RNA–Protein interactions for RNA: ENST00000211998.9

VCL-201, Transcript of vinculin, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VCL, Length 5,490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-201ENST00000211998 LAMA2P24043 3122 aaKnown RBP6.38□□□□□ -1.39
VCL-201ENST00000211998 A8MU10 97 aa6.38□□□□□ -1.39
VCL-201ENST00000211998 PRRC2CQ9Y520 2896 aaKnown RBP6.37□□□□□ -1.39
VCL-201ENST00000211998 Q6ZSA8 131 aa6.37□□□□□ -1.39
VCL-201ENST00000211998 ADM2Q7Z4H4 148 aa6.36□□□□□ -1.39
VCL-201ENST00000211998 LINC00483Q53H64 154 aa6.36□□□□□ -1.39
VCL-201ENST00000211998 SPATA8Q6RVD6 105 aa6.35□□□□□ -1.39
VCL-201ENST00000211998 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.35□□□□□ -1.39
VCL-201ENST00000211998 HECTD1Q9ULT8 2610 aa6.35□□□□□ -1.39
VCL-201ENST00000211998 TNRC18O15417 2968 aaPredicted RBP6.34□□□□□ -1.39
VCL-201ENST00000211998 PLAC8Q9NZF1 115 aa6.34□□□□□ -1.39
VCL-201ENST00000211998 KRTAP26-1Q6PEX3 210 aa6.34□□□□□ -1.4
VCL-201ENST00000211998 KRTAP29-1A8MX34 341 aaPredicted RBP6.33□□□□□ -1.4
VCL-201ENST00000211998 RPL37P61927 97 aaKnown RBP6.33□□□□□ -1.4
VCL-201ENST00000211998 SPRR1BP22528 89 aa6.32□□□□□ -1.4
VCL-201ENST00000211998 Q6ZR54 194 aa6.32□□□□□ -1.4
VCL-201ENST00000211998 KRTAP25-1Q3LHN0 102 aa6.32□□□□□ -1.4
VCL-201ENST00000211998 CAMK2N1Q7Z7J9 78 aa6.31□□□□□ -1.4
VCL-201ENST00000211998 H1FX-AS1Q4G0G2 97 aa6.31□□□□□ -1.4
VCL-201ENST00000211998 CDH23Q9H251 3354 aa6.31□□□□□ -1.4
VCL-201ENST00000211998 MGAM2Q2M2H8 2515 aa6.31□□□□□ -1.4
VCL-201ENST00000211998 PRUNE2Q8WUY3 3088 aa6.3□□□□□ -1.4
VCL-201ENST00000211998 BPTFQ12830 3046 aa6.3□□□□□ -1.4
VCL-201ENST00000211998 VCANP13611 3396 aa6.29□□□□□ -1.4
VCL-201ENST00000211998 COL6A3P12111 3177 aa6.28□□□□□ -1.4
VCL-201ENST00000211998 USP24Q9UPU5 2620 aa6.28□□□□□ -1.4
VCL-201ENST00000211998 LCE6AA0A183 80 aa6.26□□□□□ -1.41
VCL-201ENST00000211998 EYSQ5T1H1 3165 aa6.25□□□□□ -1.41
VCL-201ENST00000211998 NDUFAF8A1L188 74 aa6.24□□□□□ -1.41
VCL-201ENST00000211998 S4R3F8 94 aa6.23□□□□□ -1.41
VCL-201ENST00000211998 FLNAP21333 2647 aaKnown RBP6.23□□□□□ -1.41
VCL-201ENST00000211998 UNC80Q8N2C7 3258 aa6.22□□□□□ -1.41
VCL-201ENST00000211998 M0R2T5 61 aa6.19□□□□□ -1.42
VCL-201ENST00000211998 HELZ2Q9BYK8 2649 aaKnown RBP6.19□□□□□ -1.42
VCL-201ENST00000211998 KRTAP4-16G5E9R7 235 aaPredicted RBP6.19□□□□□ -1.42
VCL-201ENST00000211998 MAST4O15021 2626 aa6.19□□□□□ -1.42
VCL-201ENST00000211998 ITPR3Q14573 2671 aa6.17□□□□□ -1.42
VCL-201ENST00000211998 SEC61BP60468 96 aaKnown RBP6.15□□□□□ -1.42
VCL-201ENST00000211998 XIRP2A4UGR9 3374 aa6.14□□□□□ -1.43
VCL-201ENST00000211998 CHD7Q9P2D1 2997 aa6.14□□□□□ -1.43
VCL-201ENST00000211998 ATRQ13535 2644 aa6.14□□□□□ -1.43
VCL-201ENST00000211998 KRTAP1-5Q9BYS1 174 aa6.13□□□□□ -1.43
VCL-201ENST00000211998 R4GN34 69 aa6.13□□□□□ -1.43
VCL-201ENST00000211998 A0A087X002 238 aa6.13□□□□□ -1.43
VCL-201ENST00000211998 PANO1I0J062 215 aa6.13□□□□□ -1.43
VCL-201ENST00000211998 NOTCH2NLQ7Z3S9 236 aa6.13□□□□□ -1.43
VCL-201ENST00000211998 C5orf42Q9H799 3197 aa6.12□□□□□ -1.43
VCL-201ENST00000211998 Q5VSD8 79 aa6.11□□□□□ -1.43
VCL-201ENST00000211998 CHD9Q3L8U1 2897 aa6.08□□□□□ -1.44
VCL-201ENST00000211998 KRTAP10-1P60331 282 aa6.08□□□□□ -1.44
VCL-201ENST00000211998 A8MUU9 505 aa6.07□□□□□ -1.44
VCL-201ENST00000211998 SETXQ7Z333 2677 aaKnown RBP6.07□□□□□ -1.44
VCL-201ENST00000211998 SPTBN5Q9NRC6 3674 aaKnown RBP6.07□□□□□ -1.44
VCL-201ENST00000211998 MUC3AQ02505 3323 aa6.06□□□□□ -1.44
VCL-201ENST00000211998 CFAP54Q96N23 3096 aa6.05□□□□□ -1.44
VCL-201ENST00000211998 M0QZ58 72 aa6.05□□□□□ -1.44
VCL-201ENST00000211998 CFAP46Q8IYW2 2715 aa6.04□□□□□ -1.44
VCL-201ENST00000211998 KRTAP10-2P60368 255 aa6.04□□□□□ -1.44
VCL-201ENST00000211998 REV3LO60673 3130 aa6.01□□□□□ -1.45
VCL-201ENST00000211998 DMBT1Q9UGM3 2413 aaPredicted RBP6□□□□□ -1.45
VCL-201ENST00000211998 KRTAP11-1Q8IUC1 163 aa6□□□□□ -1.45
VCL-201ENST00000211998 TRIOO75962 3097 aa6□□□□□ -1.45
VCL-201ENST00000211998 AKAP13Q12802 2813 aa5.99□□□□□ -1.45
VCL-201ENST00000211998 PLAC4Q8WY50 150 aa5.99□□□□□ -1.45
VCL-201ENST00000211998 WDFY4Q6ZS81 3184 aa5.99□□□□□ -1.45
VCL-201ENST00000211998 CENPEQ02224 2701 aa5.99□□□□□ -1.45
VCL-201ENST00000211998 TRANK1O15050 2925 aa5.98□□□□□ -1.45
VCL-201ENST00000211998 STAB1Q9NY15 2570 aa5.97□□□□□ -1.45
VCL-201ENST00000211998 FLG2Q5D862 2391 aaPredicted RBP5.97□□□□□ -1.45
VCL-201ENST00000211998 C20orf166-AS1Q96NR2 134 aa5.96□□□□□ -1.46
VCL-201ENST00000211998 CHD6Q8TD26 2715 aa5.95□□□□□ -1.46
VCL-201ENST00000211998 TEP1Q99973 2627 aaKnown RBP5.95□□□□□ -1.46
VCL-201ENST00000211998 RPS29P62273 56 aaKnown RBP5.93□□□□□ -1.46
VCL-201ENST00000211998 KRTAP7-1Q8IUC3 87 aa5.93□□□□□ -1.46
VCL-201ENST00000211998 UNC79Q9P2D8 2635 aa5.92□□□□□ -1.46
VCL-201ENST00000211998 BAHCC1Q9P281 2608 aa5.92□□□□□ -1.46
VCL-201ENST00000211998 NBEAL1Q6ZS30 2694 aa5.92□□□□□ -1.46
VCL-201ENST00000211998 GCN1Q92616 2671 aaKnown RBP5.9□□□□□ -1.46
VCL-201ENST00000211998 VPS13AQ96RL7 3174 aa5.9□□□□□ -1.47
VCL-201ENST00000211998 ZNF292O60281 2723 aa5.88□□□□□ -1.47
VCL-201ENST00000211998 Q6ZRN7 208 aaPredicted RBP5.85□□□□□ -1.47
VCL-201ENST00000211998 FREM2Q5SZK8 3169 aa5.85□□□□□ -1.47
VCL-201ENST00000211998 C10orf95Q9H7T3 257 aa5.85□□□□□ -1.47
VCL-201ENST00000211998 MYO15AQ9UKN7 3530 aa5.84□□□□□ -1.47
VCL-201ENST00000211998 TEX15Q9BXT5 2789 aa5.84□□□□□ -1.48
VCL-201ENST00000211998 NBEAL2Q6ZNJ1 2754 aa5.83□□□□□ -1.48
VCL-201ENST00000211998 COL6A5A8TX70 2615 aa5.82□□□□□ -1.48
VCL-201ENST00000211998 USP34Q70CQ2 3546 aa5.81□□□□□ -1.48
VCL-201ENST00000211998 NOTCH1P46531 2555 aa5.8□□□□□ -1.48
VCL-201ENST00000211998 KRTAP13-1Q8IUC0 172 aa5.78□□□□□ -1.48
VCL-201ENST00000211998 DMDP11532 3685 aa5.78□□□□□ -1.48
VCL-201ENST00000211998 H0YAA0 97 aa5.78□□□□□ -1.48
VCL-201ENST00000211998 FRYLO94915 3013 aa5.78□□□□□ -1.48
VCL-201ENST00000211998 DNAH14Q0VDD8 3507 aa5.73□□□□□ -1.49
VCL-201ENST00000211998 KRTAP21-3Q3LHN1 58 aa5.73□□□□□ -1.49
VCL-201ENST00000211998 KRTAP13-2Q52LG2 175 aa5.73□□□□□ -1.49
VCL-201ENST00000211998 P0C880 135 aa5.72□□□□□ -1.49
VCL-201ENST00000211998 FRYQ5TBA9 3013 aa5.71□□□□□ -1.49
VCL-201ENST00000211998 STAB2Q8WWQ8 2551 aa5.71□□□□□ -1.5
VCL-201ENST00000211998 IGSF10Q6WRI0 2623 aa5.7□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 80.6 ms