RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 SPINK7P58062 85 aa5.57□□□□□ -1.52
LIMCH1-202ENST00000381753 A0A1W2PNM2 257 aa5.55□□□□□ -1.52
LIMCH1-202ENST00000381753 CENPEQ02224 2701 aa5.54□□□□□ -1.52
LIMCH1-202ENST00000381753 C20orf166-AS1Q96NR2 134 aa5.53□□□□□ -1.52
LIMCH1-202ENST00000381753 GOLGB1Q14789 3259 aaKnown RBP5.52□□□□□ -1.53
LIMCH1-202ENST00000381753 STAB2Q8WWQ8 2551 aa5.52□□□□□ -1.53
LIMCH1-202ENST00000381753 IGSF10Q6WRI0 2623 aa5.5□□□□□ -1.53
LIMCH1-202ENST00000381753 M0QZ58 72 aa5.49□□□□□ -1.53
LIMCH1-202ENST00000381753 Q1T7F1 81 aa5.48□□□□□ -1.53
LIMCH1-202ENST00000381753 CHD6Q8TD26 2715 aa5.47□□□□□ -1.53
LIMCH1-202ENST00000381753 H7BZZ5 65 aa5.46□□□□□ -1.53
LIMCH1-202ENST00000381753 FLG2Q5D862 2391 aaPredicted RBP5.46□□□□□ -1.54
LIMCH1-202ENST00000381753 A0A1B0GU33 70 aa5.45□□□□□ -1.54
LIMCH1-202ENST00000381753 SPANXA2-OT1Q8N9U9 137 aa5.45□□□□□ -1.54
LIMCH1-202ENST00000381753 ZNF292O60281 2723 aa5.43□□□□□ -1.54
LIMCH1-202ENST00000381753 PANO1I0J062 215 aa5.42□□□□□ -1.54
LIMCH1-202ENST00000381753 KLKP1Q107X0 134 aa5.42□□□□□ -1.54
LIMCH1-202ENST00000381753 A0A087X002 238 aa5.41□□□□□ -1.54
LIMCH1-202ENST00000381753 Q5XG85 94 aa5.4□□□□□ -1.54
LIMCH1-202ENST00000381753 ITPR2Q14571 2701 aa5.4□□□□□ -1.55
LIMCH1-202ENST00000381753 DMAC1Q96GE9 116 aa5.4□□□□□ -1.55
LIMCH1-202ENST00000381753 TENM4Q6N022 2769 aa5.38□□□□□ -1.55
LIMCH1-202ENST00000381753 Q6ZRN7 208 aaPredicted RBP5.37□□□□□ -1.55
LIMCH1-202ENST00000381753 PRAC1Q96KF2 57 aa5.36□□□□□ -1.55
LIMCH1-202ENST00000381753 ADM2Q7Z4H4 148 aa5.36□□□□□ -1.55
LIMCH1-202ENST00000381753 PRRC2CQ9Y520 2896 aaKnown RBP5.36□□□□□ -1.55
LIMCH1-202ENST00000381753 UTRNP46939 3433 aa5.36□□□□□ -1.55
LIMCH1-202ENST00000381753 H1FX-AS1Q4G0G2 97 aa5.35□□□□□ -1.55
LIMCH1-202ENST00000381753 EIF4EBP3O60516 100 aaPredicted RBP5.34□□□□□ -1.55
LIMCH1-202ENST00000381753 REV3LO60673 3130 aa5.34□□□□□ -1.55
LIMCH1-202ENST00000381753 KRTAP29-1A8MX34 341 aaPredicted RBP5.33□□□□□ -1.56
LIMCH1-202ENST00000381753 FLNCQ14315 2725 aa5.33□□□□□ -1.56
LIMCH1-202ENST00000381753 RPS29P62273 56 aaKnown RBP5.33□□□□□ -1.56
LIMCH1-202ENST00000381753 A0A1B0GVY2 172 aa5.33□□□□□ -1.56
LIMCH1-202ENST00000381753 C5orf42Q9H799 3197 aa5.33□□□□□ -1.56
LIMCH1-202ENST00000381753 TRANK1O15050 2925 aa5.32□□□□□ -1.56
LIMCH1-202ENST00000381753 A0A0A0MQY5 61 aa5.32□□□□□ -1.56
LIMCH1-202ENST00000381753 RPL37P61927 97 aaKnown RBP5.32□□□□□ -1.56
LIMCH1-202ENST00000381753 KRTAP10-10P60014 251 aa5.32□□□□□ -1.56
LIMCH1-202ENST00000381753 CYSTM1Q9H1C7 97 aa5.31□□□□□ -1.56
LIMCH1-202ENST00000381753 SPRR1BP22528 89 aa5.3□□□□□ -1.56
LIMCH1-202ENST00000381753 SPRR1AP35321 89 aa5.29□□□□□ -1.56
LIMCH1-202ENST00000381753 DSPP15924 2871 aaKnown RBP5.29□□□□□ -1.56
LIMCH1-202ENST00000381753 Q5W150 140 aa5.28□□□□□ -1.56
LIMCH1-202ENST00000381753 KRTAP26-1Q6PEX3 210 aa5.27□□□□□ -1.57
LIMCH1-202ENST00000381753 MAP1AP78559 2803 aaPredicted RBP5.27□□□□□ -1.57
LIMCH1-202ENST00000381753 AKAP13Q12802 2813 aa5.27□□□□□ -1.57
LIMCH1-202ENST00000381753 CRYBG3Q68DQ2 2970 aa5.27□□□□□ -1.57
LIMCH1-202ENST00000381753 NSD1Q96L73 2696 aaPredicted RBP5.26□□□□□ -1.57
LIMCH1-202ENST00000381753 Q75L30 129 aa5.26□□□□□ -1.57
LIMCH1-202ENST00000381753 Q8N9P0 234 aaPredicted RBP5.26□□□□□ -1.57
LIMCH1-202ENST00000381753 HIVEP1P15822 2718 aa5.24□□□□□ -1.57
LIMCH1-202ENST00000381753 MMP24-AS1A0A0U1RRL7 71 aa5.24□□□□□ -1.57
LIMCH1-202ENST00000381753 A8MUU9 505 aa5.23□□□□□ -1.57
LIMCH1-202ENST00000381753 OCR1Q9BZK8 76 aa5.22□□□□□ -1.57
LIMCH1-202ENST00000381753 MGAQ8IWI9 3026 aa5.22□□□□□ -1.57
LIMCH1-202ENST00000381753 UBR5O95071 2799 aaPredicted RBP5.21□□□□□ -1.58
LIMCH1-202ENST00000381753 KMT2BQ9UMN6 2715 aaPredicted RBP5.21□□□□□ -1.58
LIMCH1-202ENST00000381753 FRYQ5TBA9 3013 aa5.19□□□□□ -1.58
LIMCH1-202ENST00000381753 PRO2289Q9P1D8 64 aa5.19□□□□□ -1.58
LIMCH1-202ENST00000381753 A0A0C4DFX4 3053 aa5.19□□□□□ -1.58
LIMCH1-202ENST00000381753 CHD7Q9P2D1 2997 aa5.18□□□□□ -1.58
LIMCH1-202ENST00000381753 TPRXLQ17RH7 258 aa5.18□□□□□ -1.58
LIMCH1-202ENST00000381753 KRTAP10-8P60410 259 aa5.17□□□□□ -1.58
LIMCH1-202ENST00000381753 LINC01558Q9Y6Z2 57 aa5.17□□□□□ -1.58
LIMCH1-202ENST00000381753 DNAH12Q6ZR08 3092 aa5.17□□□□□ -1.58
LIMCH1-202ENST00000381753 KRTAP13-2Q52LG2 175 aa5.17□□□□□ -1.58
LIMCH1-202ENST00000381753 ROMO1P60602 79 aa5.16□□□□□ -1.58
LIMCH1-202ENST00000381753 Q5VV11 94 aa5.15□□□□□ -1.59
LIMCH1-202ENST00000381753 LINC00472Q9H8W2 130 aa5.15□□□□□ -1.59
LIMCH1-202ENST00000381753 RANBP2P49792 3224 aaKnown RBP5.14□□□□□ -1.59
LIMCH1-202ENST00000381753 PRUNE2Q8WUY3 3088 aa5.11□□□□□ -1.59
LIMCH1-202ENST00000381753 CHD9Q3L8U1 2897 aa5.11□□□□□ -1.59
LIMCH1-202ENST00000381753 Q8NDZ9 215 aa5.11□□□□□ -1.59
LIMCH1-202ENST00000381753 XP32Q5T750 250 aa5.11□□□□□ -1.59
LIMCH1-202ENST00000381753 PCNTO95613 3336 aa5.09□□□□□ -1.59
LIMCH1-202ENST00000381753 KRTAP16-1A8MUX0 517 aa5.08□□□□□ -1.6
LIMCH1-202ENST00000381753 KRTAP11-1Q8IUC1 163 aa5.07□□□□□ -1.6
LIMCH1-202ENST00000381753 ITPR1Q14643 2758 aa5.06□□□□□ -1.6
LIMCH1-202ENST00000381753 ASB16-AS1Q495Z4 193 aa5.05□□□□□ -1.6
LIMCH1-202ENST00000381753 LAMA3Q16787 3333 aa5.02□□□□□ -1.61
LIMCH1-202ENST00000381753 TNP1P09430 55 aa5.02□□□□□ -1.61
LIMCH1-202ENST00000381753 SPATA8Q6RVD6 105 aa5.01□□□□□ -1.61
LIMCH1-202ENST00000381753 UTP20O75691 2785 aaKnown RBP5□□□□□ -1.61
LIMCH1-202ENST00000381753 WDFY4Q6ZS81 3184 aa4.99□□□□□ -1.61
LIMCH1-202ENST00000381753 TENM2Q9NT68 2774 aa4.98□□□□□ -1.61
LIMCH1-202ENST00000381753 CFAP54Q96N23 3096 aa4.96□□□□□ -1.61
LIMCH1-202ENST00000381753 KRTAP4-16G5E9R7 235 aaPredicted RBP4.96□□□□□ -1.61
LIMCH1-202ENST00000381753 HTTP42858 3142 aa4.96□□□□□ -1.62
LIMCH1-202ENST00000381753 LAMA2P24043 3122 aaKnown RBP4.95□□□□□ -1.62
LIMCH1-202ENST00000381753 A8MU10 97 aa4.94□□□□□ -1.62
LIMCH1-202ENST00000381753 MKI67P46013 3256 aaKnown RBP4.93□□□□□ -1.62
LIMCH1-202ENST00000381753 A6NN06 94 aa4.93□□□□□ -1.62
LIMCH1-202ENST00000381753 NOTCH2NLQ7Z3S9 236 aa4.93□□□□□ -1.62
LIMCH1-202ENST00000381753 FREM2Q5SZK8 3169 aa4.92□□□□□ -1.62
LIMCH1-202ENST00000381753 NDUFAF8A1L188 74 aa4.92□□□□□ -1.62
LIMCH1-202ENST00000381753 KRTAP13-3Q3SY46 172 aa4.92□□□□□ -1.62
LIMCH1-202ENST00000381753 TACC2O95359 2948 aa4.92□□□□□ -1.62
LIMCH1-202ENST00000381753 KRTAP1-4P0C5Y4 121 aa4.92□□□□□ -1.62
LIMCH1-202ENST00000381753 KRTAP13-1Q8IUC0 172 aa4.92□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms