RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 C19orf73Q9NVV2 129 aa3.94□□□□□ -1.78
VPS13D-201ENST00000011700 A0A087WTM6 91 aa3.93□□□□□ -1.78
VPS13D-201ENST00000011700 GOLGB1Q14789 3259 aaKnown RBP3.93□□□□□ -1.78
VPS13D-201ENST00000011700 SEC61BP60468 96 aaKnown RBP3.93□□□□□ -1.78
VPS13D-201ENST00000011700 CHD7Q9P2D1 2997 aa3.92□□□□□ -1.78
VPS13D-201ENST00000011700 LRBAP50851 2863 aa3.92□□□□□ -1.78
VPS13D-201ENST00000011700 VPS13AQ96RL7 3174 aa3.91□□□□□ -1.78
VPS13D-201ENST00000011700 ZNF575Q86XF7 245 aa3.91□□□□□ -1.78
VPS13D-201ENST00000011700 LINC01558Q9Y6Z2 57 aa3.91□□□□□ -1.78
VPS13D-201ENST00000011700 CSAG1Q6PB30 78 aa3.91□□□□□ -1.78
VPS13D-201ENST00000011700 C5orf42Q9H799 3197 aa3.91□□□□□ -1.78
VPS13D-201ENST00000011700 Q6ZSA8 131 aa3.9□□□□□ -1.78
VPS13D-201ENST00000011700 TENM1Q9UKZ4 2725 aa3.9□□□□□ -1.78
VPS13D-201ENST00000011700 MGAQ8IWI9 3026 aa3.9□□□□□ -1.79
VPS13D-201ENST00000011700 OXTP01178 125 aa3.9□□□□□ -1.79
VPS13D-201ENST00000011700 FAM168BA1KXE4 195 aa3.9□□□□□ -1.79
VPS13D-201ENST00000011700 SMR3AQ99954 134 aa3.9□□□□□ -1.79
VPS13D-201ENST00000011700 DSCR10P59022 87 aa3.89□□□□□ -1.79
VPS13D-201ENST00000011700 TENM3Q9P273 2699 aa3.89□□□□□ -1.79
VPS13D-201ENST00000011700 FRYQ5TBA9 3013 aa3.88□□□□□ -1.79
VPS13D-201ENST00000011700 HIVEP1P15822 2718 aa3.88□□□□□ -1.79
VPS13D-201ENST00000011700 KRTAP10-9P60411 292 aa3.88□□□□□ -1.79
VPS13D-201ENST00000011700 M0R2T5 61 aa3.87□□□□□ -1.79
VPS13D-201ENST00000011700 Q8N9P0 234 aaPredicted RBP3.86□□□□□ -1.79
VPS13D-201ENST00000011700 SPRR1BP22528 89 aa3.86□□□□□ -1.79
VPS13D-201ENST00000011700 UTRNP46939 3433 aa3.85□□□□□ -1.79
VPS13D-201ENST00000011700 A0A1W2PNM2 257 aa3.85□□□□□ -1.79
VPS13D-201ENST00000011700 KRTAP24-1Q3LI83 254 aa3.85□□□□□ -1.79
VPS13D-201ENST00000011700 SPRR1AP35321 89 aa3.85□□□□□ -1.79
VPS13D-201ENST00000011700 FP248Q71RG6 208 aaPredicted RBP3.84□□□□□ -1.79
VPS13D-201ENST00000011700 ZCCHC13Q8WW36 166 aaKnown RBP3.84□□□□□ -1.79
VPS13D-201ENST00000011700 GIG44P09565 113 aaPredicted RBP3.84□□□□□ -1.79
VPS13D-201ENST00000011700 RPS29P62273 56 aaKnown RBP3.84□□□□□ -1.8
VPS13D-201ENST00000011700 S4R3F8 94 aa3.84□□□□□ -1.8
VPS13D-201ENST00000011700 ROMO1P60602 79 aa3.83□□□□□ -1.8
VPS13D-201ENST00000011700 RPL37P61927 97 aaKnown RBP3.83□□□□□ -1.8
VPS13D-201ENST00000011700 PLAC8Q9NZF1 115 aa3.82□□□□□ -1.8
VPS13D-201ENST00000011700 R4GN34 69 aa3.82□□□□□ -1.8
VPS13D-201ENST00000011700 TRIOO75962 3097 aa3.82□□□□□ -1.8
VPS13D-201ENST00000011700 K7EIL1 84 aa3.82□□□□□ -1.8
VPS13D-201ENST00000011700 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP3.82□□□□□ -1.8
VPS13D-201ENST00000011700 TACC2O95359 2948 aa3.82□□□□□ -1.8
VPS13D-201ENST00000011700 Q6ZR54 194 aa3.82□□□□□ -1.8
VPS13D-201ENST00000011700 CELSR2Q9HCU4 2923 aa3.81□□□□□ -1.8
VPS13D-201ENST00000011700 PDZD2O15018 2839 aa3.8□□□□□ -1.8
VPS13D-201ENST00000011700 TNRC18O15417 2968 aaPredicted RBP3.8□□□□□ -1.8
VPS13D-201ENST00000011700 LINC00472Q9H8W2 130 aa3.8□□□□□ -1.8
VPS13D-201ENST00000011700 A0A096LNT2 108 aa3.8□□□□□ -1.8
VPS13D-201ENST00000011700 A0A0D9SG42 100 aa3.79□□□□□ -1.8
VPS13D-201ENST00000011700 ASH1LQ9NR48 2969 aaKnown RBP3.79□□□□□ -1.8
VPS13D-201ENST00000011700 C9orf92A6NGG3 77 aa3.78□□□□□ -1.8
VPS13D-201ENST00000011700 Q5VV11 94 aa3.78□□□□□ -1.8
VPS13D-201ENST00000011700 M0QZ58 72 aa3.78□□□□□ -1.8
VPS13D-201ENST00000011700 PRR26Q8N8Z3 221 aa3.78□□□□□ -1.81
VPS13D-201ENST00000011700 ZZEF1O43149 2961 aa3.78□□□□□ -1.81
VPS13D-201ENST00000011700 Q8N1X5 172 aa3.77□□□□□ -1.81
VPS13D-201ENST00000011700 MMP24-AS1A0A0U1RRL7 71 aa3.77□□□□□ -1.81
VPS13D-201ENST00000011700 PLAC4Q8WY50 150 aa3.77□□□□□ -1.81
VPS13D-201ENST00000011700 WDFY4Q6ZS81 3184 aa3.77□□□□□ -1.81
VPS13D-201ENST00000011700 KRTAP21-3Q3LHN1 58 aa3.76□□□□□ -1.81
VPS13D-201ENST00000011700 KRTAP10-11P60412 298 aa3.76□□□□□ -1.81
VPS13D-201ENST00000011700 Q5XG85 94 aa3.75□□□□□ -1.81
VPS13D-201ENST00000011700 A0A1W2PNN7 141 aa3.75□□□□□ -1.81
VPS13D-201ENST00000011700 SPINK7P58062 85 aa3.75□□□□□ -1.81
VPS13D-201ENST00000011700 CRYBG3Q68DQ2 2970 aa3.75□□□□□ -1.81
VPS13D-201ENST00000011700 CASC10Q5T4H9 136 aa3.74□□□□□ -1.81
VPS13D-201ENST00000011700 KRTAP16-1A8MUX0 517 aa3.74□□□□□ -1.81
VPS13D-201ENST00000011700 Q5W150 140 aa3.73□□□□□ -1.81
VPS13D-201ENST00000011700 PRUNE2Q8WUY3 3088 aa3.73□□□□□ -1.81
VPS13D-201ENST00000011700 USP34Q70CQ2 3546 aa3.72□□□□□ -1.81
VPS13D-201ENST00000011700 NBEAQ8NFP9 2946 aa3.72□□□□□ -1.81
VPS13D-201ENST00000011700 DMXL2Q8TDJ6 3036 aa3.72□□□□□ -1.81
VPS13D-201ENST00000011700 SPATA8Q6RVD6 105 aa3.72□□□□□ -1.81
VPS13D-201ENST00000011700 H1FX-AS1Q4G0G2 97 aa3.71□□□□□ -1.81
VPS13D-201ENST00000011700 COL12A1Q99715 3063 aa3.71□□□□□ -1.82
VPS13D-201ENST00000011700 PANO1I0J062 215 aa3.71□□□□□ -1.82
VPS13D-201ENST00000011700 PP632Q6XCG6 107 aa3.7□□□□□ -1.82
VPS13D-201ENST00000011700 TGP01266 2768 aa3.7□□□□□ -1.82
VPS13D-201ENST00000011700 NOTCH2NLQ7Z3S9 236 aa3.69□□□□□ -1.82
VPS13D-201ENST00000011700 ANAPC11Q9NYG5 84 aa3.68□□□□□ -1.82
VPS13D-201ENST00000011700 ZANQ9Y493 2812 aa3.67□□□□□ -1.82
VPS13D-201ENST00000011700 DCHS2Q6V1P9 2916 aa3.67□□□□□ -1.82
VPS13D-201ENST00000011700 LAMA1P25391 3075 aa3.67□□□□□ -1.82
VPS13D-201ENST00000011700 LCE6AA0A183 80 aa3.65□□□□□ -1.82
VPS13D-201ENST00000011700 XIRP2A4UGR9 3374 aa3.65□□□□□ -1.83
VPS13D-201ENST00000011700 RANBP2P49792 3224 aaKnown RBP3.63□□□□□ -1.83
VPS13D-201ENST00000011700 MXRA5Q9NR99 2828 aa3.63□□□□□ -1.83
VPS13D-201ENST00000011700 KRTAP4-16G5E9R7 235 aaPredicted RBP3.63□□□□□ -1.83
VPS13D-201ENST00000011700 KRTAP26-1Q6PEX3 210 aa3.62□□□□□ -1.83
VPS13D-201ENST00000011700 SRRM2Q9UQ35 2752 aaKnown RBP3.62□□□□□ -1.83
VPS13D-201ENST00000011700 KRTAP29-1A8MX34 341 aaPredicted RBP3.61□□□□□ -1.83
VPS13D-201ENST00000011700 KRTAP25-1Q3LHN0 102 aa3.61□□□□□ -1.83
VPS13D-201ENST00000011700 KRTAP1-3Q8IUG1 177 aa3.6□□□□□ -1.83
VPS13D-201ENST00000011700 SMR3BP02814 79 aaPredicted RBP3.6□□□□□ -1.83
VPS13D-201ENST00000011700 BOD1L1Q8NFC6 3051 aa3.6□□□□□ -1.83
VPS13D-201ENST00000011700 TENM4Q6N022 2769 aa3.6□□□□□ -1.83
VPS13D-201ENST00000011700 Q5VSD8 79 aa3.59□□□□□ -1.83
VPS13D-201ENST00000011700 TNP1P09430 55 aa3.59□□□□□ -1.84
VPS13D-201ENST00000011700 KRTAP1-1Q07627 177 aa3.58□□□□□ -1.84
VPS13D-201ENST00000011700 PRAC1Q96KF2 57 aa3.58□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms