RNA–Protein interactions for RNA: ENST00000345617.7

HDAC4-201, Transcript of histone deacetylase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HDAC4, Length 8,976 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-201ENST00000345617 UTP20O75691 2785 aaKnown RBP12.25□□□□□ -0.45
HDAC4-201ENST00000345617 CSAG1Q6PB30 78 aa12.22□□□□□ -0.45
HDAC4-201ENST00000345617 PCNTO95613 3336 aa12.22□□□□□ -0.45
HDAC4-201ENST00000345617 ZNF575Q86XF7 245 aa12.21□□□□□ -0.45
HDAC4-201ENST00000345617 GOLGB1Q14789 3259 aaKnown RBP12.2□□□□□ -0.46
HDAC4-201ENST00000345617 KRTAP10-11P60412 298 aa12.19□□□□□ -0.46
HDAC4-201ENST00000345617 CFAP54Q96N23 3096 aa12.18□□□□□ -0.46
HDAC4-201ENST00000345617 ITPR1Q14643 2758 aa12.16□□□□□ -0.46
HDAC4-201ENST00000345617 Q6ZSA8 131 aa12.16□□□□□ -0.46
HDAC4-201ENST00000345617 NBEAL2Q6ZNJ1 2754 aa12.16□□□□□ -0.46
HDAC4-201ENST00000345617 ANAPC11Q9NYG5 84 aa12.16□□□□□ -0.46
HDAC4-201ENST00000345617 K7EIL1 84 aa12.16□□□□□ -0.46
HDAC4-201ENST00000345617 ROMO1P60602 79 aa12.16□□□□□ -0.46
HDAC4-201ENST00000345617 S4R3F8 94 aa12.14□□□□□ -0.47
HDAC4-201ENST00000345617 NSD1Q96L73 2696 aaPredicted RBP12.14□□□□□ -0.47
HDAC4-201ENST00000345617 MMP24-AS1A0A0U1RRL7 71 aa12.13□□□□□ -0.47
HDAC4-201ENST00000345617 ZCCHC13Q8WW36 166 aaKnown RBP12.12□□□□□ -0.47
HDAC4-201ENST00000345617 SPINK7P58062 85 aa12.1□□□□□ -0.47
HDAC4-201ENST00000345617 A0A096LNT2 108 aa12.09□□□□□ -0.47
HDAC4-201ENST00000345617 A0A0C4DFX4 3053 aa12.08□□□□□ -0.48
HDAC4-201ENST00000345617 RPL37P61927 97 aaKnown RBP12.07□□□□□ -0.48
HDAC4-201ENST00000345617 PRAC1Q96KF2 57 aa12.07□□□□□ -0.48
HDAC4-201ENST00000345617 C5orf42Q9H799 3197 aa12.06□□□□□ -0.48
HDAC4-201ENST00000345617 LINC00472Q9H8W2 130 aa12.02□□□□□ -0.49
HDAC4-201ENST00000345617 KRTAP16-1A8MUX0 517 aa12.01□□□□□ -0.49
HDAC4-201ENST00000345617 SPRR1AP35321 89 aa12.01□□□□□ -0.49
HDAC4-201ENST00000345617 Q5W150 140 aa12.01□□□□□ -0.49
HDAC4-201ENST00000345617 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12□□□□□ -0.49
HDAC4-201ENST00000345617 R4GN34 69 aa12□□□□□ -0.49
HDAC4-201ENST00000345617 CYSTM1Q9H1C7 97 aa11.99□□□□□ -0.49
HDAC4-201ENST00000345617 SPRR1BP22528 89 aa11.96□□□□□ -0.49
HDAC4-201ENST00000345617 IGSF10Q6WRI0 2623 aa11.96□□□□□ -0.49
HDAC4-201ENST00000345617 Q6ZR54 194 aa11.92□□□□□ -0.5
HDAC4-201ENST00000345617 UBR5O95071 2799 aaPredicted RBP11.92□□□□□ -0.5
HDAC4-201ENST00000345617 CASC10Q5T4H9 136 aa11.92□□□□□ -0.5
HDAC4-201ENST00000345617 TRANK1O15050 2925 aa11.92□□□□□ -0.5
HDAC4-201ENST00000345617 UTRNP46939 3433 aa11.88□□□□□ -0.51
HDAC4-201ENST00000345617 SMR3BP02814 79 aaPredicted RBP11.88□□□□□ -0.51
HDAC4-201ENST00000345617 PLAC8Q9NZF1 115 aa11.88□□□□□ -0.51
HDAC4-201ENST00000345617 LAMA2P24043 3122 aaKnown RBP11.88□□□□□ -0.51
HDAC4-201ENST00000345617 A0A087X002 238 aa11.87□□□□□ -0.51
HDAC4-201ENST00000345617 H1FX-AS1Q4G0G2 97 aa11.86□□□□□ -0.51
HDAC4-201ENST00000345617 DSPP15924 2871 aaKnown RBP11.82□□□□□ -0.52
HDAC4-201ENST00000345617 KRTAP10-3P60369 221 aa11.78□□□□□ -0.52
HDAC4-201ENST00000345617 MGAQ8IWI9 3026 aa11.78□□□□□ -0.52
HDAC4-201ENST00000345617 M0R2T5 61 aa11.77□□□□□ -0.52
HDAC4-201ENST00000345617 OXTP01178 125 aa11.77□□□□□ -0.53
HDAC4-201ENST00000345617 SPATA8Q6RVD6 105 aa11.77□□□□□ -0.53
HDAC4-201ENST00000345617 SEC61BP60468 96 aaKnown RBP11.76□□□□□ -0.53
HDAC4-201ENST00000345617 LRBAP50851 2863 aa11.76□□□□□ -0.53
HDAC4-201ENST00000345617 FRYQ5TBA9 3013 aa11.7□□□□□ -0.54
HDAC4-201ENST00000345617 FRYLO94915 3013 aa11.68□□□□□ -0.54
HDAC4-201ENST00000345617 KRTAP26-1Q6PEX3 210 aa11.67□□□□□ -0.54
HDAC4-201ENST00000345617 Q8NDZ9 215 aa11.62□□□□□ -0.55
HDAC4-201ENST00000345617 M0QZ58 72 aa11.62□□□□□ -0.55
HDAC4-201ENST00000345617 PANO1I0J062 215 aa11.61□□□□□ -0.55
HDAC4-201ENST00000345617 KRTAP25-1Q3LHN0 102 aa11.61□□□□□ -0.55
HDAC4-201ENST00000345617 A6NN06 94 aa11.6□□□□□ -0.55
HDAC4-201ENST00000345617 VPS13AQ96RL7 3174 aa11.58□□□□□ -0.56
HDAC4-201ENST00000345617 CHD7Q9P2D1 2997 aa11.56□□□□□ -0.56
HDAC4-201ENST00000345617 PLAC4Q8WY50 150 aa11.56□□□□□ -0.56
HDAC4-201ENST00000345617 FLNCQ14315 2725 aa11.56□□□□□ -0.56
HDAC4-201ENST00000345617 CHD9Q3L8U1 2897 aa11.53□□□□□ -0.56
HDAC4-201ENST00000345617 KRTAP29-1A8MX34 341 aaPredicted RBP11.53□□□□□ -0.56
HDAC4-201ENST00000345617 KRTAP1-3Q8IUG1 177 aa11.53□□□□□ -0.56
HDAC4-201ENST00000345617 KALRNO60229 2985 aa11.5□□□□□ -0.57
HDAC4-201ENST00000345617 RPS29P62273 56 aaKnown RBP11.5□□□□□ -0.57
HDAC4-201ENST00000345617 KRTAP1-1Q07627 177 aa11.47□□□□□ -0.57
HDAC4-201ENST00000345617 KRTAP4-16G5E9R7 235 aaPredicted RBP11.46□□□□□ -0.57
HDAC4-201ENST00000345617 LCE6AA0A183 80 aa11.46□□□□□ -0.58
HDAC4-201ENST00000345617 ADM2Q7Z4H4 148 aa11.45□□□□□ -0.58
HDAC4-201ENST00000345617 ASH1LQ9NR48 2969 aaKnown RBP11.43□□□□□ -0.58
HDAC4-201ENST00000345617 NIPBLQ6KC79 2804 aaeCLIP11.43□□□□□ -0.58
HDAC4-201ENST00000345617 TRIOO75962 3097 aa11.42□□□□□ -0.58
HDAC4-201ENST00000345617 TACC2O95359 2948 aa11.35□□□□□ -0.59
HDAC4-201ENST00000345617 HIVEP1P15822 2718 aa11.35□□□□□ -0.59
HDAC4-201ENST00000345617 NF1P21359 2839 aa11.34□□□□□ -0.59
HDAC4-201ENST00000345617 NDUFAF8A1L188 74 aa11.28□□□□□ -0.6
HDAC4-201ENST00000345617 PP632Q6XCG6 107 aa11.28□□□□□ -0.6
HDAC4-201ENST00000345617 TENM3Q9P273 2699 aa11.27□□□□□ -0.6
HDAC4-201ENST00000345617 TENM1Q9UKZ4 2725 aa11.27□□□□□ -0.6
HDAC4-201ENST00000345617 NBEAQ8NFP9 2946 aa11.25□□□□□ -0.61
HDAC4-201ENST00000345617 C20orf166-AS1Q96NR2 134 aa11.24□□□□□ -0.61
HDAC4-201ENST00000345617 CELSR2Q9HCU4 2923 aa11.22□□□□□ -0.61
HDAC4-201ENST00000345617 Q5VSD8 79 aa11.2□□□□□ -0.62
HDAC4-201ENST00000345617 PRUNE2Q8WUY3 3088 aa11.2□□□□□ -0.62
HDAC4-201ENST00000345617 KRTAP1-5Q9BYS1 174 aa11.19□□□□□ -0.62
HDAC4-201ENST00000345617 WDFY4Q6ZS81 3184 aa11.17□□□□□ -0.62
HDAC4-201ENST00000345617 A8MUU9 505 aa11.12□□□□□ -0.63
HDAC4-201ENST00000345617 TGP01266 2768 aa11.09□□□□□ -0.63
HDAC4-201ENST00000345617 COL12A1Q99715 3063 aa11.08□□□□□ -0.63
HDAC4-201ENST00000345617 FREM2Q5SZK8 3169 aa11.08□□□□□ -0.64
HDAC4-201ENST00000345617 NOTCH2NLQ7Z3S9 236 aa11.08□□□□□ -0.64
HDAC4-201ENST00000345617 ZZEF1O43149 2961 aa11.07□□□□□ -0.64
HDAC4-201ENST00000345617 TNP1P09430 55 aa11.07□□□□□ -0.64
HDAC4-201ENST00000345617 DMXL2Q8TDJ6 3036 aa11.06□□□□□ -0.64
HDAC4-201ENST00000345617 PDZD2O15018 2839 aa11.04□□□□□ -0.64
HDAC4-201ENST00000345617 RANBP2P49792 3224 aaKnown RBP11.04□□□□□ -0.64
HDAC4-201ENST00000345617 XIRP2A4UGR9 3374 aa11.02□□□□□ -0.64
HDAC4-201ENST00000345617 KRTAP11-1Q8IUC1 163 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 94.6 ms