RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 IGKV3D-7A0A0C4DH55 119 aa11.41□□□□□ -0.58
USP39-201ENST00000323701 JMJD7-PLA2G4BH0Y9G9 81 aa11.4□□□□□ -0.58
USP39-201ENST00000323701 LRP1BQ9NZR2 4599 aa11.39□□□□□ -0.59
USP39-201ENST00000323701 HIGD2AQ9BW72 106 aa11.38□□□□□ -0.59
USP39-201ENST00000323701 RBM3P98179 157 aaKnown RBP11.38□□□□□ -0.59
USP39-201ENST00000323701 KRTAP10-1P60331 282 aa11.37□□□□□ -0.59
USP39-201ENST00000323701 SERP2Q8N6R1 65 aa11.37□□□□□ -0.59
USP39-201ENST00000323701 IGLV5-48A0A075B6I7 105 aa11.36□□□□□ -0.59
USP39-201ENST00000323701 HAMPP81172 84 aa11.36□□□□□ -0.59
USP39-201ENST00000323701 H3BQ85 93 aa11.35□□□□□ -0.59
USP39-201ENST00000323701 TMEM258P61165 79 aa11.34□□□□□ -0.59
USP39-201ENST00000323701 Q6ZQT0 140 aa11.34□□□□□ -0.59
USP39-201ENST00000323701 KRTAP13-1Q8IUC0 172 aa11.34□□□□□ -0.59
USP39-201ENST00000323701 BCE1O60756 84 aa11.34□□□□□ -0.59
USP39-201ENST00000323701 A0A087WVE0 104 aa11.33□□□□□ -0.6
USP39-201ENST00000323701 C5orf47Q569G3 176 aa11.33□□□□□ -0.6
USP39-201ENST00000323701 CYSTM1Q9H1C7 97 aa11.33□□□□□ -0.6
USP39-201ENST00000323701 PSORS1C2Q9UIG4 136 aa11.33□□□□□ -0.6
USP39-201ENST00000323701 CIRBP-AS1Q8TBR5 109 aa11.33□□□□□ -0.6
USP39-201ENST00000323701 H0Y9J4 135 aa11.32□□□□□ -0.6
USP39-201ENST00000323701 GHRHP01286 108 aa11.32□□□□□ -0.6
USP39-201ENST00000323701 UBE2AP49459 152 aa11.32□□□□□ -0.6
USP39-201ENST00000323701 LOC110117498A0A087WWA1 95 aa11.31□□□□□ -0.6
USP39-201ENST00000323701 TRBV7-4A0A0J9YYF1 115 aa11.31□□□□□ -0.6
USP39-201ENST00000323701 SMIM29Q86T20 159 aa11.31□□□□□ -0.6
USP39-201ENST00000323701 DSCR8Q96T75 97 aa11.3□□□□□ -0.6
USP39-201ENST00000323701 Q6ZSA8 131 aa11.3□□□□□ -0.6
USP39-201ENST00000323701 SCXQ7RTU7 201 aa11.29□□□□□ -0.6
USP39-201ENST00000323701 DYNC1H1Q14204 4646 aaKnown RBP11.28□□□□□ -0.6
USP39-201ENST00000323701 RYR3Q15413 4870 aa11.27□□□□□ -0.61
USP39-201ENST00000323701 ATP5EP2Q5VTU8 51 aa11.26□□□□□ -0.61
USP39-201ENST00000323701 C1orf137Q5JT78 98 aa11.26□□□□□ -0.61
USP39-201ENST00000323701 VPS13BQ7Z7G8 4022 aa11.24□□□□□ -0.61
USP39-201ENST00000323701 A0A0G2JQZ4 141 aa11.24□□□□□ -0.61
USP39-201ENST00000323701 UBL5Q9BZL1 73 aa11.21□□□□□ -0.61
USP39-201ENST00000323701 A0A1B0GVY2 172 aa11.2□□□□□ -0.62
USP39-201ENST00000323701 PDE6GP18545 87 aa11.2□□□□□ -0.62
USP39-201ENST00000323701 LINC00336Q6ZUF6 198 aa11.19□□□□□ -0.62
USP39-201ENST00000323701 A0A1W2PNM2 257 aa11.17□□□□□ -0.62
USP39-201ENST00000323701 OXTP01178 125 aa11.17□□□□□ -0.62
USP39-201ENST00000323701 SPRR1BP22528 89 aa11.17□□□□□ -0.62
USP39-201ENST00000323701 ZNF861PO60384 105 aa11.16□□□□□ -0.62
USP39-201ENST00000323701 Q6ZVQ6 151 aa11.16□□□□□ -0.62
USP39-201ENST00000323701 APOBP04114 4563 aaKnown RBP11.15□□□□□ -0.62
USP39-201ENST00000323701 IGLV7-43P04211 117 aa11.14□□□□□ -0.63
USP39-201ENST00000323701 SPRR4Q96PI1 79 aa11.14□□□□□ -0.63
USP39-201ENST00000323701 ANAPC11Q9NYG5 84 aa11.14□□□□□ -0.63
USP39-201ENST00000323701 IGFL1Q6UW32 110 aa11.13□□□□□ -0.63
USP39-201ENST00000323701 F8WEM9 126 aa11.11□□□□□ -0.63
USP39-201ENST00000323701 IGLV8-61A0A075B6I0 122 aa11.11□□□□□ -0.63
USP39-201ENST00000323701 Q5XG85 94 aa11.1□□□□□ -0.63
USP39-201ENST00000323701 Q8NBF4 154 aa11.09□□□□□ -0.63
USP39-201ENST00000323701 LINC00483Q53H64 154 aa11.08□□□□□ -0.64
USP39-201ENST00000323701 FAT1Q14517 4588 aa11.08□□□□□ -0.64
USP39-201ENST00000323701 C4orf26Q17RF5 130 aa11.07□□□□□ -0.64
USP39-201ENST00000323701 C20orf197Q8N268 126 aa11.07□□□□□ -0.64
USP39-201ENST00000323701 TRAV7A0A075B6U4 112 aa11.05□□□□□ -0.64
USP39-201ENST00000323701 IGLV9-49A0A0B4J1Y8 123 aa11.05□□□□□ -0.64
USP39-201ENST00000323701 FAM236DA0A1B0GTK5 79 aa11.05□□□□□ -0.64
USP39-201ENST00000323701 FAM236CP0DP71 79 aa11.05□□□□□ -0.64
USP39-201ENST00000323701 CXCL6P80162 114 aa11.03□□□□□ -0.64
USP39-201ENST00000323701 HRCT1Q6UXD1 115 aa11.02□□□□□ -0.65
USP39-201ENST00000323701 ZNF706Q9Y5V0 76 aaPredicted RBP11.01□□□□□ -0.65
USP39-201ENST00000323701 H7BZZ5 65 aa11.01□□□□□ -0.65
USP39-201ENST00000323701 SERP1Q9Y6X1 66 aa11□□□□□ -0.65
USP39-201ENST00000323701 KLKP1Q107X0 134 aa10.99□□□□□ -0.65
USP39-201ENST00000323701 SMR3BP02814 79 aaPredicted RBP10.99□□□□□ -0.65
USP39-201ENST00000323701 NREPQ16612 68 aa10.98□□□□□ -0.65
USP39-201ENST00000323701 MOBPQ13875 183 aa10.96□□□□□ -0.65
USP39-201ENST00000323701 A0A087WSZ3 146 aa10.96□□□□□ -0.66
USP39-201ENST00000323701 A0A1B0GW54 56 aa10.94□□□□□ -0.66
USP39-201ENST00000323701 Q8N9L7 120 aa10.93□□□□□ -0.66
USP39-201ENST00000323701 A0A087X002 238 aa10.91□□□□□ -0.66
USP39-201ENST00000323701 DEFB116Q30KQ4 102 aa10.9□□□□□ -0.66
USP39-201ENST00000323701 KRTAP1-4P0C5Y4 121 aa10.89□□□□□ -0.67
USP39-201ENST00000323701 SNURFQ9Y675 71 aa10.89□□□□□ -0.67
USP39-201ENST00000323701 NDUFC1O43677 76 aa10.89□□□□□ -0.67
USP39-201ENST00000323701 IGKV4-1P06312 121 aa10.89□□□□□ -0.67
USP39-201ENST00000323701 RPL37AP61513 92 aaKnown RBP10.89□□□□□ -0.67
USP39-201ENST00000323701 HSPG2P98160 4391 aa10.89□□□□□ -0.67
USP39-201ENST00000323701 BPY2O14599 106 aa10.87□□□□□ -0.67
USP39-201ENST00000323701 KRTAP13-2Q52LG2 175 aa10.87□□□□□ -0.67
USP39-201ENST00000323701 KRTAP10-4P60372 401 aaPredicted RBP10.86□□□□□ -0.67
USP39-201ENST00000323701 EPPK1P58107 5090 aaKnown RBP10.86□□□□□ -0.67
USP39-201ENST00000323701 SMIM26A0A096LP01 95 aa10.86□□□□□ -0.67
USP39-201ENST00000323701 ATP5EP56381 51 aaPredicted RBP10.84□□□□□ -0.67
USP39-201ENST00000323701 DSCR10P59022 87 aa10.84□□□□□ -0.67
USP39-201ENST00000323701 PRO0628Q9UI54 55 aa10.82□□□□□ -0.68
USP39-201ENST00000323701 RYR1P21817 5038 aa10.81□□□□□ -0.68
USP39-201ENST00000323701 FP248Q71RG6 208 aaPredicted RBP10.8□□□□□ -0.68
USP39-201ENST00000323701 LINC00472Q9H8W2 130 aa10.79□□□□□ -0.68
USP39-201ENST00000323701 KIAA1109Q2LD37 5005 aa10.79□□□□□ -0.68
USP39-201ENST00000323701 K7EQZ3 153 aa10.78□□□□□ -0.68
USP39-201ENST00000323701 PLA2G1BP04054 148 aaKnown RBP10.77□□□□□ -0.69
USP39-201ENST00000323701 FAM229BQ4G0N7 80 aa10.77□□□□□ -0.69
USP39-201ENST00000323701 SPINK6Q6UWN8 80 aa10.77□□□□□ -0.69
USP39-201ENST00000323701 Q96NJ1 140 aa10.77□□□□□ -0.69
USP39-201ENST00000323701 TMEM254Q8TBM7 123 aa10.76□□□□□ -0.69
USP39-201ENST00000323701 SSBP3-AS1Q7Z2R9 100 aa10.75□□□□□ -0.69
USP39-201ENST00000323701 OCR1Q9BZK8 76 aa10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms