RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 EDN2P20800 178 aa2.86□□□□□ -1.95
LIG3-211ENST00000588713 FUSP35637 526 aaKnown RBP eCLIP2.86□□□□□ -1.95
LIG3-211ENST00000588713 COX6A2Q02221 97 aa2.86□□□□□ -1.95
LIG3-211ENST00000588713 LYPD5Q6UWN5 251 aa2.86□□□□□ -1.95
LIG3-211ENST00000588713 LINC01561Q8N1V8 128 aa2.86□□□□□ -1.95
LIG3-211ENST00000588713 LINC00337Q8N6G1 96 aa2.86□□□□□ -1.95
LIG3-211ENST00000588713 C11orf72Q8NBR9 251 aa2.86□□□□□ -1.95
LIG3-211ENST00000588713 SMIM11BQ8TCY0 68 aa2.86□□□□□ -1.95
LIG3-211ENST00000588713 COX7B2Q8TF08 81 aa2.86□□□□□ -1.95
LIG3-211ENST00000588713 DSCR8Q96T75 97 aa2.86□□□□□ -1.95
LIG3-211ENST00000588713 SND1-IT1Q9HBX3 110 aa2.86□□□□□ -1.95
LIG3-211ENST00000588713 ORMDL1Q9P0S3 153 aa2.86□□□□□ -1.95
LIG3-211ENST00000588713 FAT3Q8TDW7 4589 aa2.86□□□□□ -1.95
LIG3-211ENST00000588713 A0A087WVE0 104 aa2.85□□□□□ -1.95
LIG3-211ENST00000588713 IGHV3-73A0A0B4J1V6 119 aa2.85□□□□□ -1.95
LIG3-211ENST00000588713 LECT2O14960 151 aa2.85□□□□□ -1.95
LIG3-211ENST00000588713 RPL36AP83881 106 aaKnown RBP2.85□□□□□ -1.95
LIG3-211ENST00000588713 MIR7-3HGQ8N6C7 128 aa2.85□□□□□ -1.95
LIG3-211ENST00000588713 RPL36ALQ969Q0 106 aaKnown RBP2.85□□□□□ -1.95
LIG3-211ENST00000588713 Q9HAA7 133 aa2.85□□□□□ -1.95
LIG3-211ENST00000588713 TRAV7A0A075B6U4 112 aa2.84□□□□□ -1.95
LIG3-211ENST00000588713 IGHV3-38A0A0C4DH36 116 aa2.84□□□□□ -1.95
LIG3-211ENST00000588713 A0A0U1RQV1 116 aa2.84□□□□□ -1.95
LIG3-211ENST00000588713 TRBV6-4A0A1B0GX49 114 aa2.84□□□□□ -1.95
LIG3-211ENST00000588713 H3BQ85 93 aa2.84□□□□□ -1.95
LIG3-211ENST00000588713 NDUFC1O43677 76 aa2.84□□□□□ -1.95
LIG3-211ENST00000588713 PFN2P35080 140 aa2.84□□□□□ -1.95
LIG3-211ENST00000588713 CCL18P55774 89 aa2.84□□□□□ -1.95
LIG3-211ENST00000588713 KLKP1Q107X0 134 aa2.84□□□□□ -1.95
LIG3-211ENST00000588713 FHL2Q14192 279 aa2.84□□□□□ -1.95
LIG3-211ENST00000588713 SS18Q15532 418 aa2.84□□□□□ -1.95
LIG3-211ENST00000588713 HRCT1Q6UXD1 115 aa2.84□□□□□ -1.95
LIG3-211ENST00000588713 TMEM243Q9BU79 118 aa2.84□□□□□ -1.95
LIG3-211ENST00000588713 UBL5Q9BZL1 73 aa2.84□□□□□ -1.95
LIG3-211ENST00000588713 CDC42SE2Q9NRR3 84 aa2.84□□□□□ -1.95
LIG3-211ENST00000588713 PRO0628Q9UI54 55 aa2.84□□□□□ -1.95
LIG3-211ENST00000588713 LOC110117498A0A087WWA1 95 aa2.83□□□□□ -1.96
LIG3-211ENST00000588713 A0A0U1RRA0 63 aa2.83□□□□□ -1.96
LIG3-211ENST00000588713 KNCNA6PVL3 124 aa2.83□□□□□ -1.96
LIG3-211ENST00000588713 TMEM256-PLSCR3K7ERE1 68 aa2.83□□□□□ -1.96
LIG3-211ENST00000588713 NCR3O14931 201 aa2.83□□□□□ -1.96
LIG3-211ENST00000588713 UBE2L6O14933 153 aa2.83□□□□□ -1.96
LIG3-211ENST00000588713 DEFB4AO15263 64 aa2.83□□□□□ -1.96
LIG3-211ENST00000588713 DEFB131AP59861 70 aa2.83□□□□□ -1.96
LIG3-211ENST00000588713 C6orf223Q8N319 242 aa2.83□□□□□ -1.96
LIG3-211ENST00000588713 UBE2E2Q96LR5 201 aa2.83□□□□□ -1.96
LIG3-211ENST00000588713 MAP6D1Q9H9H5 199 aa2.83□□□□□ -1.96
LIG3-211ENST00000588713 A0A087WZ39 114 aa2.82□□□□□ -1.96
LIG3-211ENST00000588713 SMIM26A0A096LP01 95 aa2.82□□□□□ -1.96
LIG3-211ENST00000588713 H7BZZ5 65 aa2.82□□□□□ -1.96
LIG3-211ENST00000588713 XCL1P47992 114 aa2.82□□□□□ -1.96
LIG3-211ENST00000588713 LINC00158P58513 81 aa2.82□□□□□ -1.96
LIG3-211ENST00000588713 CXCL6P80162 114 aa2.82□□□□□ -1.96
LIG3-211ENST00000588713 C4orf26Q17RF5 130 aa2.82□□□□□ -1.96
LIG3-211ENST00000588713 C9orf129Q5T035 196 aaKnown RBP2.82□□□□□ -1.96
LIG3-211ENST00000588713 NTM-AS1Q6ZSK4 140 aa2.82□□□□□ -1.96
LIG3-211ENST00000588713 XCL2Q9UBD3 114 aa2.82□□□□□ -1.96
LIG3-211ENST00000588713 TRAV23DV6A0A075B6W5 121 aa2.81□□□□□ -1.96
LIG3-211ENST00000588713 IGHV3OR16-9A0A0B4J2B5 98 aa2.81□□□□□ -1.96
LIG3-211ENST00000588713 ERC2-IT1O76042 136 aa2.81□□□□□ -1.96
LIG3-211ENST00000588713 PDE6GP18545 87 aa2.81□□□□□ -1.96
LIG3-211ENST00000588713 Q8IZM0 81 aa2.81□□□□□ -1.96
LIG3-211ENST00000588713 C20orf197Q8N268 126 aa2.81□□□□□ -1.96
LIG3-211ENST00000588713 Q8N814 137 aa2.81□□□□□ -1.96
LIG3-211ENST00000588713 DYNLRB2Q8TF09 96 aa2.81□□□□□ -1.96
LIG3-211ENST00000588713 Q9UF83 564 aa2.81□□□□□ -1.96
LIG3-211ENST00000588713 TRGV1A0A0A0MS02 117 aa2.8□□□□□ -1.96
LIG3-211ENST00000588713 TRAV10A0A0B4J240 114 aa2.8□□□□□ -1.96
LIG3-211ENST00000588713 APOC4P55056 127 aa2.8□□□□□ -1.96
LIG3-211ENST00000588713 KRTAP10-1P60331 282 aa2.8□□□□□ -1.96
LIG3-211ENST00000588713 COX17Q14061 63 aa2.8□□□□□ -1.96
LIG3-211ENST00000588713 ENHOQ6UWT2 76 aa2.8□□□□□ -1.96
LIG3-211ENST00000588713 Q6ZQT0 140 aa2.8□□□□□ -1.96
LIG3-211ENST00000588713 Q6ZTC4 211 aa2.8□□□□□ -1.96
LIG3-211ENST00000588713 C16orf74Q96GX8 76 aa2.8□□□□□ -1.96
LIG3-211ENST00000588713 TOMM7Q9P0U1 55 aa2.8□□□□□ -1.96
LIG3-211ENST00000588713 TNXBP22105 4242 aa2.79□□□□□ -1.96
LIG3-211ENST00000588713 TRBV7-4A0A0J9YYF1 115 aa2.79□□□□□ -1.96
LIG3-211ENST00000588713 F8WDY8 70 aa2.79□□□□□ -1.96
LIG3-211ENST00000588713 HTN1P15515 57 aa2.79□□□□□ -1.96
LIG3-211ENST00000588713 FAM19A1Q7Z5A9 133 aa2.79□□□□□ -1.96
LIG3-211ENST00000588713 C1orf158Q8N1D5 194 aa2.79□□□□□ -1.96
LIG3-211ENST00000588713 TRBV6-8A0A0A6YYG3 113 aa2.78□□□□□ -1.96
LIG3-211ENST00000588713 F8WEM9 126 aa2.78□□□□□ -1.96
LIG3-211ENST00000588713 RPL35AP18077 110 aaKnown RBP2.78□□□□□ -1.96
LIG3-211ENST00000588713 LINC01547P58512 204 aaPredicted RBP2.78□□□□□ -1.96
LIG3-211ENST00000588713 ODF3L2Q3SX64 289 aa2.78□□□□□ -1.96
LIG3-211ENST00000588713 LINC00575Q6W349 94 aa2.78□□□□□ -1.96
LIG3-211ENST00000588713 Q6ZTI0 123 aa2.78□□□□□ -1.96
LIG3-211ENST00000588713 Q6ZVQ6 151 aa2.78□□□□□ -1.96
LIG3-211ENST00000588713 STHQ8IWL8 128 aa2.78□□□□□ -1.96
LIG3-211ENST00000588713 C11orf68Q9H3H3 251 aaKnown RBP2.78□□□□□ -1.96
LIG3-211ENST00000588713 DEFB131BA0A096LNP1 70 aa2.77□□□□□ -1.97
LIG3-211ENST00000588713 IGHV4-28A0A0C4DH34 117 aa2.77□□□□□ -1.97
LIG3-211ENST00000588713 LOC100131303A0A0U1RQF7 123 aa2.77□□□□□ -1.97
LIG3-211ENST00000588713 NBDYA0A0U1RRE5 68 aa2.77□□□□□ -1.97
LIG3-211ENST00000588713 LINC00959A0A1B0GUT2 108 aa2.77□□□□□ -1.97
LIG3-211ENST00000588713 CMC4P56277 68 aaPredicted RBP2.77□□□□□ -1.97
LIG3-211ENST00000588713 RBM3P98179 157 aaKnown RBP2.77□□□□□ -1.97
LIG3-211ENST00000588713 NREPQ16612 68 aa2.77□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 67 ms