RNA–Protein interactions for RNA: ENST00000225964.9

COL1A1-201, Transcript of collagen type I alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL1A1, Length 6,727 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1-201ENST00000225964 OXTP01178 125 aa7.91□□□□□ -1.14
COL1A1-201ENST00000225964 SPRR1BP22528 89 aa7.9□□□□□ -1.14
COL1A1-201ENST00000225964 ADM2Q7Z4H4 148 aa7.89□□□□□ -1.15
COL1A1-201ENST00000225964 KRTAP26-1Q6PEX3 210 aa7.88□□□□□ -1.15
COL1A1-201ENST00000225964 C5orf42Q9H799 3197 aa7.87□□□□□ -1.15
COL1A1-201ENST00000225964 A0A0A0MQY5 61 aa7.87□□□□□ -1.15
COL1A1-201ENST00000225964 USP24Q9UPU5 2620 aa7.86□□□□□ -1.15
COL1A1-201ENST00000225964 RPL37P61927 97 aaKnown RBP7.86□□□□□ -1.15
COL1A1-201ENST00000225964 ROMO1P60602 79 aa7.85□□□□□ -1.15
COL1A1-201ENST00000225964 H1FX-AS1Q4G0G2 97 aa7.85□□□□□ -1.15
COL1A1-201ENST00000225964 FP248Q71RG6 208 aaPredicted RBP7.85□□□□□ -1.15
COL1A1-201ENST00000225964 BPTFQ12830 3046 aa7.84□□□□□ -1.15
COL1A1-201ENST00000225964 Q5VV11 94 aa7.83□□□□□ -1.16
COL1A1-201ENST00000225964 Q6ZR54 194 aa7.8□□□□□ -1.16
COL1A1-201ENST00000225964 SPATA8Q6RVD6 105 aa7.78□□□□□ -1.16
COL1A1-201ENST00000225964 PANO1I0J062 215 aa7.76□□□□□ -1.17
COL1A1-201ENST00000225964 CYSTM1Q9H1C7 97 aa7.76□□□□□ -1.17
COL1A1-201ENST00000225964 Q5XG85 94 aa7.76□□□□□ -1.17
COL1A1-201ENST00000225964 HELZ2Q9BYK8 2649 aaKnown RBP7.75□□□□□ -1.17
COL1A1-201ENST00000225964 CEP350Q5VT06 3117 aa7.74□□□□□ -1.17
COL1A1-201ENST00000225964 A0A087X002 238 aa7.73□□□□□ -1.17
COL1A1-201ENST00000225964 MAST4O15021 2626 aa7.7□□□□□ -1.18
COL1A1-201ENST00000225964 XIRP2A4UGR9 3374 aa7.69□□□□□ -1.18
COL1A1-201ENST00000225964 ATRQ13535 2644 aa7.68□□□□□ -1.18
COL1A1-201ENST00000225964 SETXQ7Z333 2677 aaKnown RBP7.63□□□□□ -1.19
COL1A1-201ENST00000225964 BAHCC1Q9P281 2608 aa7.62□□□□□ -1.19
COL1A1-201ENST00000225964 KRTAP4-16G5E9R7 235 aaPredicted RBP7.6□□□□□ -1.19
COL1A1-201ENST00000225964 A8MUU9 505 aa7.6□□□□□ -1.19
COL1A1-201ENST00000225964 FLNAP21333 2647 aaKnown RBP7.58□□□□□ -1.2
COL1A1-201ENST00000225964 NOTCH2NLQ7Z3S9 236 aa7.58□□□□□ -1.2
COL1A1-201ENST00000225964 CFAP54Q96N23 3096 aa7.58□□□□□ -1.2
COL1A1-201ENST00000225964 PRRC2CQ9Y520 2896 aaKnown RBP7.57□□□□□ -1.2
COL1A1-201ENST00000225964 FLG2Q5D862 2391 aaPredicted RBP7.57□□□□□ -1.2
COL1A1-201ENST00000225964 C20orf166-AS1Q96NR2 134 aa7.56□□□□□ -1.2
COL1A1-201ENST00000225964 FREM2Q5SZK8 3169 aa7.56□□□□□ -1.2
COL1A1-201ENST00000225964 ITPR3Q14573 2671 aa7.56□□□□□ -1.2
COL1A1-201ENST00000225964 MKI67P46013 3256 aaKnown RBP7.55□□□□□ -1.2
COL1A1-201ENST00000225964 CFAP46Q8IYW2 2715 aa7.54□□□□□ -1.2
COL1A1-201ENST00000225964 KRTAP29-1A8MX34 341 aaPredicted RBP7.54□□□□□ -1.2
COL1A1-201ENST00000225964 RPS29P62273 56 aaKnown RBP7.52□□□□□ -1.2
COL1A1-201ENST00000225964 KRTAP11-1Q8IUC1 163 aa7.52□□□□□ -1.2
COL1A1-201ENST00000225964 DNAH14Q0VDD8 3507 aa7.51□□□□□ -1.21
COL1A1-201ENST00000225964 CELSR3Q9NYQ7 3312 aa7.5□□□□□ -1.21
COL1A1-201ENST00000225964 A8MU10 97 aa7.5□□□□□ -1.21
COL1A1-201ENST00000225964 CDH23Q9H251 3354 aa7.49□□□□□ -1.21
COL1A1-201ENST00000225964 ASB16-AS1Q495Z4 193 aa7.48□□□□□ -1.21
COL1A1-201ENST00000225964 Q6ZRN7 208 aaPredicted RBP7.46□□□□□ -1.21
COL1A1-201ENST00000225964 LAMA2P24043 3122 aaKnown RBP7.45□□□□□ -1.22
COL1A1-201ENST00000225964 TEP1Q99973 2627 aaKnown RBP7.44□□□□□ -1.22
COL1A1-201ENST00000225964 KRTAP13-2Q52LG2 175 aa7.43□□□□□ -1.22
COL1A1-201ENST00000225964 STAB1Q9NY15 2570 aa7.43□□□□□ -1.22
COL1A1-201ENST00000225964 BRCA2P51587 3418 aa7.42□□□□□ -1.22
COL1A1-201ENST00000225964 LAMA3Q16787 3333 aa7.42□□□□□ -1.22
COL1A1-201ENST00000225964 SZT2Q5T011 3432 aa7.41□□□□□ -1.22
COL1A1-201ENST00000225964 A0A0C4DFX4 3053 aa7.4□□□□□ -1.23
COL1A1-201ENST00000225964 KRTAP21-3Q3LHN1 58 aa7.39□□□□□ -1.23
COL1A1-201ENST00000225964 CHD7Q9P2D1 2997 aa7.37□□□□□ -1.23
COL1A1-201ENST00000225964 KRTAP25-1Q3LHN0 102 aa7.37□□□□□ -1.23
COL1A1-201ENST00000225964 TNP1P09430 55 aa7.36□□□□□ -1.23
COL1A1-201ENST00000225964 REV3LO60673 3130 aa7.36□□□□□ -1.23
COL1A1-201ENST00000225964 RANBP2P49792 3224 aaKnown RBP7.35□□□□□ -1.23
COL1A1-201ENST00000225964 KRTAP7-1Q8IUC3 87 aa7.35□□□□□ -1.23
COL1A1-201ENST00000225964 KRTAP16-1A8MUX0 517 aa7.33□□□□□ -1.24
COL1A1-201ENST00000225964 PRUNE2Q8WUY3 3088 aa7.32□□□□□ -1.24
COL1A1-201ENST00000225964 TRIOO75962 3097 aa7.32□□□□□ -1.24
COL1A1-201ENST00000225964 C10orf95Q9H7T3 257 aa7.3□□□□□ -1.24
COL1A1-201ENST00000225964 TEX15Q9BXT5 2789 aa7.3□□□□□ -1.24
COL1A1-201ENST00000225964 KRTAP13-1Q8IUC0 172 aa7.28□□□□□ -1.24
COL1A1-201ENST00000225964 A0A1B0GVY2 172 aa7.28□□□□□ -1.24
COL1A1-201ENST00000225964 KRTAP10-8P60410 259 aa7.23□□□□□ -1.25
COL1A1-201ENST00000225964 NDUFAF8A1L188 74 aa7.23□□□□□ -1.25
COL1A1-201ENST00000225964 A6NN06 94 aa7.21□□□□□ -1.26
COL1A1-201ENST00000225964 AKAP13Q12802 2813 aa7.21□□□□□ -1.26
COL1A1-201ENST00000225964 VPS13AQ96RL7 3174 aa7.2□□□□□ -1.26
COL1A1-201ENST00000225964 UNC80Q8N2C7 3258 aa7.2□□□□□ -1.26
COL1A1-201ENST00000225964 HTTP42858 3142 aa7.17□□□□□ -1.26
COL1A1-201ENST00000225964 DMBT1Q9UGM3 2413 aaPredicted RBP7.17□□□□□ -1.26
COL1A1-201ENST00000225964 MGAQ8IWI9 3026 aa7.16□□□□□ -1.26
COL1A1-201ENST00000225964 COL6A5A8TX70 2615 aa7.16□□□□□ -1.26
COL1A1-201ENST00000225964 NBEAL1Q6ZS30 2694 aa7.15□□□□□ -1.27
COL1A1-201ENST00000225964 CENPEQ02224 2701 aa7.14□□□□□ -1.27
COL1A1-201ENST00000225964 WDFY4Q6ZS81 3184 aa7.14□□□□□ -1.27
COL1A1-201ENST00000225964 CHD6Q8TD26 2715 aa7.13□□□□□ -1.27
COL1A1-201ENST00000225964 XP32Q5T750 250 aa7.12□□□□□ -1.27
COL1A1-201ENST00000225964 NOTCH1P46531 2555 aa7.11□□□□□ -1.27
COL1A1-201ENST00000225964 CHD9Q3L8U1 2897 aa7.07□□□□□ -1.28
COL1A1-201ENST00000225964 KRTAP10-10P60014 251 aa7.07□□□□□ -1.28
COL1A1-201ENST00000225964 COL6A3P12111 3177 aa7.06□□□□□ -1.28
COL1A1-201ENST00000225964 UNC79Q9P2D8 2635 aa7.05□□□□□ -1.28
COL1A1-201ENST00000225964 CFAP47Q6ZTR5 3102 aa7.04□□□□□ -1.28
COL1A1-201ENST00000225964 GCN1Q92616 2671 aaKnown RBP7.03□□□□□ -1.28
COL1A1-201ENST00000225964 MYO15AQ9UKN7 3530 aa7.02□□□□□ -1.29
COL1A1-201ENST00000225964 SPEGQ15772 3267 aa7.02□□□□□ -1.29
COL1A1-201ENST00000225964 USP34Q70CQ2 3546 aa7.02□□□□□ -1.29
COL1A1-201ENST00000225964 VCANP13611 3396 aa7.01□□□□□ -1.29
COL1A1-201ENST00000225964 PP632Q6XCG6 107 aa7□□□□□ -1.29
COL1A1-201ENST00000225964 KRTAP1-4P0C5Y4 121 aa6.98□□□□□ -1.29
COL1A1-201ENST00000225964 PRO2289Q9P1D8 64 aa6.98□□□□□ -1.29
COL1A1-201ENST00000225964 FRYQ5TBA9 3013 aa6.97□□□□□ -1.29
COL1A1-201ENST00000225964 TPRXLQ17RH7 258 aa6.97□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 118.7 ms