RNA–Protein interactions for RNA: ENST00000302516.9

SF3B3-201, Transcript of splicing factor 3b subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B3, Length 9,720 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-201ENST00000302516 A0A0A0MQY5 61 aa4.74□□□□□ -1.65
SF3B3-201ENST00000302516 S4R3F8 94 aa4.74□□□□□ -1.65
SF3B3-201ENST00000302516 LINC00472Q9H8W2 130 aa4.74□□□□□ -1.65
SF3B3-201ENST00000302516 PLAC8Q9NZF1 115 aa4.73□□□□□ -1.65
SF3B3-201ENST00000302516 TNP2Q05952 138 aa4.73□□□□□ -1.65
SF3B3-201ENST00000302516 KRTAP1-3Q8IUG1 177 aa4.72□□□□□ -1.65
SF3B3-201ENST00000302516 H3BS24 57 aa4.72□□□□□ -1.65
SF3B3-201ENST00000302516 Q6ZSA8 131 aa4.72□□□□□ -1.65
SF3B3-201ENST00000302516 Q5W150 140 aa4.72□□□□□ -1.65
SF3B3-201ENST00000302516 TRANK1O15050 2925 aa4.71□□□□□ -1.66
SF3B3-201ENST00000302516 CYSTM1Q9H1C7 97 aa4.71□□□□□ -1.66
SF3B3-201ENST00000302516 CAMK2N1Q7Z7J9 78 aa4.71□□□□□ -1.66
SF3B3-201ENST00000302516 KRTAP1-1Q07627 177 aa4.7□□□□□ -1.66
SF3B3-201ENST00000302516 CSAG1Q6PB30 78 aa4.69□□□□□ -1.66
SF3B3-201ENST00000302516 Q6ZR54 194 aa4.69□□□□□ -1.66
SF3B3-201ENST00000302516 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP4.68□□□□□ -1.66
SF3B3-201ENST00000302516 ZNF292O60281 2723 aa4.68□□□□□ -1.66
SF3B3-201ENST00000302516 FLNCQ14315 2725 aa4.68□□□□□ -1.66
SF3B3-201ENST00000302516 ROMO1P60602 79 aa4.67□□□□□ -1.66
SF3B3-201ENST00000302516 SMR3BP02814 79 aaPredicted RBP4.67□□□□□ -1.66
SF3B3-201ENST00000302516 SPINK7P58062 85 aa4.67□□□□□ -1.66
SF3B3-201ENST00000302516 Q8NDZ9 215 aa4.65□□□□□ -1.67
SF3B3-201ENST00000302516 DNAH12Q6ZR08 3092 aa4.65□□□□□ -1.67
SF3B3-201ENST00000302516 PRAC1Q96KF2 57 aa4.65□□□□□ -1.67
SF3B3-201ENST00000302516 TEX15Q9BXT5 2789 aa4.64□□□□□ -1.67
SF3B3-201ENST00000302516 RPL37P61927 97 aaKnown RBP4.64□□□□□ -1.67
SF3B3-201ENST00000302516 KRTAP26-1Q6PEX3 210 aa4.62□□□□□ -1.67
SF3B3-201ENST00000302516 H1FX-AS1Q4G0G2 97 aa4.62□□□□□ -1.67
SF3B3-201ENST00000302516 OXTP01178 125 aa4.62□□□□□ -1.67
SF3B3-201ENST00000302516 IGSF10Q6WRI0 2623 aa4.61□□□□□ -1.67
SF3B3-201ENST00000302516 ITPR2Q14571 2701 aa4.6□□□□□ -1.67
SF3B3-201ENST00000302516 R4GN34 69 aa4.6□□□□□ -1.67
SF3B3-201ENST00000302516 SRCAPQ6ZRS2 3230 aa4.58□□□□□ -1.68
SF3B3-201ENST00000302516 KRTAP4-16G5E9R7 235 aaPredicted RBP4.57□□□□□ -1.68
SF3B3-201ENST00000302516 KRTAP29-1A8MX34 341 aaPredicted RBP4.57□□□□□ -1.68
SF3B3-201ENST00000302516 SPATA8Q6RVD6 105 aa4.57□□□□□ -1.68
SF3B3-201ENST00000302516 SEC61BP60468 96 aaKnown RBP4.56□□□□□ -1.68
SF3B3-201ENST00000302516 A0A087X002 238 aa4.56□□□□□ -1.68
SF3B3-201ENST00000302516 LCE6AA0A183 80 aa4.55□□□□□ -1.68
SF3B3-201ENST00000302516 RPS29P62273 56 aaKnown RBP4.54□□□□□ -1.68
SF3B3-201ENST00000302516 A6NN06 94 aa4.52□□□□□ -1.69
SF3B3-201ENST00000302516 M0R2T5 61 aa4.52□□□□□ -1.69
SF3B3-201ENST00000302516 PANO1I0J062 215 aa4.51□□□□□ -1.69
SF3B3-201ENST00000302516 APCP25054 2843 aa4.51□□□□□ -1.69
SF3B3-201ENST00000302516 M0QZ58 72 aa4.5□□□□□ -1.69
SF3B3-201ENST00000302516 NSD1Q96L73 2696 aaPredicted RBP4.5□□□□□ -1.69
SF3B3-201ENST00000302516 KRTAP1-5Q9BYS1 174 aa4.49□□□□□ -1.69
SF3B3-201ENST00000302516 KRTAP25-1Q3LHN0 102 aa4.48□□□□□ -1.69
SF3B3-201ENST00000302516 KRTAP16-1A8MUX0 517 aa4.47□□□□□ -1.69
SF3B3-201ENST00000302516 C5orf42Q9H799 3197 aa4.47□□□□□ -1.69
SF3B3-201ENST00000302516 NBEAL2Q6ZNJ1 2754 aa4.46□□□□□ -1.69
SF3B3-201ENST00000302516 ADM2Q7Z4H4 148 aa4.46□□□□□ -1.7
SF3B3-201ENST00000302516 MAP1AP78559 2803 aaPredicted RBP4.46□□□□□ -1.7
SF3B3-201ENST00000302516 CHD7Q9P2D1 2997 aa4.44□□□□□ -1.7
SF3B3-201ENST00000302516 Q5VSD8 79 aa4.44□□□□□ -1.7
SF3B3-201ENST00000302516 PLAC4Q8WY50 150 aa4.44□□□□□ -1.7
SF3B3-201ENST00000302516 GOLGB1Q14789 3259 aaKnown RBP4.43□□□□□ -1.7
SF3B3-201ENST00000302516 CEP350Q5VT06 3117 aa4.42□□□□□ -1.7
SF3B3-201ENST00000302516 CHD9Q3L8U1 2897 aa4.42□□□□□ -1.7
SF3B3-201ENST00000302516 ITPR1Q14643 2758 aa4.4□□□□□ -1.7
SF3B3-201ENST00000302516 KRTAP10-1P60331 282 aa4.4□□□□□ -1.7
SF3B3-201ENST00000302516 MGAQ8IWI9 3026 aa4.37□□□□□ -1.71
SF3B3-201ENST00000302516 NOTCH2NLQ7Z3S9 236 aa4.37□□□□□ -1.71
SF3B3-201ENST00000302516 KRTAP10-2P60368 255 aa4.37□□□□□ -1.71
SF3B3-201ENST00000302516 CFAP54Q96N23 3096 aa4.37□□□□□ -1.71
SF3B3-201ENST00000302516 HIVEP1P15822 2718 aa4.34□□□□□ -1.71
SF3B3-201ENST00000302516 KRTAP13-1Q8IUC0 172 aa4.34□□□□□ -1.71
SF3B3-201ENST00000302516 UBR5O95071 2799 aaPredicted RBP4.33□□□□□ -1.72
SF3B3-201ENST00000302516 DSPP15924 2871 aaKnown RBP4.32□□□□□ -1.72
SF3B3-201ENST00000302516 A8MUU9 505 aa4.32□□□□□ -1.72
SF3B3-201ENST00000302516 Q6ZRN7 208 aaPredicted RBP4.31□□□□□ -1.72
SF3B3-201ENST00000302516 PP632Q6XCG6 107 aa4.3□□□□□ -1.72
SF3B3-201ENST00000302516 A0A0C4DFX4 3053 aa4.3□□□□□ -1.72
SF3B3-201ENST00000302516 NDUFAF8A1L188 74 aa4.28□□□□□ -1.72
SF3B3-201ENST00000302516 C20orf166-AS1Q96NR2 134 aa4.28□□□□□ -1.73
SF3B3-201ENST00000302516 A8MU10 97 aa4.27□□□□□ -1.73
SF3B3-201ENST00000302516 FRYQ5TBA9 3013 aa4.26□□□□□ -1.73
SF3B3-201ENST00000302516 UTRNP46939 3433 aa4.26□□□□□ -1.73
SF3B3-201ENST00000302516 PCNTO95613 3336 aa4.26□□□□□ -1.73
SF3B3-201ENST00000302516 KRTAP7-1Q8IUC3 87 aa4.26□□□□□ -1.73
SF3B3-201ENST00000302516 TENM3Q9P273 2699 aa4.26□□□□□ -1.73
SF3B3-201ENST00000302516 KRTAP11-1Q8IUC1 163 aa4.25□□□□□ -1.73
SF3B3-201ENST00000302516 KRTAP13-2Q52LG2 175 aa4.25□□□□□ -1.73
SF3B3-201ENST00000302516 TNP1P09430 55 aa4.23□□□□□ -1.73
SF3B3-201ENST00000302516 NIPBLQ6KC79 2804 aaeCLIP4.23□□□□□ -1.732e-7■■■■■ 36.5
SF3B3-201ENST00000302516 LRBAP50851 2863 aa4.23□□□□□ -1.73
SF3B3-201ENST00000302516 LAMA2P24043 3122 aaKnown RBP4.2□□□□□ -1.74
SF3B3-201ENST00000302516 KALRNO60229 2985 aa4.2□□□□□ -1.74
SF3B3-201ENST00000302516 VPS13AQ96RL7 3174 aa4.16□□□□□ -1.74
SF3B3-201ENST00000302516 C10orf95Q9H7T3 257 aa4.16□□□□□ -1.74
SF3B3-201ENST00000302516 HTTP42858 3142 aa4.15□□□□□ -1.75
SF3B3-201ENST00000302516 TENM1Q9UKZ4 2725 aa4.12□□□□□ -1.75
SF3B3-201ENST00000302516 FRYLO94915 3013 aa4.12□□□□□ -1.75
SF3B3-201ENST00000302516 H0YAA0 97 aa4.12□□□□□ -1.75
SF3B3-201ENST00000302516 NF1P21359 2839 aa4.11□□□□□ -1.75
SF3B3-201ENST00000302516 TENM4Q6N022 2769 aa4.11□□□□□ -1.75
SF3B3-201ENST00000302516 TACC2O95359 2948 aa4.11□□□□□ -1.75
SF3B3-201ENST00000302516 P0C880 135 aa4.09□□□□□ -1.75
SF3B3-201ENST00000302516 HRNRQ86YZ3 2850 aaPredicted RBP4.09□□□□□ -1.75
SF3B3-201ENST00000302516 TRIOO75962 3097 aa4.08□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 87.1 ms