RNA–Protein interactions for RNA: ENST00000311943.11

SCFD1-201, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 2,016 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-201ENST00000311943 VAMP3Q15836 100 aa6.76□□□□□ -1.33
SCFD1-201ENST00000311943 UQCR10Q9UDW1 63 aa6.76□□□□□ -1.33
SCFD1-201ENST00000311943 PRO1854Q9UHT4 67 aa6.76□□□□□ -1.33
SCFD1-201ENST00000311943 LOC105371267A0A1B0GV96 52 aa6.75□□□□□ -1.33
SCFD1-201ENST00000311943 TRIAP1O43715 76 aa6.75□□□□□ -1.33
SCFD1-201ENST00000311943 HSD52Q0P140 79 aa6.75□□□□□ -1.33
SCFD1-201ENST00000311943 CLEC2BQ92478 149 aa6.75□□□□□ -1.33
SCFD1-201ENST00000311943 C21orf62-AS1Q17RA5 79 aa6.74□□□□□ -1.33
SCFD1-201ENST00000311943 SLC25A20O43772 301 aa6.74□□□□□ -1.33
SCFD1-201ENST00000311943 H3BUT2 72 aa6.72□□□□□ -1.33
SCFD1-201ENST00000311943 BVES-AS1Q5T3Y7 98 aa6.72□□□□□ -1.33
SCFD1-201ENST00000311943 CTAG1AP78358 180 aa6.71□□□□□ -1.34
SCFD1-201ENST00000311943 KRTAP13-3Q3SY46 172 aa6.71□□□□□ -1.34
SCFD1-201ENST00000311943 NAA38Q9BRA0 125 aaKnown RBP6.71□□□□□ -1.34
SCFD1-201ENST00000311943 CDIP1Q9H305 208 aa6.71□□□□□ -1.34
SCFD1-201ENST00000311943 A0A1B0GV72 72 aa6.69□□□□□ -1.34
SCFD1-201ENST00000311943 TPRXLQ17RH7 258 aa6.69□□□□□ -1.34
SCFD1-201ENST00000311943 IGFL1Q6UW32 110 aa6.69□□□□□ -1.34
SCFD1-201ENST00000311943 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6.69□□□□□ -1.34
SCFD1-201ENST00000311943 MUC17Q685J3 4493 aa6.67□□□□□ -1.34
SCFD1-201ENST00000311943 PSMB2P49721 201 aa6.67□□□□□ -1.34
SCFD1-201ENST00000311943 RPS29P62273 56 aaKnown RBP6.67□□□□□ -1.34
SCFD1-201ENST00000311943 LCE2BO14633 110 aa6.66□□□□□ -1.34
SCFD1-201ENST00000311943 SMIM6P0DI80 62 aa6.66□□□□□ -1.34
SCFD1-201ENST00000311943 OCIAD2Q56VL3 154 aa6.66□□□□□ -1.34
SCFD1-201ENST00000311943 C9orf92A6NGG3 77 aa6.66□□□□□ -1.34
SCFD1-201ENST00000311943 H0YGX0 51 aa6.66□□□□□ -1.34
SCFD1-201ENST00000311943 SNHG12Q9BXW3 62 aa6.66□□□□□ -1.34
SCFD1-201ENST00000311943 FP248Q71RG6 208 aaPredicted RBP6.65□□□□□ -1.35
SCFD1-201ENST00000311943 C1orf195Q5TG92 126 aa6.64□□□□□ -1.35
SCFD1-201ENST00000311943 F8WEM9 126 aa6.64□□□□□ -1.35
SCFD1-201ENST00000311943 FABP2P12104 132 aa6.64□□□□□ -1.35
SCFD1-201ENST00000311943 KRTAP4-1Q9BYQ7 146 aa6.64□□□□□ -1.35
SCFD1-201ENST00000311943 NDUFV3P56181 108 aaKnown RBP6.63□□□□□ -1.35
SCFD1-201ENST00000311943 IGLV8-61A0A075B6I0 122 aa6.62□□□□□ -1.35
SCFD1-201ENST00000311943 FAT4Q6V0I7 4981 aa6.62□□□□□ -1.35
SCFD1-201ENST00000311943 CD164Q04900 197 aa6.61□□□□□ -1.35
SCFD1-201ENST00000311943 BATFQ16520 125 aa6.6□□□□□ -1.35
SCFD1-201ENST00000311943 XP32Q5T750 250 aa6.6□□□□□ -1.35
SCFD1-201ENST00000311943 LIMD2Q9BT23 127 aa6.6□□□□□ -1.35
SCFD1-201ENST00000311943 H3BMG7 143 aa6.59□□□□□ -1.35
SCFD1-201ENST00000311943 TRBV7-7A0A0K0K1E9 115 aa6.59□□□□□ -1.36
SCFD1-201ENST00000311943 SCGB1C2P0DMR2 95 aa6.57□□□□□ -1.36
SCFD1-201ENST00000311943 Q5XG85 94 aa6.57□□□□□ -1.36
SCFD1-201ENST00000311943 Q6JHZ5 121 aa6.57□□□□□ -1.36
SCFD1-201ENST00000311943 A0A1W2PNM2 257 aa6.56□□□□□ -1.36
SCFD1-201ENST00000311943 PPDPFLQ8WWR9 84 aa6.56□□□□□ -1.36
SCFD1-201ENST00000311943 A0A1B0GX51 115 aa6.55□□□□□ -1.36
SCFD1-201ENST00000311943 LST1O00453 97 aa6.55□□□□□ -1.36
SCFD1-201ENST00000311943 ORMDL1Q9P0S3 153 aa6.55□□□□□ -1.36
SCFD1-201ENST00000311943 TCL1BO95988 128 aa6.55□□□□□ -1.36
SCFD1-201ENST00000311943 DNAL4O96015 105 aa6.55□□□□□ -1.36
SCFD1-201ENST00000311943 COX6CP09669 75 aa6.55□□□□□ -1.36
SCFD1-201ENST00000311943 TSTD3H0UI37 97 aa6.54□□□□□ -1.36
SCFD1-201ENST00000311943 A0A087WSZ3 146 aa6.54□□□□□ -1.36
SCFD1-201ENST00000311943 M0R143 59 aa6.54□□□□□ -1.36
SCFD1-201ENST00000311943 SNCGO76070 127 aa6.53□□□□□ -1.36
SCFD1-201ENST00000311943 ASB16-AS1Q495Z4 193 aa6.52□□□□□ -1.37
SCFD1-201ENST00000311943 TRACP01848 142 aa6.5□□□□□ -1.37
SCFD1-201ENST00000311943 DEFB116Q30KQ4 102 aa6.5□□□□□ -1.37
SCFD1-201ENST00000311943 Q96NJ1 140 aa6.5□□□□□ -1.37
SCFD1-201ENST00000311943 PCOTHQ58A44 107 aa6.5□□□□□ -1.37
SCFD1-201ENST00000311943 MTURNQ8N3F0 131 aa6.5□□□□□ -1.37
SCFD1-201ENST00000311943 BAALC-AS2P0C853 105 aa6.49□□□□□ -1.37
SCFD1-201ENST00000311943 TEN1Q86WV5 123 aa6.49□□□□□ -1.37
SCFD1-201ENST00000311943 TMEM256-PLSCR3K7ERE1 68 aa6.49□□□□□ -1.37
SCFD1-201ENST00000311943 TAX1BP3O14907 124 aa6.49□□□□□ -1.37
SCFD1-201ENST00000311943 ANKRD29Q8N6D5 301 aa6.49□□□□□ -1.37
SCFD1-201ENST00000311943 Q6Q795 121 aa6.47□□□□□ -1.37
SCFD1-201ENST00000311943 OBSCN-AS1Q96MR7 158 aa6.47□□□□□ -1.37
SCFD1-201ENST00000311943 VPS25Q9BRG1 176 aa6.47□□□□□ -1.37
SCFD1-201ENST00000311943 LCE2CQ5TA81 110 aa6.46□□□□□ -1.38
SCFD1-201ENST00000311943 CCKP06307 115 aa6.45□□□□□ -1.38
SCFD1-201ENST00000311943 UBE2V1Q13404 147 aa6.45□□□□□ -1.38
SCFD1-201ENST00000311943 TRBV7-4A0A0J9YYF1 115 aa6.44□□□□□ -1.38
SCFD1-201ENST00000311943 SEC61BP60468 96 aaKnown RBP6.44□□□□□ -1.38
SCFD1-201ENST00000311943 ATXN8Q156A1 80 aa6.44□□□□□ -1.38
SCFD1-201ENST00000311943 C9JAW5 83 aa6.43□□□□□ -1.38
SCFD1-201ENST00000311943 NOTCH2NLQ7Z3S9 236 aa6.43□□□□□ -1.38
SCFD1-201ENST00000311943 C9orf118A6NHY6 69 aa6.42□□□□□ -1.38
SCFD1-201ENST00000311943 DSCR10P59022 87 aa6.42□□□□□ -1.38
SCFD1-201ENST00000311943 RBM3P98179 157 aaKnown RBP6.42□□□□□ -1.38
SCFD1-201ENST00000311943 PCP4L1A6NKN8 68 aa6.41□□□□□ -1.38
SCFD1-201ENST00000311943 RPL37P61927 97 aaKnown RBP6.41□□□□□ -1.38
SCFD1-201ENST00000311943 LCE2AQ5TA79 106 aaPredicted RBP6.41□□□□□ -1.38
SCFD1-201ENST00000311943 A0A1W2PPM0 123 aa6.4□□□□□ -1.39
SCFD1-201ENST00000311943 KRTAP19-2Q3LHN2 52 aa6.4□□□□□ -1.39
SCFD1-201ENST00000311943 C14orf132Q9NPU4 83 aa6.4□□□□□ -1.39
SCFD1-201ENST00000311943 IGKV4-1P06312 121 aa6.38□□□□□ -1.39
SCFD1-201ENST00000311943 SIGMAR1Q99720 223 aa6.38□□□□□ -1.39
SCFD1-201ENST00000311943 LINC00472Q9H8W2 130 aa6.38□□□□□ -1.39
SCFD1-201ENST00000311943 SS18L2Q9UHA2 77 aa6.38□□□□□ -1.39
SCFD1-201ENST00000311943 DSCR8Q96T75 97 aa6.38□□□□□ -1.39
SCFD1-201ENST00000311943 Q6ZQT0 140 aa6.37□□□□□ -1.39
SCFD1-201ENST00000311943 H3BQ85 93 aa6.36□□□□□ -1.39
SCFD1-201ENST00000311943 TRBV20-1A0A075B6N2 111 aa6.34□□□□□ -1.39
SCFD1-201ENST00000311943 KRTAP16-1A8MUX0 517 aa6.33□□□□□ -1.4
SCFD1-201ENST00000311943 SPCS1Q9Y6A9 102 aa6.33□□□□□ -1.4
SCFD1-201ENST00000311943 IGHV6-1A0A0B4J1U7 121 aa6.32□□□□□ -1.4
SCFD1-201ENST00000311943 LOC110117498A0A087WWA1 95 aa6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 75.3 ms