1.39
TTC28-201ENST00000397906 ATMQ13315 3056 aa6.38□□□□□ -1.39
TTC28-201ENST00000397906 COL12A1Q99715 3063 aa6.38□□□□□ -1.39
TTC28-201ENST00000397906 KRTAP21-3Q3LHN1 58 aa6.37□□□□□ -1.39
TTC28-201ENST00000397906 UBR5O95071 2799 aaPredicted RBP6.37□□□□□ -1.39
TTC28-201ENST00000397906 DMBT1Q9UGM3 2413 aaPredicted RBP6.36□□□□□ -1.39
TTC28-201ENST00000397906 A0A0A0MQY5 61 aa6.34□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms