RNA–Protein interactions for RNA: ENST00000391813.5

SHANK1-203, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 1 (best) BASIC

Gene SHANK1, Length 4,785 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-203ENST00000391813 CASC10Q5T4H9 136 aa12.39□□□□□ -0.43
SHANK1-203ENST00000391813 SPRR1AP35321 89 aa12.39□□□□□ -0.43
SHANK1-203ENST00000391813 PRUNE2Q8WUY3 3088 aa12.38□□□□□ -0.43
SHANK1-203ENST00000391813 MMP24-AS1A0A0U1RRL7 71 aa12.36□□□□□ -0.43
SHANK1-203ENST00000391813 CFAP54Q96N23 3096 aa12.34□□□□□ -0.43
SHANK1-203ENST00000391813 PSORS1C2Q9UIG4 136 aa12.34□□□□□ -0.43
SHANK1-203ENST00000391813 UNC80Q8N2C7 3258 aa12.32□□□□□ -0.44
SHANK1-203ENST00000391813 WDFY4Q6ZS81 3184 aa12.32□□□□□ -0.44
SHANK1-203ENST00000391813 IGLV7-43P04211 117 aa12.32□□□□□ -0.44
SHANK1-203ENST00000391813 GCN1Q92616 2671 aaKnown RBP12.32□□□□□ -0.44
SHANK1-203ENST00000391813 ANAPC11Q9NYG5 84 aa12.31□□□□□ -0.44
SHANK1-203ENST00000391813 HRES1P13985 223 aa12.3□□□□□ -0.44
SHANK1-203ENST00000391813 LINC00304Q8N9R0 145 aa12.26□□□□□ -0.45
SHANK1-203ENST00000391813 H3BS24 57 aa12.25□□□□□ -0.45
SHANK1-203ENST00000391813 PRAC1Q96KF2 57 aa12.25□□□□□ -0.45
SHANK1-203ENST00000391813 LINC00472Q9H8W2 130 aa12.25□□□□□ -0.45
SHANK1-203ENST00000391813 Q8N1X5 172 aa12.23□□□□□ -0.45
SHANK1-203ENST00000391813 SPRR1BP22528 89 aa12.23□□□□□ -0.45
SHANK1-203ENST00000391813 SPINK7P58062 85 aa12.22□□□□□ -0.45
SHANK1-203ENST00000391813 NOTCH1P46531 2555 aa12.22□□□□□ -0.45
SHANK1-203ENST00000391813 A0A1B0GU33 70 aa12.19□□□□□ -0.46
SHANK1-203ENST00000391813 TNP2Q05952 138 aa12.17□□□□□ -0.46
SHANK1-203ENST00000391813 SMR3BP02814 79 aaPredicted RBP12.17□□□□□ -0.46
SHANK1-203ENST00000391813 TRIOO75962 3097 aa12.17□□□□□ -0.46
SHANK1-203ENST00000391813 XIRP2A4UGR9 3374 aa12.15□□□□□ -0.46
SHANK1-203ENST00000391813 ZCCHC13Q8WW36 166 aaKnown RBP12.14□□□□□ -0.47
SHANK1-203ENST00000391813 FLNCQ14315 2725 aa12.14□□□□□ -0.47
SHANK1-203ENST00000391813 ASB16-AS1Q495Z4 193 aa12.13□□□□□ -0.47
SHANK1-203ENST00000391813 CDH23Q9H251 3354 aa12.12□□□□□ -0.47
SHANK1-203ENST00000391813 UBR5O95071 2799 aaPredicted RBP12.09□□□□□ -0.47
SHANK1-203ENST00000391813 CSAG1Q6PB30 78 aa12.09□□□□□ -0.47
SHANK1-203ENST00000391813 C9orf92A6NGG3 77 aa12.08□□□□□ -0.48
SHANK1-203ENST00000391813 A0A0D9SG42 100 aa12.07□□□□□ -0.48
SHANK1-203ENST00000391813 KRTAP21-3Q3LHN1 58 aa12.07□□□□□ -0.48
SHANK1-203ENST00000391813 MAP1AP78559 2803 aaPredicted RBP12.03□□□□□ -0.48
SHANK1-203ENST00000391813 KRTAP29-1A8MX34 341 aaPredicted RBP12.02□□□□□ -0.49
SHANK1-203ENST00000391813 Q5W150 140 aa12.02□□□□□ -0.49
SHANK1-203ENST00000391813 KRTAP26-1Q6PEX3 210 aa12.02□□□□□ -0.49
SHANK1-203ENST00000391813 LUZP6Q538Z0 58 aa12□□□□□ -0.49
SHANK1-203ENST00000391813 LCE6AA0A183 80 aa12□□□□□ -0.49
SHANK1-203ENST00000391813 NBEAL1Q6ZS30 2694 aa12□□□□□ -0.49
SHANK1-203ENST00000391813 ITPR2Q14571 2701 aa11.98□□□□□ -0.49
SHANK1-203ENST00000391813 Q6ZR54 194 aa11.98□□□□□ -0.49
SHANK1-203ENST00000391813 DMAC1Q96GE9 116 aa11.98□□□□□ -0.49
SHANK1-203ENST00000391813 SZT2Q5T011 3432 aa11.96□□□□□ -0.49
SHANK1-203ENST00000391813 TNRC18O15417 2968 aaPredicted RBP11.96□□□□□ -0.49
SHANK1-203ENST00000391813 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.96□□□□□ -0.49
SHANK1-203ENST00000391813 VPS13AQ96RL7 3174 aa11.95□□□□□ -0.5
SHANK1-203ENST00000391813 KRTAP4-16G5E9R7 235 aaPredicted RBP11.95□□□□□ -0.5
SHANK1-203ENST00000391813 NSD1Q96L73 2696 aaPredicted RBP11.9□□□□□ -0.5
SHANK1-203ENST00000391813 PLAC8Q9NZF1 115 aa11.89□□□□□ -0.51
SHANK1-203ENST00000391813 ITPR1Q14643 2758 aa11.89□□□□□ -0.51
SHANK1-203ENST00000391813 A6NN06 94 aa11.87□□□□□ -0.51
SHANK1-203ENST00000391813 HIVEP1P15822 2718 aa11.87□□□□□ -0.51
SHANK1-203ENST00000391813 FREM2Q5SZK8 3169 aa11.83□□□□□ -0.52
SHANK1-203ENST00000391813 FRYLO94915 3013 aa11.81□□□□□ -0.52
SHANK1-203ENST00000391813 COX6B2Q6YFQ2 88 aa11.81□□□□□ -0.52
SHANK1-203ENST00000391813 SPATA8Q6RVD6 105 aa11.8□□□□□ -0.52
SHANK1-203ENST00000391813 CELSR3Q9NYQ7 3312 aa11.78□□□□□ -0.52
SHANK1-203ENST00000391813 KRTAP1-5Q9BYS1 174 aa11.77□□□□□ -0.52
SHANK1-203ENST00000391813 KMT2BQ9UMN6 2715 aaPredicted RBP11.77□□□□□ -0.53
SHANK1-203ENST00000391813 LINC00483Q53H64 154 aa11.74□□□□□ -0.53
SHANK1-203ENST00000391813 ATMQ13315 3056 aa11.74□□□□□ -0.53
SHANK1-203ENST00000391813 COL12A1Q99715 3063 aa11.71□□□□□ -0.53
SHANK1-203ENST00000391813 RPL37P61927 97 aaKnown RBP11.71□□□□□ -0.54
SHANK1-203ENST00000391813 ROMO1P60602 79 aa11.7□□□□□ -0.54
SHANK1-203ENST00000391813 DMXL2Q8TDJ6 3036 aa11.68□□□□□ -0.54
SHANK1-203ENST00000391813 VCANP13611 3396 aa11.67□□□□□ -0.54
SHANK1-203ENST00000391813 LAMA1P25391 3075 aa11.67□□□□□ -0.54
SHANK1-203ENST00000391813 APCP25054 2843 aa11.66□□□□□ -0.54
SHANK1-203ENST00000391813 A0A0A0MQY5 61 aa11.66□□□□□ -0.54
SHANK1-203ENST00000391813 COL6A3P12111 3177 aa11.66□□□□□ -0.54
SHANK1-203ENST00000391813 FRYQ5TBA9 3013 aa11.65□□□□□ -0.54
SHANK1-203ENST00000391813 NBEAL2Q6ZNJ1 2754 aa11.65□□□□□ -0.55
SHANK1-203ENST00000391813 UTP20O75691 2785 aaKnown RBP11.65□□□□□ -0.55
SHANK1-203ENST00000391813 H1FX-AS1Q4G0G2 97 aa11.64□□□□□ -0.55
SHANK1-203ENST00000391813 NBEAQ8NFP9 2946 aa11.64□□□□□ -0.55
SHANK1-203ENST00000391813 TACC2O95359 2948 aa11.63□□□□□ -0.55
SHANK1-203ENST00000391813 FLG2Q5D862 2391 aaPredicted RBP11.63□□□□□ -0.55
SHANK1-203ENST00000391813 KRTAP10-1P60331 282 aa11.59□□□□□ -0.55
SHANK1-203ENST00000391813 TENM4Q6N022 2769 aa11.59□□□□□ -0.55
SHANK1-203ENST00000391813 STAB2Q8WWQ8 2551 aa11.59□□□□□ -0.55
SHANK1-203ENST00000391813 DNAH14Q0VDD8 3507 aa11.58□□□□□ -0.55
SHANK1-203ENST00000391813 DMBT1Q9UGM3 2413 aaPredicted RBP11.58□□□□□ -0.56
SHANK1-203ENST00000391813 REV3LO60673 3130 aa11.57□□□□□ -0.56
SHANK1-203ENST00000391813 Q5VSD8 79 aa11.57□□□□□ -0.56
SHANK1-203ENST00000391813 A0A087X002 238 aa11.57□□□□□ -0.56
SHANK1-203ENST00000391813 SPTBN5Q9NRC6 3674 aaKnown RBP11.56□□□□□ -0.56
SHANK1-203ENST00000391813 KRTAP10-2P60368 255 aa11.56□□□□□ -0.56
SHANK1-203ENST00000391813 S4R3F8 94 aa11.54□□□□□ -0.56
SHANK1-203ENST00000391813 CAMK2N1Q7Z7J9 78 aa11.54□□□□□ -0.56
SHANK1-203ENST00000391813 A8MU10 97 aa11.54□□□□□ -0.56
SHANK1-203ENST00000391813 Q6ZSA8 131 aa11.5□□□□□ -0.57
SHANK1-203ENST00000391813 KRTAP25-1Q3LHN0 102 aa11.49□□□□□ -0.57
SHANK1-203ENST00000391813 EYSQ5T1H1 3165 aa11.49□□□□□ -0.57
SHANK1-203ENST00000391813 NIPBLQ6KC79 2804 aaeCLIP11.48□□□□□ -0.57
SHANK1-203ENST00000391813 SPEGQ15772 3267 aa11.48□□□□□ -0.57
SHANK1-203ENST00000391813 NOTCH2NLQ7Z3S9 236 aa11.47□□□□□ -0.57
SHANK1-203ENST00000391813 KALRNO60229 2985 aa11.44□□□□□ -0.58
SHANK1-203ENST00000391813 ADM2Q7Z4H4 148 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 103.9 ms