RNA–Protein interactions for RNA: ENST00000298875.8

CPSF2-201, Transcript of cleavage and polyadenylation specific factor 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF2, Length 13,035 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF2-201ENST00000298875 PLAC4Q8WY50 150 aa3.48□□□□□ -1.85
CPSF2-201ENST00000298875 NOTCH2NLQ7Z3S9 236 aa3.48□□□□□ -1.85
CPSF2-201ENST00000298875 SPINK7P58062 85 aa3.47□□□□□ -1.85
CPSF2-201ENST00000298875 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP3.45□□□□□ -1.86
CPSF2-201ENST00000298875 SPRR1BP22528 89 aa3.45□□□□□ -1.86
CPSF2-201ENST00000298875 KRTAP1-3Q8IUG1 177 aa3.45□□□□□ -1.86
CPSF2-201ENST00000298875 MMP24-AS1A0A0U1RRL7 71 aa3.45□□□□□ -1.86
CPSF2-201ENST00000298875 R4GN34 69 aa3.44□□□□□ -1.86
CPSF2-201ENST00000298875 FLNBO75369 2602 aaKnown RBP3.44□□□□□ -1.86
CPSF2-201ENST00000298875 RPL37P61927 97 aaKnown RBP3.44□□□□□ -1.86
CPSF2-201ENST00000298875 COL6A5A8TX70 2615 aa3.43□□□□□ -1.86
CPSF2-201ENST00000298875 ZCCHC13Q8WW36 166 aaKnown RBP3.43□□□□□ -1.86
CPSF2-201ENST00000298875 CEP350Q5VT06 3117 aa3.43□□□□□ -1.86
CPSF2-201ENST00000298875 GCN1Q92616 2671 aaKnown RBP3.43□□□□□ -1.86
CPSF2-201ENST00000298875 CYSTM1Q9H1C7 97 aa3.42□□□□□ -1.86
CPSF2-201ENST00000298875 Q5W150 140 aa3.42□□□□□ -1.86
CPSF2-201ENST00000298875 KRTAP25-1Q3LHN0 102 aa3.41□□□□□ -1.86
CPSF2-201ENST00000298875 Q6ZR54 194 aa3.41□□□□□ -1.86
CPSF2-201ENST00000298875 KRTAP1-1Q07627 177 aa3.41□□□□□ -1.86
CPSF2-201ENST00000298875 LCE6AA0A183 80 aa3.41□□□□□ -1.86
CPSF2-201ENST00000298875 H1FX-AS1Q4G0G2 97 aa3.41□□□□□ -1.86
CPSF2-201ENST00000298875 LINC00472Q9H8W2 130 aa3.4□□□□□ -1.87
CPSF2-201ENST00000298875 OXTP01178 125 aa3.39□□□□□ -1.87
CPSF2-201ENST00000298875 Q8NDZ9 215 aa3.39□□□□□ -1.87
CPSF2-201ENST00000298875 PLAC8Q9NZF1 115 aa3.39□□□□□ -1.87
CPSF2-201ENST00000298875 WDR87Q6ZQQ6 2873 aa3.38□□□□□ -1.87
CPSF2-201ENST00000298875 SPRR1AP35321 89 aa3.37□□□□□ -1.87
CPSF2-201ENST00000298875 M0QZ58 72 aa3.36□□□□□ -1.87
CPSF2-201ENST00000298875 BAHCC1Q9P281 2608 aa3.35□□□□□ -1.87
CPSF2-201ENST00000298875 TEP1Q99973 2627 aaKnown RBP3.35□□□□□ -1.87
CPSF2-201ENST00000298875 KRTAP26-1Q6PEX3 210 aa3.34□□□□□ -1.87
CPSF2-201ENST00000298875 PP632Q6XCG6 107 aa3.34□□□□□ -1.87
CPSF2-201ENST00000298875 ADM2Q7Z4H4 148 aa3.33□□□□□ -1.88
CPSF2-201ENST00000298875 ITPR3Q14573 2671 aa3.33□□□□□ -1.88
CPSF2-201ENST00000298875 KRTAP29-1A8MX34 341 aaPredicted RBP3.33□□□□□ -1.88
CPSF2-201ENST00000298875 SETXQ7Z333 2677 aaKnown RBP3.33□□□□□ -1.88
CPSF2-201ENST00000298875 KMT2BQ9UMN6 2715 aaPredicted RBP3.31□□□□□ -1.88
CPSF2-201ENST00000298875 CFAP46Q8IYW2 2715 aa3.31□□□□□ -1.88
CPSF2-201ENST00000298875 PANO1I0J062 215 aa3.31□□□□□ -1.88
CPSF2-201ENST00000298875 CENPFP49454 3210 aa3.3□□□□□ -1.88
CPSF2-201ENST00000298875 Q5VSD8 79 aa3.3□□□□□ -1.88
CPSF2-201ENST00000298875 RPS29P62273 56 aaKnown RBP3.28□□□□□ -1.88
CPSF2-201ENST00000298875 KRTAP1-5Q9BYS1 174 aa3.28□□□□□ -1.88
CPSF2-201ENST00000298875 DNAH12Q6ZR08 3092 aa3.28□□□□□ -1.88
CPSF2-201ENST00000298875 NDUFAF8A1L188 74 aa3.27□□□□□ -1.89
CPSF2-201ENST00000298875 PCNTO95613 3336 aa3.27□□□□□ -1.89
CPSF2-201ENST00000298875 HTTP42858 3142 aa3.26□□□□□ -1.89
CPSF2-201ENST00000298875 NSD1Q96L73 2696 aaPredicted RBP3.26□□□□□ -1.89
CPSF2-201ENST00000298875 IGSF10Q6WRI0 2623 aa3.25□□□□□ -1.89
CPSF2-201ENST00000298875 C20orf166-AS1Q96NR2 134 aa3.25□□□□□ -1.89
CPSF2-201ENST00000298875 KRTAP10-2P60368 255 aa3.25□□□□□ -1.89
CPSF2-201ENST00000298875 AKAP13Q12802 2813 aa3.25□□□□□ -1.89
CPSF2-201ENST00000298875 TRANK1O15050 2925 aa3.24□□□□□ -1.89
CPSF2-201ENST00000298875 KRTAP10-1P60331 282 aa3.24□□□□□ -1.89
CPSF2-201ENST00000298875 BPTFQ12830 3046 aa3.21□□□□□ -1.9
CPSF2-201ENST00000298875 CHD7Q9P2D1 2997 aa3.21□□□□□ -1.9
CPSF2-201ENST00000298875 MKI67P46013 3256 aaKnown RBP3.21□□□□□ -1.9
CPSF2-201ENST00000298875 KRTAP4-16G5E9R7 235 aaPredicted RBP3.21□□□□□ -1.9
CPSF2-201ENST00000298875 A8MU10 97 aa3.2□□□□□ -1.9
CPSF2-201ENST00000298875 KRTAP11-1Q8IUC1 163 aa3.2□□□□□ -1.9
CPSF2-201ENST00000298875 RANBP2P49792 3224 aaKnown RBP3.2□□□□□ -1.9
CPSF2-201ENST00000298875 LAMA3Q16787 3333 aa3.2□□□□□ -1.9
CPSF2-201ENST00000298875 A8MUU9 505 aa3.19□□□□□ -1.9
CPSF2-201ENST00000298875 CHD6Q8TD26 2715 aa3.18□□□□□ -1.9
CPSF2-201ENST00000298875 TNP1P09430 55 aa3.17□□□□□ -1.9
CPSF2-201ENST00000298875 ZNF292O60281 2723 aa3.16□□□□□ -1.9
CPSF2-201ENST00000298875 C10orf95Q9H7T3 257 aa3.15□□□□□ -1.9
CPSF2-201ENST00000298875 CHD9Q3L8U1 2897 aa3.14□□□□□ -1.91
CPSF2-201ENST00000298875 P0C880 135 aa3.13□□□□□ -1.91
CPSF2-201ENST00000298875 BRCA2P51587 3418 aa3.13□□□□□ -1.91
CPSF2-201ENST00000298875 TNRC18O15417 2968 aaPredicted RBP3.12□□□□□ -1.91
CPSF2-201ENST00000298875 ITPR2Q14571 2701 aa3.11□□□□□ -1.91
CPSF2-201ENST00000298875 C5orf42Q9H799 3197 aa3.09□□□□□ -1.91
CPSF2-201ENST00000298875 KRTAP13-2Q52LG2 175 aa3.09□□□□□ -1.92
CPSF2-201ENST00000298875 PRO2289Q9P1D8 64 aa3.09□□□□□ -1.92
CPSF2-201ENST00000298875 TEX15Q9BXT5 2789 aa3.08□□□□□ -1.92
CPSF2-201ENST00000298875 KRTAP7-1Q8IUC3 87 aa3.06□□□□□ -1.92
CPSF2-201ENST00000298875 UNC80Q8N2C7 3258 aa3.06□□□□□ -1.92
CPSF2-201ENST00000298875 MAP1AP78559 2803 aaPredicted RBP3.06□□□□□ -1.92
CPSF2-201ENST00000298875 CDH23Q9H251 3354 aa3.05□□□□□ -1.92
CPSF2-201ENST00000298875 Q6ZRN7 208 aaPredicted RBP3.05□□□□□ -1.92
CPSF2-201ENST00000298875 COL6A3P12111 3177 aa3.04□□□□□ -1.92
CPSF2-201ENST00000298875 KRTAP13-1Q8IUC0 172 aa3.04□□□□□ -1.92
CPSF2-201ENST00000298875 PRRC2CQ9Y520 2896 aaKnown RBP3.03□□□□□ -1.92
CPSF2-201ENST00000298875 PRUNE2Q8WUY3 3088 aa3.03□□□□□ -1.92
CPSF2-201ENST00000298875 TENM3Q9P273 2699 aa3.02□□□□□ -1.93
CPSF2-201ENST00000298875 UTP20O75691 2785 aaKnown RBP3.01□□□□□ -1.93
CPSF2-201ENST00000298875 XIRP2A4UGR9 3374 aa3.01□□□□□ -1.93
CPSF2-201ENST00000298875 INE1O15225 51 aa3□□□□□ -1.93
CPSF2-201ENST00000298875 A0A1B0GVY2 172 aa2.99□□□□□ -1.93
CPSF2-201ENST00000298875 KRTAP10-8P60410 259 aa2.99□□□□□ -1.93
CPSF2-201ENST00000298875 SZT2Q5T011 3432 aa2.99□□□□□ -1.93
CPSF2-201ENST00000298875 NIPBLQ6KC79 2804 aaeCLIP2.99□□□□□ -1.93
CPSF2-201ENST00000298875 ITPR1Q14643 2758 aa2.97□□□□□ -1.93
CPSF2-201ENST00000298875 CFAP54Q96N23 3096 aa2.97□□□□□ -1.93
CPSF2-201ENST00000298875 A0A0C4DFX4 3053 aa2.97□□□□□ -1.93
CPSF2-201ENST00000298875 H0YAA0 97 aa2.96□□□□□ -1.93
CPSF2-201ENST00000298875 HIVEP1P15822 2718 aa2.96□□□□□ -1.94
CPSF2-201ENST00000298875 REV3LO60673 3130 aa2.96□□□□□ -1.94
CPSF2-201ENST00000298875 MGAQ8IWI9 3026 aa2.95□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms