RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 MRPL55Q7Z7F7 128 aaKnown RBP8.22□□□□□ -1.09
SHMT2-207ENST00000553837 KRTAP10-11P60412 298 aa8.21□□□□□ -1.09
SHMT2-207ENST00000553837 Q1T7F1 81 aa8.21□□□□□ -1.09
SHMT2-207ENST00000553837 Q6ZQY7 126 aa8.21□□□□□ -1.09
SHMT2-207ENST00000553837 BPY2O14599 106 aa8.21□□□□□ -1.1
SHMT2-207ENST00000553837 Q8NDZ9 215 aa8.21□□□□□ -1.1
SHMT2-207ENST00000553837 PKD1L1Q8TDX9 2849 aa8.2□□□□□ -1.1
SHMT2-207ENST00000553837 FUSP35637 526 aaKnown RBP eCLIP8.2□□□□□ -1.1
SHMT2-207ENST00000553837 LELP1Q5T871 98 aa8.2□□□□□ -1.1
SHMT2-207ENST00000553837 IGLV6-57P01721 117 aa8.19□□□□□ -1.1
SHMT2-207ENST00000553837 C10orf25Q5T742 122 aa8.19□□□□□ -1.1
SHMT2-207ENST00000553837 FBN1P35555 2871 aaKnown RBP8.19□□□□□ -1.1
SHMT2-207ENST00000553837 PRYO14603 147 aa8.18□□□□□ -1.1
SHMT2-207ENST00000553837 SCXQ7RTU7 201 aa8.18□□□□□ -1.1
SHMT2-207ENST00000553837 KLK12Q9UKR0 248 aa8.18□□□□□ -1.1
SHMT2-207ENST00000553837 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.17□□□□□ -1.1
SHMT2-207ENST00000553837 Q6ZTC4 211 aa8.17□□□□□ -1.1
SHMT2-207ENST00000553837 UNQ6190/PRO20217Q6UXQ8 127 aa8.17□□□□□ -1.1
SHMT2-207ENST00000553837 PRR34Q9NV39 138 aa8.17□□□□□ -1.1
SHMT2-207ENST00000553837 TENM3Q9P273 2699 aa8.16□□□□□ -1.1
SHMT2-207ENST00000553837 DIRC1Q969H9 104 aa8.14□□□□□ -1.11
SHMT2-207ENST00000553837 SPAG11BQ08648 103 aa8.14□□□□□ -1.11
SHMT2-207ENST00000553837 KRTAP24-1Q3LI83 254 aa8.14□□□□□ -1.11
SHMT2-207ENST00000553837 STAB1Q9NY15 2570 aa8.14□□□□□ -1.11
SHMT2-207ENST00000553837 DNAH3Q8TD57 4116 aa8.13□□□□□ -1.11
SHMT2-207ENST00000553837 hDV103S1A0JD37 113 aa8.13□□□□□ -1.11
SHMT2-207ENST00000553837 COX7BP24311 80 aa8.13□□□□□ -1.11
SHMT2-207ENST00000553837 WFDC10BQ8IUB3 73 aa8.12□□□□□ -1.11
SHMT2-207ENST00000553837 OCR1Q9BZK8 76 aa8.12□□□□□ -1.11
SHMT2-207ENST00000553837 A0A0J9YWU9 116 aa8.11□□□□□ -1.11
SHMT2-207ENST00000553837 KPRPQ5T749 579 aaPredicted RBP8.11□□□□□ -1.11
SHMT2-207ENST00000553837 KTN1-AS1Q86SY8 53 aa8.11□□□□□ -1.11
SHMT2-207ENST00000553837 IGKV4-1P06312 121 aa8.1□□□□□ -1.11
SHMT2-207ENST00000553837 Q6ZRP5 223 aa8.1□□□□□ -1.11
SHMT2-207ENST00000553837 ZNF73O43830 326 aaPredicted RBP8.1□□□□□ -1.11
SHMT2-207ENST00000553837 EGFEM1PQ0D2K5 195 aa8.1□□□□□ -1.11
SHMT2-207ENST00000553837 ELOF1P60002 83 aaKnown RBP8.08□□□□□ -1.12
SHMT2-207ENST00000553837 UBE2BP63146 152 aa8.08□□□□□ -1.12
SHMT2-207ENST00000553837 KRTAP26-1Q6PEX3 210 aa8.08□□□□□ -1.12
SHMT2-207ENST00000553837 C6orf48Q9UBA6 75 aa8.08□□□□□ -1.12
SHMT2-207ENST00000553837 C4orf48Q5BLP8 95 aa8.08□□□□□ -1.12
SHMT2-207ENST00000553837 Q8N9L7 120 aa8.08□□□□□ -1.12
SHMT2-207ENST00000553837 RBM12B-AS1Q9P1G2 102 aa8.07□□□□□ -1.12
SHMT2-207ENST00000553837 HIGD2AQ9BW72 106 aa8.07□□□□□ -1.12
SHMT2-207ENST00000553837 GVQW2A0A096LPI5 108 aaPredicted RBP8.06□□□□□ -1.12
SHMT2-207ENST00000553837 H3BNG1 76 aa8.06□□□□□ -1.12
SHMT2-207ENST00000553837 HIGD2BQ4VC39 106 aa8.05□□□□□ -1.12
SHMT2-207ENST00000553837 XAGE1AQ9HD64 81 aa8.05□□□□□ -1.12
SHMT2-207ENST00000553837 NDUFS5O43920 106 aa8.04□□□□□ -1.12
SHMT2-207ENST00000553837 TRAV22A0A0B4J277 110 aa8.04□□□□□ -1.12
SHMT2-207ENST00000553837 NOTCH1P46531 2555 aa8.03□□□□□ -1.12
SHMT2-207ENST00000553837 C15orf56Q8N910 161 aa8.03□□□□□ -1.12
SHMT2-207ENST00000553837 LINC00588Q9Y4M8 146 aa8.03□□□□□ -1.12
SHMT2-207ENST00000553837 C1orf64Q8NEQ6 169 aa8.02□□□□□ -1.13
SHMT2-207ENST00000553837 DEFB131BA0A096LNP1 70 aa8.01□□□□□ -1.13
SHMT2-207ENST00000553837 PRB2P02812 416 aaPredicted RBP8.01□□□□□ -1.13
SHMT2-207ENST00000553837 PSPHP1O15172 72 aa8□□□□□ -1.13
SHMT2-207ENST00000553837 SYCNQ0VAF6 134 aa8□□□□□ -1.13
SHMT2-207ENST00000553837 LINC00528Q8N1L1 170 aa8□□□□□ -1.13
SHMT2-207ENST00000553837 M0R378 163 aa8□□□□□ -1.13
SHMT2-207ENST00000553837 C11orf45Q8TAV5 145 aa8□□□□□ -1.13
SHMT2-207ENST00000553837 CAMK2N2Q96S95 79 aa8□□□□□ -1.13
SHMT2-207ENST00000553837 LCE6AA0A183 80 aa7.99□□□□□ -1.13
SHMT2-207ENST00000553837 UBE2AP49459 152 aa7.99□□□□□ -1.13
SHMT2-207ENST00000553837 CYP4F30PQ9H0H9 118 aa7.99□□□□□ -1.13
SHMT2-207ENST00000553837 FAM30AQ9NZY2 134 aa7.98□□□□□ -1.13
SHMT2-207ENST00000553837 A0A1B0GW54 56 aa7.98□□□□□ -1.13
SHMT2-207ENST00000553837 C3orf84H3BNL1 204 aa7.98□□□□□ -1.13
SHMT2-207ENST00000553837 VPREB1P12018 145 aa7.98□□□□□ -1.13
SHMT2-207ENST00000553837 PHF5AQ7RTV0 110 aaKnown RBP7.98□□□□□ -1.13
SHMT2-207ENST00000553837 LINC01556Q5JQF7 62 aa7.97□□□□□ -1.13
SHMT2-207ENST00000553837 SMIM29Q86T20 159 aa7.97□□□□□ -1.13
SHMT2-207ENST00000553837 NBEAL1Q6ZS30 2694 aa7.97□□□□□ -1.13
SHMT2-207ENST00000553837 IGKV2D-24A0A075B6R9 120 aa7.96□□□□□ -1.14
SHMT2-207ENST00000553837 COL6A5A8TX70 2615 aa7.96□□□□□ -1.14
SHMT2-207ENST00000553837 PSCAO43653 123 aa7.95□□□□□ -1.14
SHMT2-207ENST00000553837 ATP11AUNQ6ZP68 121 aa7.95□□□□□ -1.14
SHMT2-207ENST00000553837 HUWE1Q7Z6Z7 4374 aaKnown RBP7.95□□□□□ -1.14
SHMT2-207ENST00000553837 LRCOL1A6NCL2 159 aa7.95□□□□□ -1.14
SHMT2-207ENST00000553837 DNAH1Q9P2D7 4330 aa7.95□□□□□ -1.14
SHMT2-207ENST00000553837 MDFIQ99750 246 aa7.94□□□□□ -1.14
SHMT2-207ENST00000553837 DNHD1Q96M86 4753 aa7.94□□□□□ -1.14
SHMT2-207ENST00000553837 IGLV5-48A0A075B6I7 105 aa7.93□□□□□ -1.14
SHMT2-207ENST00000553837 ZCCHC13Q8WW36 166 aaKnown RBP7.93□□□□□ -1.14
SHMT2-207ENST00000553837 A8MUN3 132 aa7.93□□□□□ -1.14
SHMT2-207ENST00000553837 DNAH10OSP0CZ25 163 aa7.93□□□□□ -1.14
SHMT2-207ENST00000553837 Q5VV11 94 aa7.93□□□□□ -1.14
SHMT2-207ENST00000553837 ETDCA0A1B0GVM5 59 aa7.92□□□□□ -1.14
SHMT2-207ENST00000553837 CASC10Q5T4H9 136 aa7.92□□□□□ -1.14
SHMT2-207ENST00000553837 DEFB105AQ8NG35 78 aa7.91□□□□□ -1.14
SHMT2-207ENST00000553837 LIMD2Q9BT23 127 aa7.91□□□□□ -1.14
SHMT2-207ENST00000553837 K7EIL1 84 aa7.9□□□□□ -1.14
SHMT2-207ENST00000553837 Q8N377 158 aa7.9□□□□□ -1.14
SHMT2-207ENST00000553837 C16orf90A8MZG2 172 aa7.9□□□□□ -1.15
SHMT2-207ENST00000553837 NDUFB1O75438 58 aa7.9□□□□□ -1.15
SHMT2-207ENST00000553837 SERTAD4-AS1Q5TG53 156 aa7.88□□□□□ -1.15
SHMT2-207ENST00000553837 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.88□□□□□ -1.15
SHMT2-207ENST00000553837 A6NN06 94 aa7.88□□□□□ -1.15
SHMT2-207ENST00000553837 LYSTQ99698 3801 aa7.88□□□□□ -1.15
SHMT2-207ENST00000553837 KCNQ1DNQ9H478 68 aa7.87□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 141.2 ms