RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 CAMK2N1Q7Z7J9 78 aa9.11□□□□□ -0.95
COL7A1-201ENST00000328333 A0A087WTM6 91 aa9.1□□□□□ -0.95
COL7A1-201ENST00000328333 GIG44P09565 113 aaPredicted RBP9.09□□□□□ -0.95
COL7A1-201ENST00000328333 PCNTO95613 3336 aa9.08□□□□□ -0.96
COL7A1-201ENST00000328333 CFAP54Q96N23 3096 aa9.07□□□□□ -0.96
COL7A1-201ENST00000328333 CSAG1Q6PB30 78 aa9.06□□□□□ -0.96
COL7A1-201ENST00000328333 C19orf73Q9NVV2 129 aa9.05□□□□□ -0.96
COL7A1-201ENST00000328333 TRANK1O15050 2925 aa9.03□□□□□ -0.96
COL7A1-201ENST00000328333 LRBAP50851 2863 aa9.02□□□□□ -0.97
COL7A1-201ENST00000328333 ROMO1P60602 79 aa8.99□□□□□ -0.97
COL7A1-201ENST00000328333 ZNF575Q86XF7 245 aa8.98□□□□□ -0.97
COL7A1-201ENST00000328333 MMP24-AS1A0A0U1RRL7 71 aa8.96□□□□□ -0.97
COL7A1-201ENST00000328333 A0A0G2JQZ4 141 aa8.96□□□□□ -0.97
COL7A1-201ENST00000328333 A0A1W2PNN7 141 aa8.96□□□□□ -0.97
COL7A1-201ENST00000328333 ZCCHC13Q8WW36 166 aaKnown RBP8.96□□□□□ -0.97
COL7A1-201ENST00000328333 SPINK7P58062 85 aa8.96□□□□□ -0.98
COL7A1-201ENST00000328333 S4R3F8 94 aa8.95□□□□□ -0.98
COL7A1-201ENST00000328333 Q6ZSA8 131 aa8.95□□□□□ -0.98
COL7A1-201ENST00000328333 DSPP15924 2871 aaKnown RBP8.95□□□□□ -0.98
COL7A1-201ENST00000328333 CHD9Q3L8U1 2897 aa8.95□□□□□ -0.98
COL7A1-201ENST00000328333 KRTAP24-1Q3LI83 254 aa8.94□□□□□ -0.98
COL7A1-201ENST00000328333 FLNCQ14315 2725 aa8.94□□□□□ -0.98
COL7A1-201ENST00000328333 A0A096LNT2 108 aa8.93□□□□□ -0.98
COL7A1-201ENST00000328333 PRAC1Q96KF2 57 aa8.92□□□□□ -0.98
COL7A1-201ENST00000328333 RPL37P61927 97 aaKnown RBP8.92□□□□□ -0.98
COL7A1-201ENST00000328333 KRTAP16-1A8MUX0 517 aa8.9□□□□□ -0.99
COL7A1-201ENST00000328333 K7EIL1 84 aa8.9□□□□□ -0.99
COL7A1-201ENST00000328333 LINC00472Q9H8W2 130 aa8.89□□□□□ -0.99
COL7A1-201ENST00000328333 KRTAP10-11P60412 298 aa8.89□□□□□ -0.99
COL7A1-201ENST00000328333 ANAPC11Q9NYG5 84 aa8.89□□□□□ -0.99
COL7A1-201ENST00000328333 SPRR1AP35321 89 aa8.88□□□□□ -0.99
COL7A1-201ENST00000328333 Q5W150 140 aa8.87□□□□□ -0.99
COL7A1-201ENST00000328333 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.87□□□□□ -0.99
COL7A1-201ENST00000328333 FRYLO94915 3013 aa8.86□□□□□ -0.99
COL7A1-201ENST00000328333 SPRR1BP22528 89 aa8.85□□□□□ -0.99
COL7A1-201ENST00000328333 CYSTM1Q9H1C7 97 aa8.85□□□□□ -0.99
COL7A1-201ENST00000328333 R4GN34 69 aa8.85□□□□□ -0.99
COL7A1-201ENST00000328333 NIPBLQ6KC79 2804 aaeCLIP8.84□□□□□ -0.99
COL7A1-201ENST00000328333 Q6ZR54 194 aa8.84□□□□□ -0.99
COL7A1-201ENST00000328333 MGAQ8IWI9 3026 aa8.83□□□□□ -1
COL7A1-201ENST00000328333 A0A087X002 238 aa8.81□□□□□ -1
COL7A1-201ENST00000328333 KALRNO60229 2985 aa8.81□□□□□ -1
COL7A1-201ENST00000328333 C5orf42Q9H799 3197 aa8.8□□□□□ -1
COL7A1-201ENST00000328333 LAMA2P24043 3122 aaKnown RBP8.8□□□□□ -1
COL7A1-201ENST00000328333 NF1P21359 2839 aa8.79□□□□□ -1
COL7A1-201ENST00000328333 HIVEP1P15822 2718 aa8.78□□□□□ -1
COL7A1-201ENST00000328333 H1FX-AS1Q4G0G2 97 aa8.77□□□□□ -1.01
COL7A1-201ENST00000328333 FRYQ5TBA9 3013 aa8.76□□□□□ -1.01
COL7A1-201ENST00000328333 GOLGB1Q14789 3259 aaKnown RBP8.76□□□□□ -1.01
COL7A1-201ENST00000328333 PLAC8Q9NZF1 115 aa8.76□□□□□ -1.01
COL7A1-201ENST00000328333 CHD7Q9P2D1 2997 aa8.74□□□□□ -1.01
COL7A1-201ENST00000328333 SPATA8Q6RVD6 105 aa8.73□□□□□ -1.01
COL7A1-201ENST00000328333 OXTP01178 125 aa8.7□□□□□ -1.02
COL7A1-201ENST00000328333 CASC10Q5T4H9 136 aa8.7□□□□□ -1.02
COL7A1-201ENST00000328333 SMR3BP02814 79 aaPredicted RBP8.7□□□□□ -1.02
COL7A1-201ENST00000328333 TENM3Q9P273 2699 aa8.69□□□□□ -1.02
COL7A1-201ENST00000328333 TENM1Q9UKZ4 2725 aa8.68□□□□□ -1.02
COL7A1-201ENST00000328333 ASH1LQ9NR48 2969 aaKnown RBP8.67□□□□□ -1.02
COL7A1-201ENST00000328333 M0R2T5 61 aa8.64□□□□□ -1.03
COL7A1-201ENST00000328333 A6NN06 94 aa8.64□□□□□ -1.03
COL7A1-201ENST00000328333 SEC61BP60468 96 aaKnown RBP8.63□□□□□ -1.03
COL7A1-201ENST00000328333 VPS13AQ96RL7 3174 aa8.63□□□□□ -1.03
COL7A1-201ENST00000328333 PANO1I0J062 215 aa8.62□□□□□ -1.03
COL7A1-201ENST00000328333 KRTAP25-1Q3LHN0 102 aa8.61□□□□□ -1.03
COL7A1-201ENST00000328333 TACC2O95359 2948 aa8.6□□□□□ -1.03
COL7A1-201ENST00000328333 KRTAP26-1Q6PEX3 210 aa8.59□□□□□ -1.03
COL7A1-201ENST00000328333 TRIOO75962 3097 aa8.58□□□□□ -1.04
COL7A1-201ENST00000328333 M0QZ58 72 aa8.58□□□□□ -1.04
COL7A1-201ENST00000328333 CELSR2Q9HCU4 2923 aa8.57□□□□□ -1.04
COL7A1-201ENST00000328333 UTRNP46939 3433 aa8.57□□□□□ -1.04
COL7A1-201ENST00000328333 KRTAP10-3P60369 221 aa8.56□□□□□ -1.04
COL7A1-201ENST00000328333 KRTAP29-1A8MX34 341 aaPredicted RBP8.54□□□□□ -1.04
COL7A1-201ENST00000328333 PDZD2O15018 2839 aa8.54□□□□□ -1.04
COL7A1-201ENST00000328333 LCE6AA0A183 80 aa8.53□□□□□ -1.04
COL7A1-201ENST00000328333 Q8NDZ9 215 aa8.53□□□□□ -1.04
COL7A1-201ENST00000328333 NBEAQ8NFP9 2946 aa8.5□□□□□ -1.05
COL7A1-201ENST00000328333 RPS29P62273 56 aaKnown RBP8.48□□□□□ -1.05
COL7A1-201ENST00000328333 PLAC4Q8WY50 150 aa8.48□□□□□ -1.05
COL7A1-201ENST00000328333 TGP01266 2768 aa8.48□□□□□ -1.05
COL7A1-201ENST00000328333 KRTAP4-16G5E9R7 235 aaPredicted RBP8.47□□□□□ -1.05
COL7A1-201ENST00000328333 ADM2Q7Z4H4 148 aa8.43□□□□□ -1.06
COL7A1-201ENST00000328333 ZZEF1O43149 2961 aa8.41□□□□□ -1.06
COL7A1-201ENST00000328333 TNRC18O15417 2968 aaPredicted RBP8.4□□□□□ -1.06
COL7A1-201ENST00000328333 KRTAP1-3Q8IUG1 177 aa8.4□□□□□ -1.06
COL7A1-201ENST00000328333 CRYBG3Q68DQ2 2970 aa8.39□□□□□ -1.07
COL7A1-201ENST00000328333 NDUFAF8A1L188 74 aa8.38□□□□□ -1.07
COL7A1-201ENST00000328333 KRTAP1-1Q07627 177 aa8.38□□□□□ -1.07
COL7A1-201ENST00000328333 PRUNE2Q8WUY3 3088 aa8.36□□□□□ -1.07
COL7A1-201ENST00000328333 ZANQ9Y493 2812 aa8.36□□□□□ -1.07
COL7A1-201ENST00000328333 COL12A1Q99715 3063 aa8.35□□□□□ -1.07
COL7A1-201ENST00000328333 PP632Q6XCG6 107 aa8.33□□□□□ -1.08
COL7A1-201ENST00000328333 DMXL2Q8TDJ6 3036 aa8.33□□□□□ -1.08
COL7A1-201ENST00000328333 DCHS2Q6V1P9 2916 aa8.3□□□□□ -1.08
COL7A1-201ENST00000328333 C20orf166-AS1Q96NR2 134 aa8.28□□□□□ -1.08
COL7A1-201ENST00000328333 WDFY4Q6ZS81 3184 aa8.27□□□□□ -1.09
COL7A1-201ENST00000328333 SRRM2Q9UQ35 2752 aaKnown RBP8.24□□□□□ -1.09
COL7A1-201ENST00000328333 Q5VSD8 79 aa8.2□□□□□ -1.1
COL7A1-201ENST00000328333 KRTAP1-5Q9BYS1 174 aa8.2□□□□□ -1.1
COL7A1-201ENST00000328333 A8MUU9 505 aa8.2□□□□□ -1.1
COL7A1-201ENST00000328333 KRTAP11-1Q8IUC1 163 aa8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 72.2 ms