RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 FAM218AQ96MZ4 157 aa7.6□□□□□ -1.19
VPS28-202ENST00000377348 A0A0G2JQZ4 141 aa7.59□□□□□ -1.19
VPS28-202ENST00000377348 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.58□□□□□ -1.2
VPS28-202ENST00000377348 IGLV7-46A0A075B6I9 117 aa7.57□□□□□ -1.2
VPS28-202ENST00000377348 H0YGX0 51 aa7.57□□□□□ -1.2
VPS28-202ENST00000377348 TRIAP1O43715 76 aa7.57□□□□□ -1.2
VPS28-202ENST00000377348 RPS29P62273 56 aaKnown RBP7.57□□□□□ -1.2
VPS28-202ENST00000377348 SNHG12Q9BXW3 62 aa7.57□□□□□ -1.2
VPS28-202ENST00000377348 RNF213Q63HN8 5207 aa7.56□□□□□ -1.2
VPS28-202ENST00000377348 M0R143 59 aa7.55□□□□□ -1.2
VPS28-202ENST00000377348 F8WEM9 126 aa7.53□□□□□ -1.2
VPS28-202ENST00000377348 PSMB2P49721 201 aa7.53□□□□□ -1.2
VPS28-202ENST00000377348 CLEC2BQ92478 149 aa7.53□□□□□ -1.2
VPS28-202ENST00000377348 FP248Q71RG6 208 aaPredicted RBP7.52□□□□□ -1.21
VPS28-202ENST00000377348 SNCGO76070 127 aa7.51□□□□□ -1.21
VPS28-202ENST00000377348 CD164Q04900 197 aa7.51□□□□□ -1.21
VPS28-202ENST00000377348 BATFQ16520 125 aa7.51□□□□□ -1.21
VPS28-202ENST00000377348 TPRXLQ17RH7 258 aa7.51□□□□□ -1.21
VPS28-202ENST00000377348 OCIAD2Q56VL3 154 aa7.5□□□□□ -1.21
VPS28-202ENST00000377348 PPDPFLQ8WWR9 84 aa7.5□□□□□ -1.21
VPS28-202ENST00000377348 LIMD2Q9BT23 127 aa7.5□□□□□ -1.21
VPS28-202ENST00000377348 IGLV8-61A0A075B6I0 122 aa7.49□□□□□ -1.21
VPS28-202ENST00000377348 A0A1B0GX51 115 aa7.49□□□□□ -1.21
VPS28-202ENST00000377348 H3BUT2 72 aa7.49□□□□□ -1.21
VPS28-202ENST00000377348 IGFL1Q6UW32 110 aa7.48□□□□□ -1.21
VPS28-202ENST00000377348 CDIP1Q9H305 208 aa7.48□□□□□ -1.21
VPS28-202ENST00000377348 COX6CP09669 75 aa7.47□□□□□ -1.21
VPS28-202ENST00000377348 KRTAP13-3Q3SY46 172 aa7.47□□□□□ -1.21
VPS28-202ENST00000377348 TAX1BP3O14907 124 aa7.46□□□□□ -1.22
VPS28-202ENST00000377348 Q6JHZ5 121 aa7.46□□□□□ -1.22
VPS28-202ENST00000377348 FABP2P12104 132 aa7.45□□□□□ -1.22
VPS28-202ENST00000377348 NDUFV3P56181 108 aaKnown RBP7.45□□□□□ -1.22
VPS28-202ENST00000377348 MUC17Q685J3 4493 aa7.44□□□□□ -1.22
VPS28-202ENST00000377348 DNAL4O96015 105 aa7.44□□□□□ -1.22
VPS28-202ENST00000377348 SCGB1C2P0DMR2 95 aa7.44□□□□□ -1.22
VPS28-202ENST00000377348 COL5A1-AS1Q5SY13 56 aa7.43□□□□□ -1.22
VPS28-202ENST00000377348 Q5XG85 94 aa7.43□□□□□ -1.22
VPS28-202ENST00000377348 NAA38Q9BRA0 125 aaKnown RBP7.43□□□□□ -1.22
VPS28-202ENST00000377348 MUC2Q02817 5179 aa7.43□□□□□ -1.22
VPS28-202ENST00000377348 ORMDL1Q9P0S3 153 aa7.42□□□□□ -1.22
VPS28-202ENST00000377348 TRBV7-7A0A0K0K1E9 115 aa7.41□□□□□ -1.22
VPS28-202ENST00000377348 H3BMG7 143 aa7.41□□□□□ -1.22
VPS28-202ENST00000377348 LST1O00453 97 aa7.41□□□□□ -1.22
VPS28-202ENST00000377348 GHRHP01286 108 aa7.41□□□□□ -1.22
VPS28-202ENST00000377348 C1orf195Q5TG92 126 aa7.41□□□□□ -1.22
VPS28-202ENST00000377348 A0A1B0GV72 72 aa7.4□□□□□ -1.22
VPS28-202ENST00000377348 C9orf118A6NHY6 69 aa7.39□□□□□ -1.23
VPS28-202ENST00000377348 TCL1BO95988 128 aa7.39□□□□□ -1.23
VPS28-202ENST00000377348 TRACP01848 142 aa7.39□□□□□ -1.23
VPS28-202ENST00000377348 C9orf92A6NGG3 77 aa7.36□□□□□ -1.23
VPS28-202ENST00000377348 H3BQ85 93 aa7.36□□□□□ -1.23
VPS28-202ENST00000377348 TMEM256-PLSCR3K7ERE1 68 aa7.36□□□□□ -1.23
VPS28-202ENST00000377348 A0A1W2PPM0 123 aa7.35□□□□□ -1.23
VPS28-202ENST00000377348 TEN1Q86WV5 123 aa7.35□□□□□ -1.23
VPS28-202ENST00000377348 XP32Q5T750 250 aa7.34□□□□□ -1.23
VPS28-202ENST00000377348 Q6Q795 121 aa7.34□□□□□ -1.23
VPS28-202ENST00000377348 A0A1W2PNM2 257 aa7.33□□□□□ -1.24
VPS28-202ENST00000377348 UBE2V1Q13404 147 aa7.33□□□□□ -1.24
VPS28-202ENST00000377348 ASB16-AS1Q495Z4 193 aa7.33□□□□□ -1.24
VPS28-202ENST00000377348 A0A087WSZ3 146 aa7.32□□□□□ -1.24
VPS28-202ENST00000377348 BAALC-AS2P0C853 105 aa7.32□□□□□ -1.24
VPS28-202ENST00000377348 ATXN8Q156A1 80 aa7.32□□□□□ -1.24
VPS28-202ENST00000377348 ANKRD29Q8N6D5 301 aa7.32□□□□□ -1.24
VPS28-202ENST00000377348 SS18L2Q9UHA2 77 aa7.29□□□□□ -1.24
VPS28-202ENST00000377348 LYRM7Q5U5X0 104 aa7.28□□□□□ -1.24
VPS28-202ENST00000377348 A0A1B0GV90 55 aa7.27□□□□□ -1.25
VPS28-202ENST00000377348 TRBV7-4A0A0J9YYF1 115 aa7.26□□□□□ -1.25
VPS28-202ENST00000377348 K7EP34 96 aa7.26□□□□□ -1.25
VPS28-202ENST00000377348 CCKP06307 115 aa7.26□□□□□ -1.25
VPS28-202ENST00000377348 SEC61BP60468 96 aaKnown RBP7.26□□□□□ -1.25
VPS28-202ENST00000377348 RBM3P98179 157 aaKnown RBP7.26□□□□□ -1.25
VPS28-202ENST00000377348 SPCS1Q9Y6A9 102 aa7.26□□□□□ -1.25
VPS28-202ENST00000377348 TRBV20-1A0A075B6N2 111 aa7.25□□□□□ -1.25
VPS28-202ENST00000377348 Q96NJ1 140 aa7.25□□□□□ -1.25
VPS28-202ENST00000377348 VPS25Q9BRG1 176 aa7.25□□□□□ -1.25
VPS28-202ENST00000377348 FAT4Q6V0I7 4981 aa7.25□□□□□ -1.25
VPS28-202ENST00000377348 C9JAW5 83 aa7.24□□□□□ -1.25
VPS28-202ENST00000377348 DSCR8Q96T75 97 aa7.24□□□□□ -1.25
VPS28-202ENST00000377348 KRTAP4-1Q9BYQ7 146 aa7.24□□□□□ -1.25
VPS28-202ENST00000377348 PCOTHQ58A44 107 aa7.21□□□□□ -1.26
VPS28-202ENST00000377348 PRO0461Q9UI25 63 aa7.21□□□□□ -1.26
VPS28-202ENST00000377348 MTURNQ8N3F0 131 aa7.2□□□□□ -1.26
VPS28-202ENST00000377348 OBSCN-AS1Q96MR7 158 aa7.2□□□□□ -1.26
VPS28-202ENST00000377348 SMCPP49901 116 aaPredicted RBP7.19□□□□□ -1.26
VPS28-202ENST00000377348 JMJD7-PLA2G4BH0Y9G9 81 aa7.18□□□□□ -1.26
VPS28-202ENST00000377348 RPL37P61927 97 aaKnown RBP7.18□□□□□ -1.26
VPS28-202ENST00000377348 DEFB116Q30KQ4 102 aa7.18□□□□□ -1.26
VPS28-202ENST00000377348 SIGMAR1Q99720 223 aa7.18□□□□□ -1.26
VPS28-202ENST00000377348 Q6ZQT0 140 aa7.17□□□□□ -1.26
VPS28-202ENST00000377348 GTF2H5Q6ZYL4 71 aa7.17□□□□□ -1.26
VPS28-202ENST00000377348 LINC00472Q9H8W2 130 aa7.17□□□□□ -1.26
VPS28-202ENST00000377348 C14orf132Q9NPU4 83 aa7.17□□□□□ -1.26
VPS28-202ENST00000377348 IGKV4-1P06312 121 aa7.16□□□□□ -1.26
VPS28-202ENST00000377348 LOC110117498A0A087WWA1 95 aa7.15□□□□□ -1.26
VPS28-202ENST00000377348 A0A0U1RQV1 116 aa7.15□□□□□ -1.26
VPS28-202ENST00000377348 H3BT86 120 aa7.14□□□□□ -1.27
VPS28-202ENST00000377348 DSCR10P59022 87 aa7.14□□□□□ -1.27
VPS28-202ENST00000377348 PDE6GP18545 87 aa7.1□□□□□ -1.27
VPS28-202ENST00000377348 Q75L30 129 aa7.1□□□□□ -1.27
VPS28-202ENST00000377348 F8W1H4 67 aa7.09□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms