RNA–Protein interactions for RNA: ENST00000309469.8

ATG4D-201, Transcript of autophagy related 4D cysteine peptidase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ATG4D, Length 1,949 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-201ENST00000309469 HAMPP81172 84 aa13.11□□□□□ -0.31
ATG4D-201ENST00000309469 F8WEM9 126 aa13.09□□□□□ -0.31
ATG4D-201ENST00000309469 ATOX1O00244 68 aa13.09□□□□□ -0.31
ATG4D-201ENST00000309469 SPRR1BP22528 89 aa13.08□□□□□ -0.32
ATG4D-201ENST00000309469 A0A1W2PNM2 257 aa13.07□□□□□ -0.32
ATG4D-201ENST00000309469 CXCL6P80162 114 aa13.07□□□□□ -0.32
ATG4D-201ENST00000309469 PSORS1C2Q9UIG4 136 aa13.06□□□□□ -0.32
ATG4D-201ENST00000309469 A0A1B0GW54 56 aa13.04□□□□□ -0.32
ATG4D-201ENST00000309469 COX7CP15954 63 aa13.04□□□□□ -0.32
ATG4D-201ENST00000309469 Q8NBF4 154 aa13.04□□□□□ -0.32
ATG4D-201ENST00000309469 FRAS1Q86XX4 4008 aa13.03□□□□□ -0.32
ATG4D-201ENST00000309469 IGLV8-61A0A075B6I0 122 aa13.03□□□□□ -0.32
ATG4D-201ENST00000309469 DNAH11Q96DT5 4516 aa13.01□□□□□ -0.33
ATG4D-201ENST00000309469 NREPQ16612 68 aa13.01□□□□□ -0.33
ATG4D-201ENST00000309469 C9orf153Q5TBE3 101 aa13.01□□□□□ -0.33
ATG4D-201ENST00000309469 FAM30AQ9NZY2 134 aa13.01□□□□□ -0.33
ATG4D-201ENST00000309469 SPRR4Q96PI1 79 aa13□□□□□ -0.33
ATG4D-201ENST00000309469 HYDINQ4G0P3 5121 aa13□□□□□ -0.33
ATG4D-201ENST00000309469 IGFL1Q6UW32 110 aa13□□□□□ -0.33
ATG4D-201ENST00000309469 CRYGAP11844 174 aa12.99□□□□□ -0.33
ATG4D-201ENST00000309469 SCXQ7RTU7 201 aa12.98□□□□□ -0.33
ATG4D-201ENST00000309469 DNAH8Q96JB1 4490 aa12.97□□□□□ -0.33
ATG4D-201ENST00000309469 CIRBP-AS1Q8TBR5 109 aa12.97□□□□□ -0.33
ATG4D-201ENST00000309469 A0A0G2JQZ4 141 aa12.96□□□□□ -0.33
ATG4D-201ENST00000309469 KRTAP10-1P60331 282 aa12.96□□□□□ -0.33
ATG4D-201ENST00000309469 SRRM2Q9UQ35 2752 aaKnown RBP12.95□□□□□ -0.34
ATG4D-201ENST00000309469 ZNF861PO60384 105 aa12.95□□□□□ -0.34
ATG4D-201ENST00000309469 SVIPQ8NHG7 77 aa12.95□□□□□ -0.34
ATG4D-201ENST00000309469 Q6ZSA8 131 aa12.94□□□□□ -0.34
ATG4D-201ENST00000309469 FAT2Q9NYQ8 4349 aa12.94□□□□□ -0.34
ATG4D-201ENST00000309469 DNAH5Q8TE73 4624 aa12.93□□□□□ -0.34
ATG4D-201ENST00000309469 SERP2Q8N6R1 65 aa12.93□□□□□ -0.34
ATG4D-201ENST00000309469 LCE6AA0A183 80 aa12.92□□□□□ -0.34
ATG4D-201ENST00000309469 PKD1P98161 4303 aa12.92□□□□□ -0.34
ATG4D-201ENST00000309469 ZNF706Q9Y5V0 76 aaPredicted RBP12.92□□□□□ -0.34
ATG4D-201ENST00000309469 BPY2O14599 106 aa12.9□□□□□ -0.34
ATG4D-201ENST00000309469 LINC00483Q53H64 154 aa12.9□□□□□ -0.34
ATG4D-201ENST00000309469 IGLV7-43P04211 117 aa12.89□□□□□ -0.35
ATG4D-201ENST00000309469 SMIM20Q8N5G0 67 aa12.88□□□□□ -0.35
ATG4D-201ENST00000309469 SACSQ9NZJ4 4579 aa12.85□□□□□ -0.35
ATG4D-201ENST00000309469 Q8N9L7 120 aa12.84□□□□□ -0.35
ATG4D-201ENST00000309469 IGKV4-1P06312 121 aa12.84□□□□□ -0.35
ATG4D-201ENST00000309469 IGLV9-49A0A0B4J1Y8 123 aa12.82□□□□□ -0.36
ATG4D-201ENST00000309469 A0A087WSZ3 146 aa12.82□□□□□ -0.36
ATG4D-201ENST00000309469 LINC00336Q6ZUF6 198 aa12.82□□□□□ -0.36
ATG4D-201ENST00000309469 ANAPC11Q9NYG5 84 aa12.78□□□□□ -0.36
ATG4D-201ENST00000309469 TMEM258P61165 79 aa12.78□□□□□ -0.36
ATG4D-201ENST00000309469 RPS28P62857 69 aaKnown RBP12.77□□□□□ -0.37
ATG4D-201ENST00000309469 RPL37AP61513 92 aaKnown RBP12.76□□□□□ -0.37
ATG4D-201ENST00000309469 TRAV7A0A075B6U4 112 aa12.74□□□□□ -0.37
ATG4D-201ENST00000309469 DSCR10P59022 87 aa12.73□□□□□ -0.37
ATG4D-201ENST00000309469 J3KT08 172 aa12.72□□□□□ -0.37
ATG4D-201ENST00000309469 MOBPQ13875 183 aa12.72□□□□□ -0.37
ATG4D-201ENST00000309469 CYSTM1Q9H1C7 97 aa12.7□□□□□ -0.38
ATG4D-201ENST00000309469 LRP1BQ9NZR2 4599 aa12.69□□□□□ -0.38
ATG4D-201ENST00000309469 DEFB116Q30KQ4 102 aa12.68□□□□□ -0.38
ATG4D-201ENST00000309469 A0A1B0GVY2 172 aa12.68□□□□□ -0.38
ATG4D-201ENST00000309469 K7EQZ3 153 aa12.67□□□□□ -0.38
ATG4D-201ENST00000309469 LINC00472Q9H8W2 130 aa12.64□□□□□ -0.39
ATG4D-201ENST00000309469 HRCT1Q6UXD1 115 aa12.64□□□□□ -0.39
ATG4D-201ENST00000309469 C20orf197Q8N268 126 aa12.62□□□□□ -0.39
ATG4D-201ENST00000309469 OCR1Q9BZK8 76 aa12.58□□□□□ -0.4
ATG4D-201ENST00000309469 SSBP3-AS1Q7Z2R9 100 aa12.56□□□□□ -0.4
ATG4D-201ENST00000309469 KLKP1Q107X0 134 aa12.56□□□□□ -0.4
ATG4D-201ENST00000309469 RYR2Q92736 4967 aa12.55□□□□□ -0.4
ATG4D-201ENST00000309469 HCG22E2RYF7 251 aa12.55□□□□□ -0.4
ATG4D-201ENST00000309469 PKHD1P08F94 4074 aa12.54□□□□□ -0.4
ATG4D-201ENST00000309469 A8MWP4 228 aa12.53□□□□□ -0.4
ATG4D-201ENST00000309469 FAM229BQ4G0N7 80 aa12.53□□□□□ -0.4
ATG4D-201ENST00000309469 Q96NJ1 140 aa12.53□□□□□ -0.4
ATG4D-201ENST00000309469 A0A087X002 238 aa12.52□□□□□ -0.4
ATG4D-201ENST00000309469 PRR15Q8IV56 129 aa12.51□□□□□ -0.41
ATG4D-201ENST00000309469 DYNC1H1Q14204 4646 aaKnown RBP12.5□□□□□ -0.41
ATG4D-201ENST00000309469 CD164Q04900 197 aa12.5□□□□□ -0.41
ATG4D-201ENST00000309469 KRTAP1-4P0C5Y4 121 aa12.49□□□□□ -0.41
ATG4D-201ENST00000309469 KRTAP13-2Q52LG2 175 aa12.49□□□□□ -0.41
ATG4D-201ENST00000309469 SNURFQ9Y675 71 aa12.49□□□□□ -0.41
ATG4D-201ENST00000309469 H7BZZ5 65 aa12.48□□□□□ -0.41
ATG4D-201ENST00000309469 KMT2CQ8NEZ4 4911 aaKnown RBP12.47□□□□□ -0.41
ATG4D-201ENST00000309469 TMEM254Q8TBM7 123 aa12.47□□□□□ -0.41
ATG4D-201ENST00000309469 SMR3BP02814 79 aaPredicted RBP12.46□□□□□ -0.42
ATG4D-201ENST00000309469 WFDC13Q8IUB5 93 aa12.46□□□□□ -0.42
ATG4D-201ENST00000309469 NDUFC1O43677 76 aa12.45□□□□□ -0.42
ATG4D-201ENST00000309469 VPS13BQ7Z7G8 4022 aa12.45□□□□□ -0.42
ATG4D-201ENST00000309469 FAM236DA0A1B0GTK5 79 aa12.45□□□□□ -0.42
ATG4D-201ENST00000309469 FAM236CP0DP71 79 aa12.45□□□□□ -0.42
ATG4D-201ENST00000309469 SPINK6Q6UWN8 80 aa12.45□□□□□ -0.42
ATG4D-201ENST00000309469 NDUFB1O75438 58 aa12.44□□□□□ -0.42
ATG4D-201ENST00000309469 PLA2G1BP04054 148 aaKnown RBP12.41□□□□□ -0.42
ATG4D-201ENST00000309469 KRTAP29-1A8MX34 341 aaPredicted RBP12.41□□□□□ -0.42
ATG4D-201ENST00000309469 OXTP01178 125 aa12.41□□□□□ -0.42
ATG4D-201ENST00000309469 CASC2Q6XLA1 102 aa12.39□□□□□ -0.43
ATG4D-201ENST00000309469 A0A0U1RQV1 116 aa12.38□□□□□ -0.43
ATG4D-201ENST00000309469 SERP1Q9Y6X1 66 aa12.38□□□□□ -0.43
ATG4D-201ENST00000309469 ATP5EP56381 51 aaPredicted RBP12.36□□□□□ -0.43
ATG4D-201ENST00000309469 MMP24-AS1A0A0U1RRL7 71 aa12.35□□□□□ -0.43
ATG4D-201ENST00000309469 CDK2AP2O75956 126 aa12.35□□□□□ -0.43
ATG4D-201ENST00000309469 APOBP04114 4563 aaKnown RBP12.35□□□□□ -0.43
ATG4D-201ENST00000309469 ASB16-AS1Q495Z4 193 aa12.35□□□□□ -0.43
ATG4D-201ENST00000309469 A0A1B0GVX0 72 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms