RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 H7BZZ5 65 aa11.43□□□□□ -0.58
SHKBP1-201ENST00000291842 UBE2AP49459 152 aa11.42□□□□□ -0.58
SHKBP1-201ENST00000291842 KLKP1Q107X0 134 aa11.42□□□□□ -0.58
SHKBP1-201ENST00000291842 DEFB116Q30KQ4 102 aa11.42□□□□□ -0.58
SHKBP1-201ENST00000291842 PRKDCP78527 4128 aaKnown RBP11.42□□□□□ -0.58
SHKBP1-201ENST00000291842 DSCR10P59022 87 aa11.41□□□□□ -0.58
SHKBP1-201ENST00000291842 K7EQZ3 153 aa11.39□□□□□ -0.59
SHKBP1-201ENST00000291842 OXTP01178 125 aa11.39□□□□□ -0.59
SHKBP1-201ENST00000291842 OCR1Q9BZK8 76 aa11.39□□□□□ -0.59
SHKBP1-201ENST00000291842 A0A087WSZ3 146 aa11.37□□□□□ -0.59
SHKBP1-201ENST00000291842 RPS28P62857 69 aaKnown RBP11.37□□□□□ -0.59
SHKBP1-201ENST00000291842 MEGF8Q7Z7M0 2845 aa11.37□□□□□ -0.59
SHKBP1-201ENST00000291842 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.36□□□□□ -0.59
SHKBP1-201ENST00000291842 TMEM254Q8TBM7 123 aa11.36□□□□□ -0.59
SHKBP1-201ENST00000291842 FAM30AQ9NZY2 134 aa11.36□□□□□ -0.59
SHKBP1-201ENST00000291842 FAM236DA0A1B0GTK5 79 aa11.35□□□□□ -0.59
SHKBP1-201ENST00000291842 FAM236CP0DP71 79 aa11.35□□□□□ -0.59
SHKBP1-201ENST00000291842 IGLV8-61A0A075B6I0 122 aa11.34□□□□□ -0.59
SHKBP1-201ENST00000291842 LINC00474Q9P2X8 69 aa11.34□□□□□ -0.59
SHKBP1-201ENST00000291842 H0Y9J4 135 aa11.33□□□□□ -0.6
SHKBP1-201ENST00000291842 VPS13DQ5THJ4 4388 aa11.32□□□□□ -0.6
SHKBP1-201ENST00000291842 A0A087WTM6 91 aa11.31□□□□□ -0.6
SHKBP1-201ENST00000291842 SPACA4Q8TDM5 124 aa11.3□□□□□ -0.6
SHKBP1-201ENST00000291842 KMT2AQ03164 3969 aa11.3□□□□□ -0.6
SHKBP1-201ENST00000291842 PKIGQ9Y2B9 76 aa11.3□□□□□ -0.6
SHKBP1-201ENST00000291842 RPL37AP61513 92 aaKnown RBP11.29□□□□□ -0.6
SHKBP1-201ENST00000291842 SPRR1BP22528 89 aa11.28□□□□□ -0.6
SHKBP1-201ENST00000291842 KRTAP13-1Q8IUC0 172 aa11.26□□□□□ -0.61
SHKBP1-201ENST00000291842 A0A0U1RQV1 116 aa11.26□□□□□ -0.61
SHKBP1-201ENST00000291842 TGP01266 2768 aa11.25□□□□□ -0.61
SHKBP1-201ENST00000291842 HCG22E2RYF7 251 aa11.24□□□□□ -0.61
SHKBP1-201ENST00000291842 RTL8CO15255 209 aa11.24□□□□□ -0.61
SHKBP1-201ENST00000291842 DNHD1Q96M86 4753 aa11.23□□□□□ -0.61
SHKBP1-201ENST00000291842 NDUFC1O43677 76 aa11.23□□□□□ -0.61
SHKBP1-201ENST00000291842 WFDC13Q8IUB5 93 aa11.23□□□□□ -0.61
SHKBP1-201ENST00000291842 HECTD4Q9Y4D8 3996 aa11.23□□□□□ -0.61
SHKBP1-201ENST00000291842 DNAH2Q9P225 4427 aa11.22□□□□□ -0.61
SHKBP1-201ENST00000291842 IGLV9-49A0A0B4J1Y8 123 aa11.21□□□□□ -0.62
SHKBP1-201ENST00000291842 Q6ZR54 194 aa11.2□□□□□ -0.62
SHKBP1-201ENST00000291842 FBN3Q75N90 2809 aa11.2□□□□□ -0.62
SHKBP1-201ENST00000291842 SERP1Q9Y6X1 66 aa11.19□□□□□ -0.62
SHKBP1-201ENST00000291842 PSORS1C2Q9UIG4 136 aa11.17□□□□□ -0.62
SHKBP1-201ENST00000291842 LINC00472Q9H8W2 130 aa11.15□□□□□ -0.62
SHKBP1-201ENST00000291842 FRAS1Q86XX4 4008 aa11.14□□□□□ -0.63
SHKBP1-201ENST00000291842 C4orf26Q17RF5 130 aa11.14□□□□□ -0.63
SHKBP1-201ENST00000291842 HRCT1Q6UXD1 115 aa11.14□□□□□ -0.63
SHKBP1-201ENST00000291842 ANAPC11Q9NYG5 84 aa11.14□□□□□ -0.63
SHKBP1-201ENST00000291842 LCE6AA0A183 80 aa11.13□□□□□ -0.63
SHKBP1-201ENST00000291842 Q5XG85 94 aa11.13□□□□□ -0.63
SHKBP1-201ENST00000291842 IGLV5-52A0A0A0MRZ9 124 aa11.13□□□□□ -0.63
SHKBP1-201ENST00000291842 LY6G6CO95867 125 aa11.12□□□□□ -0.63
SHKBP1-201ENST00000291842 C1orf134Q5TEV5 83 aa11.12□□□□□ -0.63
SHKBP1-201ENST00000291842 PRR15Q8IV56 129 aa11.11□□□□□ -0.63
SHKBP1-201ENST00000291842 DNAH17Q9UFH2 4485 aa11.09□□□□□ -0.63
SHKBP1-201ENST00000291842 A8MWP4 228 aa11.09□□□□□ -0.63
SHKBP1-201ENST00000291842 PLAC8Q9NZF1 115 aa11.09□□□□□ -0.63
SHKBP1-201ENST00000291842 KRTAP29-1A8MX34 341 aaPredicted RBP11.08□□□□□ -0.64
SHKBP1-201ENST00000291842 CASC2Q6XLA1 102 aa11.08□□□□□ -0.64
SHKBP1-201ENST00000291842 DNAH8Q96JB1 4490 aa11.08□□□□□ -0.64
SHKBP1-201ENST00000291842 ATP5EP56381 51 aaPredicted RBP11.08□□□□□ -0.64
SHKBP1-201ENST00000291842 LINC00483Q53H64 154 aa11.06□□□□□ -0.64
SHKBP1-201ENST00000291842 ZCCHC13Q8WW36 166 aaKnown RBP11.06□□□□□ -0.64
SHKBP1-201ENST00000291842 MOBPQ13875 183 aa11.05□□□□□ -0.64
SHKBP1-201ENST00000291842 WWC2-AS2Q96NR7 200 aa11.04□□□□□ -0.64
SHKBP1-201ENST00000291842 ZNF861PO60384 105 aa11.04□□□□□ -0.64
SHKBP1-201ENST00000291842 ZNF706Q9Y5V0 76 aaPredicted RBP11.02□□□□□ -0.65
SHKBP1-201ENST00000291842 Q96NJ1 140 aa11.02□□□□□ -0.65
SHKBP1-201ENST00000291842 FAM229BQ4G0N7 80 aa11.01□□□□□ -0.65
SHKBP1-201ENST00000291842 FP248Q71RG6 208 aaPredicted RBP11.01□□□□□ -0.65
SHKBP1-201ENST00000291842 DNAH6Q9C0G6 4158 aa11□□□□□ -0.65
SHKBP1-201ENST00000291842 PRR4Q16378 134 aa10.99□□□□□ -0.65
SHKBP1-201ENST00000291842 LINC00208Q96KT6 92 aa10.98□□□□□ -0.65
SHKBP1-201ENST00000291842 SMIM26A0A096LP01 95 aa10.98□□□□□ -0.65
SHKBP1-201ENST00000291842 MMP24-AS1A0A0U1RRL7 71 aa10.98□□□□□ -0.65
SHKBP1-201ENST00000291842 MP68P56378 58 aa10.97□□□□□ -0.65
SHKBP1-201ENST00000291842 KRTAP10-2P60368 255 aa10.97□□□□□ -0.65
SHKBP1-201ENST00000291842 NDUFB1O75438 58 aa10.97□□□□□ -0.65
SHKBP1-201ENST00000291842 H0Y9P7 68 aa10.95□□□□□ -0.66
SHKBP1-201ENST00000291842 IGLV7-43P04211 117 aa10.94□□□□□ -0.66
SHKBP1-201ENST00000291842 hDV103S1A0JD37 113 aa10.94□□□□□ -0.66
SHKBP1-201ENST00000291842 CIRBP-AS1Q8TBR5 109 aa10.92□□□□□ -0.66
SHKBP1-201ENST00000291842 IGHV6-1A0A0B4J1U7 121 aa10.91□□□□□ -0.66
SHKBP1-201ENST00000291842 TRAV22A0A0B4J277 110 aa10.9□□□□□ -0.66
SHKBP1-201ENST00000291842 SEC61GP60059 68 aa10.9□□□□□ -0.66
SHKBP1-201ENST00000291842 MPLKIPQ8TAP9 179 aa10.9□□□□□ -0.66
SHKBP1-201ENST00000291842 DNAH5Q8TE73 4624 aa10.89□□□□□ -0.67
SHKBP1-201ENST00000291842 C1orf64Q8NEQ6 169 aa10.89□□□□□ -0.67
SHKBP1-201ENST00000291842 DNAH11Q96DT5 4516 aa10.89□□□□□ -0.67
SHKBP1-201ENST00000291842 C8orf17Q9NRJ1 99 aa10.87□□□□□ -0.67
SHKBP1-201ENST00000291842 ALMS1Q8TCU4 4167 aa10.86□□□□□ -0.67
SHKBP1-201ENST00000291842 SPINK6Q6UWN8 80 aa10.85□□□□□ -0.67
SHKBP1-201ENST00000291842 PRO0628Q9UI54 55 aa10.85□□□□□ -0.67
SHKBP1-201ENST00000291842 A0A087X002 238 aa10.84□□□□□ -0.67
SHKBP1-201ENST00000291842 A0A1B0GVX0 72 aa10.84□□□□□ -0.67
SHKBP1-201ENST00000291842 CDK2AP2O75956 126 aa10.84□□□□□ -0.67
SHKBP1-201ENST00000291842 NOTCH2NLQ7Z3S9 236 aa10.84□□□□□ -0.67
SHKBP1-201ENST00000291842 HYDINQ4G0P3 5121 aa10.83□□□□□ -0.68
SHKBP1-201ENST00000291842 NDUFS5O43920 106 aa10.82□□□□□ -0.68
SHKBP1-201ENST00000291842 ASB16-AS1Q495Z4 193 aa10.82□□□□□ -0.68
SHKBP1-201ENST00000291842 KRTAP10-1P60331 282 aa10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 88.5 ms