RNA–Protein interactions for RNA: ENST00000316433.8

ZNF540-201, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene ZNF540, Length 3,099 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-201ENST00000316433 ZNF861PO60384 105 aa4.09□□□□□ -1.75
ZNF540-201ENST00000316433 NBPF19A0A087WUL8 3843 aa4.09□□□□□ -1.76
ZNF540-201ENST00000316433 PDZD2O15018 2839 aa4.09□□□□□ -1.76
ZNF540-201ENST00000316433 IGKV2-24A0A0C4DH68 120 aa4.08□□□□□ -1.76
ZNF540-201ENST00000316433 A0A1B0GU69 56 aa4.08□□□□□ -1.76
ZNF540-201ENST00000316433 CSPG4Q6UVK1 2322 aa4.08□□□□□ -1.76
ZNF540-201ENST00000316433 CREBBPQ92793 2442 aa4.08□□□□□ -1.76
ZNF540-201ENST00000316433 CMYA5Q8N3K9 4069 aa4.08□□□□□ -1.76
ZNF540-201ENST00000316433 PKD1L2Q7Z442 2459 aa4.08□□□□□ -1.76
ZNF540-201ENST00000316433 NOTCH3Q9UM47 2321 aa4.08□□□□□ -1.76
ZNF540-201ENST00000316433 A0A0G2JQZ4 141 aa4.08□□□□□ -1.76
ZNF540-201ENST00000316433 A0A1W2PNN7 141 aa4.08□□□□□ -1.76
ZNF540-201ENST00000316433 UQCR11O14957 56 aa4.08□□□□□ -1.76
ZNF540-201ENST00000316433 P0C880 135 aa4.08□□□□□ -1.76
ZNF540-201ENST00000316433 KRTAP25-1Q3LHN0 102 aa4.08□□□□□ -1.76
ZNF540-201ENST00000316433 IGFL1Q6UW32 110 aa4.08□□□□□ -1.76
ZNF540-201ENST00000316433 KMT2BQ9UMN6 2715 aaPredicted RBP4.07□□□□□ -1.76
ZNF540-201ENST00000316433 ZANQ9Y493 2812 aa4.07□□□□□ -1.76
ZNF540-201ENST00000316433 DEFB135Q30KP9 77 aa4.07□□□□□ -1.76
ZNF540-201ENST00000316433 NOTCH2NLQ7Z3S9 236 aa4.07□□□□□ -1.76
ZNF540-201ENST00000316433 TP53AIP1Q9HCN2 124 aa4.07□□□□□ -1.76
ZNF540-201ENST00000316433 USP9XQ93008 2570 aaPredicted RBP4.07□□□□□ -1.76
ZNF540-201ENST00000316433 KRTAP7-1Q8IUC3 87 aa4.06□□□□□ -1.76
ZNF540-201ENST00000316433 MMP24-AS1A0A0U1RRL7 71 aa4.06□□□□□ -1.76
ZNF540-201ENST00000316433 POLQO75417 2590 aa4.05□□□□□ -1.76
ZNF540-201ENST00000316433 IGSF10Q6WRI0 2623 aa4.05□□□□□ -1.76
ZNF540-201ENST00000316433 SETXQ7Z333 2677 aaKnown RBP4.04□□□□□ -1.76
ZNF540-201ENST00000316433 DNAH6Q9C0G6 4158 aa4.04□□□□□ -1.76
ZNF540-201ENST00000316433 PIEZO1Q92508 2521 aa4.04□□□□□ -1.76
ZNF540-201ENST00000316433 INAFM1C9JVW0 142 aa4.03□□□□□ -1.76
ZNF540-201ENST00000316433 OTOGQ6ZRI0 2925 aa4.03□□□□□ -1.76
ZNF540-201ENST00000316433 USP9YO00507 2555 aaPredicted RBP4.03□□□□□ -1.76
ZNF540-201ENST00000316433 C14orf177Q52M58 125 aa4.03□□□□□ -1.76
ZNF540-201ENST00000316433 KRTAP13-1Q8IUC0 172 aa4.03□□□□□ -1.76
ZNF540-201ENST00000316433 CENPEQ02224 2701 aa4.03□□□□□ -1.76
ZNF540-201ENST00000316433 J3QKU1 62 aa4.03□□□□□ -1.76
ZNF540-201ENST00000316433 ACYP2P14621 99 aa4.03□□□□□ -1.76
ZNF540-201ENST00000316433 LINC00483Q53H64 154 aa4.03□□□□□ -1.76
ZNF540-201ENST00000316433 LINC00472Q9H8W2 130 aa4.02□□□□□ -1.77
ZNF540-201ENST00000316433 MYO18BQ8IUG5 2567 aa4.02□□□□□ -1.77
ZNF540-201ENST00000316433 ALMS1Q8TCU4 4167 aa4.01□□□□□ -1.77
ZNF540-201ENST00000316433 IGLV5-52A0A0A0MRZ9 124 aa4□□□□□ -1.77
ZNF540-201ENST00000316433 FAM168BA1KXE4 195 aa4□□□□□ -1.77
ZNF540-201ENST00000316433 SEC61BP60468 96 aaKnown RBP4□□□□□ -1.77
ZNF540-201ENST00000316433 TEX15Q9BXT5 2789 aa3.99□□□□□ -1.77
ZNF540-201ENST00000316433 ZFYVE26Q68DK2 2539 aa3.99□□□□□ -1.77
ZNF540-201ENST00000316433 A8MUU9 505 aa3.99□□□□□ -1.77
ZNF540-201ENST00000316433 FAM208BQ5VWN6 2430 aa3.99□□□□□ -1.77
ZNF540-201ENST00000316433 APCP25054 2843 aa3.99□□□□□ -1.77
ZNF540-201ENST00000316433 ITPR3Q14573 2671 aa3.98□□□□□ -1.77
ZNF540-201ENST00000316433 ACACBO00763 2458 aa3.98□□□□□ -1.77
ZNF540-201ENST00000316433 ABCA12Q86UK0 2595 aa3.98□□□□□ -1.77
ZNF540-201ENST00000316433 KRTAP16-1A8MUX0 517 aa3.98□□□□□ -1.77
ZNF540-201ENST00000316433 KRTAP10-11P60412 298 aa3.98□□□□□ -1.77
ZNF540-201ENST00000316433 ZNF469Q96JG9 3925 aaPredicted RBP3.98□□□□□ -1.77
ZNF540-201ENST00000316433 DNAH17Q9UFH2 4485 aa3.98□□□□□ -1.77
ZNF540-201ENST00000316433 ZNF462Q96JM2 2506 aa3.98□□□□□ -1.77
ZNF540-201ENST00000316433 PRKDCP78527 4128 aaKnown RBP3.98□□□□□ -1.77
ZNF540-201ENST00000316433 DMAC1Q96GE9 116 aa3.97□□□□□ -1.77
ZNF540-201ENST00000316433 LRRK2Q5S007 2527 aa3.97□□□□□ -1.77
ZNF540-201ENST00000316433 PTPN13Q12923 2485 aa3.97□□□□□ -1.77
ZNF540-201ENST00000316433 CUBNO60494 3623 aa3.97□□□□□ -1.77
ZNF540-201ENST00000316433 VPS13DQ5THJ4 4388 aa3.96□□□□□ -1.78
ZNF540-201ENST00000316433 MYO9AB2RTY4 2548 aa3.96□□□□□ -1.78
ZNF540-201ENST00000316433 EPG5Q9HCE0 2579 aa3.96□□□□□ -1.78
ZNF540-201ENST00000316433 NAV2Q8IVL1 2488 aa3.95□□□□□ -1.78
ZNF540-201ENST00000316433 TLN2Q9Y4G6 2542 aa3.95□□□□□ -1.78
ZNF540-201ENST00000316433 NIPBLQ6KC79 2804 aaeCLIP3.95□□□□□ -1.78
ZNF540-201ENST00000316433 C8orf17Q9NRJ1 99 aa3.95□□□□□ -1.78
ZNF540-201ENST00000316433 USP24Q9UPU5 2620 aa3.95□□□□□ -1.78
ZNF540-201ENST00000316433 NF1P21359 2839 aa3.94□□□□□ -1.78
ZNF540-201ENST00000316433 SONP18583 2426 aaKnown RBP3.94□□□□□ -1.78
ZNF540-201ENST00000316433 Q96NJ1 140 aa3.94□□□□□ -1.78
ZNF540-201ENST00000316433 DNAH10Q8IVF4 4471 aa3.94□□□□□ -1.78
ZNF540-201ENST00000316433 CDK2AP2O75956 126 aa3.93□□□□□ -1.78
ZNF540-201ENST00000316433 HUWE1Q7Z6Z7 4374 aaKnown RBP3.93□□□□□ -1.78
ZNF540-201ENST00000316433 NDUFAF8A1L188 74 aa3.93□□□□□ -1.78
ZNF540-201ENST00000316433 IGLV7-43P04211 117 aa3.93□□□□□ -1.78
ZNF540-201ENST00000316433 C20orf166-AS1Q96NR2 134 aa3.93□□□□□ -1.78
ZNF540-201ENST00000316433 DEFB4AO15263 64 aa3.93□□□□□ -1.78
ZNF540-201ENST00000316433 LINC00304Q8N9R0 145 aa3.93□□□□□ -1.78
ZNF540-201ENST00000316433 CASC10Q5T4H9 136 aa3.92□□□□□ -1.78
ZNF540-201ENST00000316433 LCE2BO14633 110 aa3.92□□□□□ -1.78
ZNF540-201ENST00000316433 KRTAP13-3Q3SY46 172 aa3.92□□□□□ -1.78
ZNF540-201ENST00000316433 MRPL34Q9BQ48 92 aaKnown RBP3.92□□□□□ -1.78
ZNF540-201ENST00000316433 SETD2Q9BYW2 2564 aaPredicted RBP3.91□□□□□ -1.78
ZNF540-201ENST00000316433 JMJD1CQ15652 2540 aa3.91□□□□□ -1.78
ZNF540-201ENST00000316433 K7EIL1 84 aa3.91□□□□□ -1.78
ZNF540-201ENST00000316433 CHTF8P0CG12 524 aa3.91□□□□□ -1.78
ZNF540-201ENST00000316433 DNAH7Q8WXX0 4024 aa3.9□□□□□ -1.78
ZNF540-201ENST00000316433 TENM2Q9NT68 2774 aa3.9□□□□□ -1.78
ZNF540-201ENST00000316433 HTN3P15516 51 aa3.9□□□□□ -1.79
ZNF540-201ENST00000316433 DNAH8Q96JB1 4490 aa3.9□□□□□ -1.79
ZNF540-201ENST00000316433 CCDC168Q8NDH2 2452 aa3.9□□□□□ -1.79
ZNF540-201ENST00000316433 FLNAP21333 2647 aaKnown RBP3.89□□□□□ -1.79
ZNF540-201ENST00000316433 Q6ZRN7 208 aaPredicted RBP3.89□□□□□ -1.79
ZNF540-201ENST00000316433 A0A096LNI7 61 aa3.89□□□□□ -1.79
ZNF540-201ENST00000316433 PRLHP81277 87 aa3.89□□□□□ -1.79
ZNF540-201ENST00000316433 A0A1B0GVX0 72 aa3.89□□□□□ -1.79
ZNF540-201ENST00000316433 APLNQ9ULZ1 77 aa3.89□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms