RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 PSMB2P49721 201 aa4.09□□□□□ -1.75
LIMA1-202ENST00000394943 Q8N377 158 aa4.09□□□□□ -1.75
LIMA1-202ENST00000394943 HMCN2Q8NDA2 5059 aa4.09□□□□□ -1.76
LIMA1-202ENST00000394943 K7ERU9 68 aa4.09□□□□□ -1.76
LIMA1-202ENST00000394943 FAM218AQ96MZ4 157 aa4.09□□□□□ -1.76
LIMA1-202ENST00000394943 TEX49A0A1B0GTD5 131 aa4.08□□□□□ -1.76
LIMA1-202ENST00000394943 A0A1B0GV72 72 aa4.08□□□□□ -1.76
LIMA1-202ENST00000394943 LST1O00453 97 aa4.08□□□□□ -1.76
LIMA1-202ENST00000394943 ASB16-AS1Q495Z4 193 aa4.08□□□□□ -1.76
LIMA1-202ENST00000394943 hADV29S1A0JD25 119 aa4.08□□□□□ -1.76
LIMA1-202ENST00000394943 K7ERJ3 54 aa4.08□□□□□ -1.76
LIMA1-202ENST00000394943 CRYGAP11844 174 aa4.08□□□□□ -1.76
LIMA1-202ENST00000394943 SPCS1Q9Y6A9 102 aa4.08□□□□□ -1.76
LIMA1-202ENST00000394943 LCE2AQ5TA79 106 aaPredicted RBP4.08□□□□□ -1.76
LIMA1-202ENST00000394943 SPAG11AQ6PDA7 123 aa4.08□□□□□ -1.76
LIMA1-202ENST00000394943 TAX1BP3O14907 124 aa4.07□□□□□ -1.76
LIMA1-202ENST00000394943 FABP2P12104 132 aa4.07□□□□□ -1.76
LIMA1-202ENST00000394943 OR13C6PQ8NH95 151 aa4.07□□□□□ -1.76
LIMA1-202ENST00000394943 OBSCN-AS1Q96MR7 158 aa4.07□□□□□ -1.76
LIMA1-202ENST00000394943 Q8NBF4 154 aa4.06□□□□□ -1.76
LIMA1-202ENST00000394943 C9orf118A6NHY6 69 aa4.06□□□□□ -1.76
LIMA1-202ENST00000394943 UBE2V1Q13404 147 aa4.06□□□□□ -1.76
LIMA1-202ENST00000394943 ST20-AS1Q8NBB2 130 aa4.06□□□□□ -1.76
LIMA1-202ENST00000394943 GHRHP01286 108 aa4.05□□□□□ -1.76
LIMA1-202ENST00000394943 ETDBQ3ZM63 59 aa4.05□□□□□ -1.76
LIMA1-202ENST00000394943 PRR26Q8N8Z3 221 aa4.05□□□□□ -1.76
LIMA1-202ENST00000394943 TRBV20-1A0A075B6N2 111 aa4.04□□□□□ -1.76
LIMA1-202ENST00000394943 LOC100996750A0A140TA64 210 aa4.04□□□□□ -1.76
LIMA1-202ENST00000394943 KRTAP4-6Q9BYQ5 205 aa4.04□□□□□ -1.76
LIMA1-202ENST00000394943 C3orf22Q8N5N4 141 aa4.04□□□□□ -1.76
LIMA1-202ENST00000394943 HIGD2AQ9BW72 106 aa4.03□□□□□ -1.76
LIMA1-202ENST00000394943 J3QR89 54 aa4.03□□□□□ -1.76
LIMA1-202ENST00000394943 SPINK1P00995 79 aa4.03□□□□□ -1.76
LIMA1-202ENST00000394943 Q6JHZ5 121 aa4.03□□□□□ -1.76
LIMA1-202ENST00000394943 CLEC2BQ92478 149 aa4.03□□□□□ -1.76
LIMA1-202ENST00000394943 H3BMG7 143 aa4.03□□□□□ -1.76
LIMA1-202ENST00000394943 SLC25A20O43772 301 aa4.03□□□□□ -1.76
LIMA1-202ENST00000394943 A0A1B0GW54 56 aa4.02□□□□□ -1.77
LIMA1-202ENST00000394943 COX6CP09669 75 aa4.02□□□□□ -1.77
LIMA1-202ENST00000394943 LAMTOR3Q9UHA4 124 aa4.02□□□□□ -1.77
LIMA1-202ENST00000394943 A0A1W2PPM0 123 aa4.02□□□□□ -1.77
LIMA1-202ENST00000394943 TYMSOSQ8TAI1 123 aa4.02□□□□□ -1.77
LIMA1-202ENST00000394943 LYRM7Q5U5X0 104 aa4.01□□□□□ -1.77
LIMA1-202ENST00000394943 Q6ZQY7 126 aa4.01□□□□□ -1.77
LIMA1-202ENST00000394943 FP248Q71RG6 208 aaPredicted RBP4.01□□□□□ -1.77
LIMA1-202ENST00000394943 TRBV7-4A0A0J9YYF1 115 aa4.01□□□□□ -1.77
LIMA1-202ENST00000394943 TMEM256-PLSCR3K7ERE1 68 aa4.01□□□□□ -1.77
LIMA1-202ENST00000394943 TCL1BO95988 128 aa4.01□□□□□ -1.77
LIMA1-202ENST00000394943 ATXN8Q156A1 80 aa4□□□□□ -1.77
LIMA1-202ENST00000394943 LINC00304Q8N9R0 145 aa4□□□□□ -1.77
LIMA1-202ENST00000394943 HERC1Q15751 4861 aa4□□□□□ -1.77
LIMA1-202ENST00000394943 SNCGO76070 127 aa4□□□□□ -1.77
LIMA1-202ENST00000394943 LOC110117498A0A087WWA1 95 aa3.99□□□□□ -1.77
LIMA1-202ENST00000394943 GAGE2AQ6NT46 116 aa3.99□□□□□ -1.77
LIMA1-202ENST00000394943 ANAPC11Q9NYG5 84 aa3.99□□□□□ -1.77
LIMA1-202ENST00000394943 PRO0461Q9UI25 63 aa3.99□□□□□ -1.77
LIMA1-202ENST00000394943 LORP23490 312 aaPredicted RBP3.99□□□□□ -1.77
LIMA1-202ENST00000394943 ORMDL1Q9P0S3 153 aa3.99□□□□□ -1.77
LIMA1-202ENST00000394943 H3BT86 120 aa3.99□□□□□ -1.77
LIMA1-202ENST00000394943 NDUFV3P56181 108 aaKnown RBP3.98□□□□□ -1.77
LIMA1-202ENST00000394943 IGFL1Q6UW32 110 aa3.98□□□□□ -1.77
LIMA1-202ENST00000394943 FLG2Q5D862 2391 aaPredicted RBP3.98□□□□□ -1.77
LIMA1-202ENST00000394943 TRBV7-7A0A0K0K1E9 115 aa3.97□□□□□ -1.77
LIMA1-202ENST00000394943 MOBPQ13875 183 aa3.97□□□□□ -1.77
LIMA1-202ENST00000394943 TPRXLQ17RH7 258 aa3.97□□□□□ -1.77
LIMA1-202ENST00000394943 K7EP34 96 aa3.96□□□□□ -1.78
LIMA1-202ENST00000394943 SIGMAR1Q99720 223 aa3.96□□□□□ -1.78
LIMA1-202ENST00000394943 TEN1Q86WV5 123 aa3.95□□□□□ -1.78
LIMA1-202ENST00000394943 LIMD2Q9BT23 127 aa3.95□□□□□ -1.78
LIMA1-202ENST00000394943 Q96NJ1 140 aa3.95□□□□□ -1.78
LIMA1-202ENST00000394943 C9JAW5 83 aa3.94□□□□□ -1.78
LIMA1-202ENST00000394943 JMJD7-PLA2G4BH0Y9G9 81 aa3.94□□□□□ -1.78
LIMA1-202ENST00000394943 PDE6GP18545 87 aa3.94□□□□□ -1.78
LIMA1-202ENST00000394943 A0A1W2PNM2 257 aa3.94□□□□□ -1.78
LIMA1-202ENST00000394943 Q6ZQT0 140 aa3.93□□□□□ -1.78
LIMA1-202ENST00000394943 BAALC-AS2P0C853 105 aa3.93□□□□□ -1.78
LIMA1-202ENST00000394943 KRTAP13-3Q3SY46 172 aa3.93□□□□□ -1.78
LIMA1-202ENST00000394943 DNAL4O96015 105 aa3.92□□□□□ -1.78
LIMA1-202ENST00000394943 IGLV9-49A0A0B4J1Y8 123 aa3.92□□□□□ -1.78
LIMA1-202ENST00000394943 F8WEM9 126 aa3.91□□□□□ -1.78
LIMA1-202ENST00000394943 C1orf195Q5TG92 126 aa3.91□□□□□ -1.78
LIMA1-202ENST00000394943 ANKRD29Q8N6D5 301 aa3.91□□□□□ -1.78
LIMA1-202ENST00000394943 DEFB105AQ8NG35 78 aa3.91□□□□□ -1.78
LIMA1-202ENST00000394943 ANAPC13Q9BS18 74 aa3.91□□□□□ -1.78
LIMA1-202ENST00000394943 F8W1H4 67 aa3.9□□□□□ -1.78
LIMA1-202ENST00000394943 XP32Q5T750 250 aa3.9□□□□□ -1.78
LIMA1-202ENST00000394943 C9orf153Q5TBE3 101 aa3.9□□□□□ -1.78
LIMA1-202ENST00000394943 LINC00472Q9H8W2 130 aa3.9□□□□□ -1.79
LIMA1-202ENST00000394943 RBM3P98179 157 aaKnown RBP3.89□□□□□ -1.79
LIMA1-202ENST00000394943 SS18L2Q9UHA2 77 aa3.89□□□□□ -1.79
LIMA1-202ENST00000394943 SCGB1A1P11684 91 aa3.88□□□□□ -1.79
LIMA1-202ENST00000394943 LPAP08519 4548 aa3.88□□□□□ -1.79
LIMA1-202ENST00000394943 CCKP06307 115 aa3.88□□□□□ -1.79
LIMA1-202ENST00000394943 DMBT1Q9UGM3 2413 aaPredicted RBP3.86□□□□□ -1.79
LIMA1-202ENST00000394943 MT-ATP8P03928 68 aa3.86□□□□□ -1.79
LIMA1-202ENST00000394943 DSCR8Q96T75 97 aa3.85□□□□□ -1.79
LIMA1-202ENST00000394943 HIST1H4AP62805 103 aaKnown RBP3.85□□□□□ -1.79
LIMA1-202ENST00000394943 KRTAP16-1A8MUX0 517 aa3.84□□□□□ -1.79
LIMA1-202ENST00000394943 J3KT08 172 aa3.84□□□□□ -1.79
LIMA1-202ENST00000394943 IGLV7-46A0A075B6I9 117 aa3.84□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 124.6 ms