RNA–Protein interactions for RNA: ENST00000334258.9

SYNE3-201, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SYNE3, Length 3,275 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-201ENST00000334258 HCG22E2RYF7 251 aa8.85□□□□□ -0.99
SYNE3-201ENST00000334258 CHKB-CPT1BH3BT56 60 aa8.84□□□□□ -0.99
SYNE3-201ENST00000334258 C16orf90A8MZG2 172 aa8.83□□□□□ -1
SYNE3-201ENST00000334258 MDFIQ99750 246 aa8.83□□□□□ -1
SYNE3-201ENST00000334258 IGLV1-50A0A075B6I6 118 aa8.82□□□□□ -1
SYNE3-201ENST00000334258 PSCAO43653 123 aa8.82□□□□□ -1
SYNE3-201ENST00000334258 LCE6AA0A183 80 aa8.82□□□□□ -1
SYNE3-201ENST00000334258 TNP2Q05952 138 aa8.82□□□□□ -1
SYNE3-201ENST00000334258 MP68P56378 58 aa8.81□□□□□ -1
SYNE3-201ENST00000334258 ZCCHC13Q8WW36 166 aaKnown RBP8.81□□□□□ -1
SYNE3-201ENST00000334258 SPRR4Q96PI1 79 aa8.81□□□□□ -1
SYNE3-201ENST00000334258 LINC01556Q5JQF7 62 aa8.8□□□□□ -1
SYNE3-201ENST00000334258 Q5VV11 94 aa8.8□□□□□ -1
SYNE3-201ENST00000334258 C8orf87E5RJ46 101 aa8.79□□□□□ -1
SYNE3-201ENST00000334258 H3BNG1 76 aa8.79□□□□□ -1
SYNE3-201ENST00000334258 LINC00476Q8WZB0 136 aa8.79□□□□□ -1
SYNE3-201ENST00000334258 LINC00208Q96KT6 92 aa8.79□□□□□ -1
SYNE3-201ENST00000334258 TGP01266 2768 aa8.79□□□□□ -1
SYNE3-201ENST00000334258 DEFB131BA0A096LNP1 70 aa8.78□□□□□ -1
SYNE3-201ENST00000334258 KRTAP4-16G5E9R7 235 aaPredicted RBP8.78□□□□□ -1
SYNE3-201ENST00000334258 NDUFB1O75438 58 aa8.78□□□□□ -1
SYNE3-201ENST00000334258 A0A087WSZ3 146 aa8.77□□□□□ -1.01
SYNE3-201ENST00000334258 DNHD1Q96M86 4753 aa8.76□□□□□ -1.01
SYNE3-201ENST00000334258 SPRR1AP35321 89 aa8.76□□□□□ -1.01
SYNE3-201ENST00000334258 CASC10Q5T4H9 136 aa8.75□□□□□ -1.01
SYNE3-201ENST00000334258 RPL37AP61513 92 aaKnown RBP8.75□□□□□ -1.01
SYNE3-201ENST00000334258 CYP4F30PQ9H0H9 118 aa8.74□□□□□ -1.01
SYNE3-201ENST00000334258 UBE2AP49459 152 aa8.74□□□□□ -1.01
SYNE3-201ENST00000334258 REG3GQ6UW15 175 aa8.74□□□□□ -1.01
SYNE3-201ENST00000334258 TLX1NBP0CAT3 122 aa8.74□□□□□ -1.01
SYNE3-201ENST00000334258 IGFL1Q6UW32 110 aa8.74□□□□□ -1.01
SYNE3-201ENST00000334258 B9D2Q9BPU9 175 aa8.74□□□□□ -1.01
SYNE3-201ENST00000334258 PRR15LQ9BU68 103 aa8.74□□□□□ -1.01
SYNE3-201ENST00000334258 PLA2G2DQ9UNK4 145 aa8.74□□□□□ -1.01
SYNE3-201ENST00000334258 PRLHP81277 87 aa8.72□□□□□ -1.01
SYNE3-201ENST00000334258 LCA10Q71F78 164 aa8.72□□□□□ -1.01
SYNE3-201ENST00000334258 KRTAP7-1Q8IUC3 87 aa8.72□□□□□ -1.01
SYNE3-201ENST00000334258 NDUFS5O43920 106 aa8.71□□□□□ -1.01
SYNE3-201ENST00000334258 A6NED7 52 aa8.71□□□□□ -1.02
SYNE3-201ENST00000334258 HUWE1Q7Z6Z7 4374 aaKnown RBP8.71□□□□□ -1.02
SYNE3-201ENST00000334258 IGLV5-37A0A075B6J1 123 aa8.7□□□□□ -1.02
SYNE3-201ENST00000334258 IGKV2-24A0A0C4DH68 120 aa8.7□□□□□ -1.02
SYNE3-201ENST00000334258 K7EIL1 84 aa8.7□□□□□ -1.02
SYNE3-201ENST00000334258 H0Y9P7 68 aa8.69□□□□□ -1.02
SYNE3-201ENST00000334258 A6NN06 94 aa8.69□□□□□ -1.02
SYNE3-201ENST00000334258 DNAH10OSP0CZ25 163 aa8.69□□□□□ -1.02
SYNE3-201ENST00000334258 CASC2Q6XLA1 102 aa8.68□□□□□ -1.02
SYNE3-201ENST00000334258 ATP11AUNQ6ZP68 121 aa8.67□□□□□ -1.02
SYNE3-201ENST00000334258 MEGF8Q7Z7M0 2845 aa8.67□□□□□ -1.02
SYNE3-201ENST00000334258 C7orf65Q6ZTY9 151 aa8.65□□□□□ -1.02
SYNE3-201ENST00000334258 A0A096LNI7 61 aa8.65□□□□□ -1.02
SYNE3-201ENST00000334258 PHF5AQ7RTV0 110 aaKnown RBP8.65□□□□□ -1.02
SYNE3-201ENST00000334258 DNAH3Q8TD57 4116 aa8.65□□□□□ -1.02
SYNE3-201ENST00000334258 H0Y9J4 135 aa8.62□□□□□ -1.03
SYNE3-201ENST00000334258 Q8N9P0 234 aaPredicted RBP8.62□□□□□ -1.03
SYNE3-201ENST00000334258 PRAC1Q96KF2 57 aa8.62□□□□□ -1.03
SYNE3-201ENST00000334258 DNAH10Q8IVF4 4471 aa8.62□□□□□ -1.03
SYNE3-201ENST00000334258 DNAH7Q8WXX0 4024 aa8.61□□□□□ -1.03
SYNE3-201ENST00000334258 PRKDCP78527 4128 aaKnown RBP8.61□□□□□ -1.03
SYNE3-201ENST00000334258 LIMD2Q9BT23 127 aa8.6□□□□□ -1.03
SYNE3-201ENST00000334258 KRTAP29-1A8MX34 341 aaPredicted RBP8.6□□□□□ -1.03
SYNE3-201ENST00000334258 SPANXA2-OT1Q8N9U9 137 aa8.59□□□□□ -1.03
SYNE3-201ENST00000334258 CNBPP62633 177 aaKnown RBP8.58□□□□□ -1.04
SYNE3-201ENST00000334258 H3BPC8 53 aa8.57□□□□□ -1.04
SYNE3-201ENST00000334258 A8MWP4 228 aa8.57□□□□□ -1.04
SYNE3-201ENST00000334258 PRR26Q8N8Z3 221 aa8.57□□□□□ -1.04
SYNE3-201ENST00000334258 DNAH9Q9NYC9 4486 aa8.56□□□□□ -1.04
SYNE3-201ENST00000334258 PCOTHQ58A44 107 aa8.56□□□□□ -1.04
SYNE3-201ENST00000334258 MOBPQ13875 183 aa8.56□□□□□ -1.04
SYNE3-201ENST00000334258 IGLV8-61A0A075B6I0 122 aa8.55□□□□□ -1.04
SYNE3-201ENST00000334258 SRRM2Q9UQ35 2752 aaKnown RBP8.55□□□□□ -1.04
SYNE3-201ENST00000334258 COA5Q86WW8 74 aa8.54□□□□□ -1.04
SYNE3-201ENST00000334258 CHTF8P0CG12 524 aa8.51□□□□□ -1.05
SYNE3-201ENST00000334258 LINC00472Q9H8W2 130 aa8.51□□□□□ -1.05
SYNE3-201ENST00000334258 ADM2Q7Z4H4 148 aa8.51□□□□□ -1.05
SYNE3-201ENST00000334258 CDC42SE1Q9NRR8 79 aa8.51□□□□□ -1.05
SYNE3-201ENST00000334258 LINC00313P59037 77 aa8.5□□□□□ -1.05
SYNE3-201ENST00000334258 C9orf163Q8N9P6 203 aa8.5□□□□□ -1.05
SYNE3-201ENST00000334258 PLECQ15149 4684 aaKnown RBP8.5□□□□□ -1.05
SYNE3-201ENST00000334258 Q75L30 129 aa8.5□□□□□ -1.05
SYNE3-201ENST00000334258 FBN3Q75N90 2809 aa8.49□□□□□ -1.05
SYNE3-201ENST00000334258 SPAG11AQ6PDA7 123 aa8.48□□□□□ -1.05
SYNE3-201ENST00000334258 KRTAP11-1Q8IUC1 163 aa8.47□□□□□ -1.05
SYNE3-201ENST00000334258 IGLV7-46A0A075B6I9 117 aa8.46□□□□□ -1.06
SYNE3-201ENST00000334258 MMP24-AS1A0A0U1RRL7 71 aa8.46□□□□□ -1.06
SYNE3-201ENST00000334258 LINC01554Q52M75 96 aa8.45□□□□□ -1.06
SYNE3-201ENST00000334258 IGLV9-49A0A0B4J1Y8 123 aa8.44□□□□□ -1.06
SYNE3-201ENST00000334258 LOC101927531A0A1B0GV80 90 aa8.44□□□□□ -1.06
SYNE3-201ENST00000334258 STARD9Q9P2P6 4700 aa8.44□□□□□ -1.06
SYNE3-201ENST00000334258 SPINK7P58062 85 aa8.43□□□□□ -1.06
SYNE3-201ENST00000334258 UBE2DNLQ8IWF7 75 aa8.42□□□□□ -1.06
SYNE3-201ENST00000334258 KRTAP1-5Q9BYS1 174 aa8.42□□□□□ -1.06
SYNE3-201ENST00000334258 SPRR1BP22528 89 aa8.41□□□□□ -1.06
SYNE3-201ENST00000334258 IGHV6-1A0A0B4J1U7 121 aa8.4□□□□□ -1.06
SYNE3-201ENST00000334258 KMT2AQ03164 3969 aa8.4□□□□□ -1.07
SYNE3-201ENST00000334258 CDK2AP2O75956 126 aa8.39□□□□□ -1.07
SYNE3-201ENST00000334258 TP53AIP1Q9HCN2 124 aa8.39□□□□□ -1.07
SYNE3-201ENST00000334258 DNAH1Q9P2D7 4330 aa8.38□□□□□ -1.07
SYNE3-201ENST00000334258 C8orf17Q9NRJ1 99 aa8.36□□□□□ -1.07
SYNE3-201ENST00000334258 C14orf177Q52M58 125 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 109 ms