RNA–Protein interactions for RNA: ENST00000394299.6

GPC3-202, Transcript of glypican 3, humanhuman

TSL 1 (best) BASIC

Gene GPC3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC3-202ENST00000394299 RTL8CO15255 209 aa9.35□□□□□ -0.91
GPC3-202ENST00000394299 SPACA4Q8TDM5 124 aa9.35□□□□□ -0.91
GPC3-202ENST00000394299 FRAS1Q86XX4 4008 aa9.35□□□□□ -0.91
GPC3-202ENST00000394299 LINC00474Q9P2X8 69 aa9.34□□□□□ -0.91
GPC3-202ENST00000394299 C1orf134Q5TEV5 83 aa9.34□□□□□ -0.91
GPC3-202ENST00000394299 Q8N9L7 120 aa9.34□□□□□ -0.91
GPC3-202ENST00000394299 DNAH6Q9C0G6 4158 aa9.33□□□□□ -0.92
GPC3-202ENST00000394299 OXTP01178 125 aa9.32□□□□□ -0.92
GPC3-202ENST00000394299 UBE2AP49459 152 aa9.32□□□□□ -0.92
GPC3-202ENST00000394299 NREPQ16612 68 aa9.32□□□□□ -0.92
GPC3-202ENST00000394299 LINC00476Q8WZB0 136 aa9.32□□□□□ -0.92
GPC3-202ENST00000394299 CXCL6P80162 114 aa9.3□□□□□ -0.92
GPC3-202ENST00000394299 Q8NBF4 154 aa9.29□□□□□ -0.92
GPC3-202ENST00000394299 DNAH5Q8TE73 4624 aa9.29□□□□□ -0.92
GPC3-202ENST00000394299 DNAH11Q96DT5 4516 aa9.29□□□□□ -0.92
GPC3-202ENST00000394299 IGFL1Q6UW32 110 aa9.29□□□□□ -0.92
GPC3-202ENST00000394299 SERP2Q8N6R1 65 aa9.29□□□□□ -0.92
GPC3-202ENST00000394299 IGLV5-52A0A0A0MRZ9 124 aa9.28□□□□□ -0.92
GPC3-202ENST00000394299 BCE1O60756 84 aa9.28□□□□□ -0.92
GPC3-202ENST00000394299 PKIGQ9Y2B9 76 aa9.28□□□□□ -0.92
GPC3-202ENST00000394299 F8WEM9 126 aa9.27□□□□□ -0.93
GPC3-202ENST00000394299 TMEM258P61165 79 aa9.27□□□□□ -0.93
GPC3-202ENST00000394299 C4orf26Q17RF5 130 aa9.27□□□□□ -0.93
GPC3-202ENST00000394299 H0Y9J4 135 aa9.26□□□□□ -0.93
GPC3-202ENST00000394299 BPY2O14599 106 aa9.26□□□□□ -0.93
GPC3-202ENST00000394299 KRTAP13-1Q8IUC0 172 aa9.26□□□□□ -0.93
GPC3-202ENST00000394299 WWC2-AS2Q96NR7 200 aa9.26□□□□□ -0.93
GPC3-202ENST00000394299 SPRR4Q96PI1 79 aa9.25□□□□□ -0.93
GPC3-202ENST00000394299 KRTAP21-3Q3LHN1 58 aa9.23□□□□□ -0.93
GPC3-202ENST00000394299 KRTAP10-2P60368 255 aa9.23□□□□□ -0.93
GPC3-202ENST00000394299 Q5XG85 94 aa9.23□□□□□ -0.93
GPC3-202ENST00000394299 PSORS1C2Q9UIG4 136 aa9.22□□□□□ -0.93
GPC3-202ENST00000394299 IGKV4-1P06312 121 aa9.22□□□□□ -0.93
GPC3-202ENST00000394299 DEFB116Q30KQ4 102 aa9.22□□□□□ -0.93
GPC3-202ENST00000394299 FAT2Q9NYQ8 4349 aa9.2□□□□□ -0.94
GPC3-202ENST00000394299 HRCT1Q6UXD1 115 aa9.2□□□□□ -0.94
GPC3-202ENST00000394299 PLAC8Q9NZF1 115 aa9.2□□□□□ -0.94
GPC3-202ENST00000394299 IGLV8-61A0A075B6I0 122 aa9.2□□□□□ -0.94
GPC3-202ENST00000394299 SPRR1BP22528 89 aa9.2□□□□□ -0.94
GPC3-202ENST00000394299 FAM30AQ9NZY2 134 aa9.2□□□□□ -0.94
GPC3-202ENST00000394299 ALMS1Q8TCU4 4167 aa9.19□□□□□ -0.94
GPC3-202ENST00000394299 A0A087WSZ3 146 aa9.19□□□□□ -0.94
GPC3-202ENST00000394299 ANAPC11Q9NYG5 84 aa9.18□□□□□ -0.94
GPC3-202ENST00000394299 PKD1P98161 4303 aa9.18□□□□□ -0.94
GPC3-202ENST00000394299 A0A1B0GW54 56 aa9.16□□□□□ -0.94
GPC3-202ENST00000394299 DSCR10P59022 87 aa9.16□□□□□ -0.94
GPC3-202ENST00000394299 IGLV9-49A0A0B4J1Y8 123 aa9.15□□□□□ -0.94
GPC3-202ENST00000394299 LRP1BQ9NZR2 4599 aa9.13□□□□□ -0.95
GPC3-202ENST00000394299 K7EQZ3 153 aa9.13□□□□□ -0.95
GPC3-202ENST00000394299 SACSQ9NZJ4 4579 aa9.12□□□□□ -0.95
GPC3-202ENST00000394299 CIRBP-AS1Q8TBR5 109 aa9.12□□□□□ -0.95
GPC3-202ENST00000394299 C20orf197Q8N268 126 aa9.11□□□□□ -0.95
GPC3-202ENST00000394299 RPL37AP61513 92 aaKnown RBP9.1□□□□□ -0.95
GPC3-202ENST00000394299 TRAV7A0A075B6U4 112 aa9.1□□□□□ -0.95
GPC3-202ENST00000394299 ZNF861PO60384 105 aa9.1□□□□□ -0.95
GPC3-202ENST00000394299 KRTAP10-1P60331 282 aa9.09□□□□□ -0.95
GPC3-202ENST00000394299 LINC00483Q53H64 154 aa9.06□□□□□ -0.96
GPC3-202ENST00000394299 SNURFQ9Y675 71 aa9.06□□□□□ -0.96
GPC3-202ENST00000394299 FAM236DA0A1B0GTK5 79 aa9.05□□□□□ -0.96
GPC3-202ENST00000394299 H7BZZ5 65 aa9.05□□□□□ -0.96
GPC3-202ENST00000394299 IGLV7-43P04211 117 aa9.05□□□□□ -0.96
GPC3-202ENST00000394299 FAM236CP0DP71 79 aa9.05□□□□□ -0.96
GPC3-202ENST00000394299 MOBPQ13875 183 aa9.04□□□□□ -0.96
GPC3-202ENST00000394299 PKHD1P08F94 4074 aa9.03□□□□□ -0.96
GPC3-202ENST00000394299 LINC00336Q6ZUF6 198 aa9.02□□□□□ -0.96
GPC3-202ENST00000394299 OCR1Q9BZK8 76 aa9.02□□□□□ -0.96
GPC3-202ENST00000394299 LINC00472Q9H8W2 130 aa9.02□□□□□ -0.97
GPC3-202ENST00000394299 ZNF706Q9Y5V0 76 aaPredicted RBP9.01□□□□□ -0.97
GPC3-202ENST00000394299 SERP1Q9Y6X1 66 aa9□□□□□ -0.97
GPC3-202ENST00000394299 WFDC13Q8IUB5 93 aa9□□□□□ -0.97
GPC3-202ENST00000394299 VPS13BQ7Z7G8 4022 aa8.99□□□□□ -0.97
GPC3-202ENST00000394299 Q6ZSA8 131 aa8.99□□□□□ -0.97
GPC3-202ENST00000394299 HCG22E2RYF7 251 aa8.97□□□□□ -0.97
GPC3-202ENST00000394299 FP248Q71RG6 208 aaPredicted RBP8.97□□□□□ -0.97
GPC3-202ENST00000394299 PRO0628Q9UI54 55 aa8.97□□□□□ -0.97
GPC3-202ENST00000394299 KLKP1Q107X0 134 aa8.96□□□□□ -0.98
GPC3-202ENST00000394299 TMEM254Q8TBM7 123 aa8.94□□□□□ -0.98
GPC3-202ENST00000394299 Q96NJ1 140 aa8.94□□□□□ -0.98
GPC3-202ENST00000394299 PRR15Q8IV56 129 aa8.93□□□□□ -0.98
GPC3-202ENST00000394299 A8MWP4 228 aa8.92□□□□□ -0.98
GPC3-202ENST00000394299 DYNC1H1Q14204 4646 aaKnown RBP8.91□□□□□ -0.98
GPC3-202ENST00000394299 SMIM26A0A096LP01 95 aa8.9□□□□□ -0.98
GPC3-202ENST00000394299 KMT2CQ8NEZ4 4911 aaKnown RBP8.9□□□□□ -0.98
GPC3-202ENST00000394299 KRTAP29-1A8MX34 341 aaPredicted RBP8.89□□□□□ -0.99
GPC3-202ENST00000394299 A0A087X002 238 aa8.88□□□□□ -0.99
GPC3-202ENST00000394299 A0A0U1RQV1 116 aa8.88□□□□□ -0.99
GPC3-202ENST00000394299 RYR2Q92736 4967 aa8.88□□□□□ -0.99
GPC3-202ENST00000394299 CASC2Q6XLA1 102 aa8.87□□□□□ -0.99
GPC3-202ENST00000394299 LCE6AA0A183 80 aa8.84□□□□□ -0.99
GPC3-202ENST00000394299 KRTAP13-2Q52LG2 175 aa8.84□□□□□ -0.99
GPC3-202ENST00000394299 MMP24-AS1A0A0U1RRL7 71 aa8.84□□□□□ -0.99
GPC3-202ENST00000394299 NDUFC1O43677 76 aa8.83□□□□□ -1
GPC3-202ENST00000394299 SPINK6Q6UWN8 80 aa8.83□□□□□ -1
GPC3-202ENST00000394299 NDUFB1O75438 58 aa8.82□□□□□ -1
GPC3-202ENST00000394299 FAT1Q14517 4588 aa8.82□□□□□ -1
GPC3-202ENST00000394299 IGHV6-1A0A0B4J1U7 121 aa8.81□□□□□ -1
GPC3-202ENST00000394299 FAM229BQ4G0N7 80 aa8.81□□□□□ -1
GPC3-202ENST00000394299 NOTCH2NLQ7Z3S9 236 aa8.81□□□□□ -1
GPC3-202ENST00000394299 SMR3BP02814 79 aaPredicted RBP8.8□□□□□ -1
GPC3-202ENST00000394299 KRTAP1-4P0C5Y4 121 aa8.79□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms