RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 PLXNC1O60486 1568 aa-0.39□□□□□ -2.47
HMGB1P28-201ENST00000507778 NWD1Q149M9 1564 aa-0.39□□□□□ -2.47
HMGB1P28-201ENST00000507778 PDE4DIPQ5VU43 2346 aa-0.39□□□□□ -2.47
HMGB1P28-201ENST00000507778 LAMA1P25391 3075 aa-0.39□□□□□ -2.47
HMGB1P28-201ENST00000507778 TRBV7-7A0A0K0K1E9 115 aa-0.39□□□□□ -2.47
HMGB1P28-201ENST00000507778 C7orf77A4D0Y5 90 aa-0.39□□□□□ -2.47
HMGB1P28-201ENST00000507778 NAP1L6A6NFF2 107 aa-0.39□□□□□ -2.47
HMGB1P28-201ENST00000507778 TMEM262E9PQX1 116 aa-0.39□□□□□ -2.47
HMGB1P28-201ENST00000507778 F6UZH7 168 aa-0.39□□□□□ -2.47
HMGB1P28-201ENST00000507778 COX6CP09669 75 aa-0.39□□□□□ -2.47
HMGB1P28-201ENST00000507778 SAA2P0DJI9 122 aaPredicted RBP-0.39□□□□□ -2.47
HMGB1P28-201ENST00000507778 S100A1P23297 94 aa-0.39□□□□□ -2.47
HMGB1P28-201ENST00000507778 GNG4P50150 75 aa-0.39□□□□□ -2.47
HMGB1P28-201ENST00000507778 PSMG4Q5JS54 123 aa-0.39□□□□□ -2.47
HMGB1P28-201ENST00000507778 SVBPQ8N300 66 aa-0.39□□□□□ -2.47
HMGB1P28-201ENST00000507778 TMEM203Q969S6 136 aa-0.39□□□□□ -2.47
HMGB1P28-201ENST00000507778 CMYA5Q8N3K9 4069 aa-0.39□□□□□ -2.47
HMGB1P28-201ENST00000507778 LAMA2P24043 3122 aaKnown RBP-0.39□□□□□ -2.47
HMGB1P28-201ENST00000507778 TJP1Q07157 1748 aa-0.39□□□□□ -2.47
HMGB1P28-201ENST00000507778 NIPBLQ6KC79 2804 aaeCLIP-0.39□□□□□ -2.47
HMGB1P28-201ENST00000507778 MAP3K1Q13233 1512 aa-0.39□□□□□ -2.47
HMGB1P28-201ENST00000507778 RANBP2P49792 3224 aaKnown RBP-0.4□□□□□ -2.47
HMGB1P28-201ENST00000507778 BIRC6Q9NR09 4857 aa-0.4□□□□□ -2.47
HMGB1P28-201ENST00000507778 DNHD1Q96M86 4753 aa-0.4□□□□□ -2.47
HMGB1P28-201ENST00000507778 HYDINQ4G0P3 5121 aa-0.4□□□□□ -2.47
HMGB1P28-201ENST00000507778 SPENQ96T58 3664 aaKnown RBP-0.4□□□□□ -2.47
HMGB1P28-201ENST00000507778 H3BQF6 201 aa-0.4□□□□□ -2.47
HMGB1P28-201ENST00000507778 SARNPP82979 210 aaKnown RBP-0.4□□□□□ -2.47
HMGB1P28-201ENST00000507778 KRTAP20-1Q3LI63 56 aa-0.4□□□□□ -2.47
HMGB1P28-201ENST00000507778 LRRC9Q6ZRR7 1453 aa-0.41□□□□□ -2.47
HMGB1P28-201ENST00000507778 MAGI2Q86UL8 1455 aa-0.41□□□□□ -2.47
HMGB1P28-201ENST00000507778 ANKRD36BQ8N2N9 1353 aa-0.41□□□□□ -2.47
HMGB1P28-201ENST00000507778 TMEM218A2RU14 115 aa-0.41□□□□□ -2.48
HMGB1P28-201ENST00000507778 NDUFA3O95167 84 aa-0.41□□□□□ -2.48
HMGB1P28-201ENST00000507778 PPP3R1P63098 170 aa-0.41□□□□□ -2.48
HMGB1P28-201ENST00000507778 DEFA5Q01523 94 aa-0.41□□□□□ -2.48
HMGB1P28-201ENST00000507778 PMCHL2Q9BQD1 86 aa-0.41□□□□□ -2.48
HMGB1P28-201ENST00000507778 CACFD1Q9UGQ2 172 aa-0.41□□□□□ -2.48
HMGB1P28-201ENST00000507778 CDKN2A-AS1Q9UH64 79 aa-0.41□□□□□ -2.48
HMGB1P28-201ENST00000507778 ACACAQ13085 2346 aa-0.41□□□□□ -2.48
HMGB1P28-201ENST00000507778 PKD1L2Q7Z442 2459 aa-0.41□□□□□ -2.48
HMGB1P28-201ENST00000507778 PEG3Q9GZU2 1588 aa-0.41□□□□□ -2.48
HMGB1P28-201ENST00000507778 BAZ1AQ9NRL2 1556 aaPredicted RBP-0.41□□□□□ -2.48
HMGB1P28-201ENST00000507778 COL12A1Q99715 3063 aa-0.41□□□□□ -2.48
HMGB1P28-201ENST00000507778 RAPGEF2Q9Y4G8 1499 aa-0.41□□□□□ -2.48
HMGB1P28-201ENST00000507778 PIK3C2BO00750 1634 aa-0.42□□□□□ -2.48
HMGB1P28-201ENST00000507778 CCDC168Q8NDH2 2452 aa-0.42□□□□□ -2.48
HMGB1P28-201ENST00000507778 PRDM15P57071 1507 aaPredicted RBP-0.42□□□□□ -2.48
HMGB1P28-201ENST00000507778 DNAH7Q8WXX0 4024 aa-0.42□□□□□ -2.48
HMGB1P28-201ENST00000507778 ITSN2Q9NZM3 1697 aa-0.42□□□□□ -2.48
HMGB1P28-201ENST00000507778 F8WEM9 126 aa-0.42□□□□□ -2.48
HMGB1P28-201ENST00000507778 H7BZZ5 65 aa-0.42□□□□□ -2.48
HMGB1P28-201ENST00000507778 CCL22O00626 93 aa-0.42□□□□□ -2.48
HMGB1P28-201ENST00000507778 GNGT2O14610 69 aa-0.42□□□□□ -2.48
HMGB1P28-201ENST00000507778 MT-ATP8P03928 68 aa-0.42□□□□□ -2.48
HMGB1P28-201ENST00000507778 MT1AP04731 61 aa-0.42□□□□□ -2.48
HMGB1P28-201ENST00000507778 UQCRHP07919 91 aa-0.42□□□□□ -2.48
HMGB1P28-201ENST00000507778 ARMS2P0C7Q2 107 aa-0.42□□□□□ -2.48
HMGB1P28-201ENST00000507778 IGLC2P0DOY2 106 aa-0.42□□□□□ -2.48
HMGB1P28-201ENST00000507778 IGLC3P0DOY3 106 aa-0.42□□□□□ -2.48
HMGB1P28-201ENST00000507778 DEFB110Q30KQ9 67 aa-0.42□□□□□ -2.48
HMGB1P28-201ENST00000507778 VAMP8Q9BV40 100 aa-0.42□□□□□ -2.48
HMGB1P28-201ENST00000507778 HIGD1BQ9P298 99 aa-0.42□□□□□ -2.48
HMGB1P28-201ENST00000507778 S4R3F8 94 aa-0.42□□□□□ -2.48
HMGB1P28-201ENST00000507778 LY75O60449 1722 aa-0.42□□□□□ -2.48
HMGB1P28-201ENST00000507778 NRAPQ86VF7 1730 aa-0.42□□□□□ -2.48
HMGB1P28-201ENST00000507778 FYCO1Q9BQS8 1478 aa-0.42□□□□□ -2.48
HMGB1P28-201ENST00000507778 ABCC2Q92887 1545 aa-0.43□□□□□ -2.48
HMGB1P28-201ENST00000507778 ANKRD11Q6UB99 2663 aaPredicted RBP-0.43□□□□□ -2.48
HMGB1P28-201ENST00000507778 CEP170BQ9Y4F5 1589 aaPredicted RBP-0.43□□□□□ -2.48
HMGB1P28-201ENST00000507778 CLIP1P30622 1438 aa-0.43□□□□□ -2.48
HMGB1P28-201ENST00000507778 ABCA13Q86UQ4 5058 aa-0.43□□□□□ -2.48
HMGB1P28-201ENST00000507778 TRBV25-1A0A075B6N4 114 aa-0.43□□□□□ -2.48
HMGB1P28-201ENST00000507778 LINC00587B1AMM8 73 aa-0.43□□□□□ -2.48
HMGB1P28-201ENST00000507778 CORTO00230 105 aa-0.43□□□□□ -2.48
HMGB1P28-201ENST00000507778 COX7BP24311 80 aa-0.43□□□□□ -2.48
HMGB1P28-201ENST00000507778 PMCHL1Q16048 86 aa-0.43□□□□□ -2.48
HMGB1P28-201ENST00000507778 ETDBQ3ZM63 59 aa-0.43□□□□□ -2.48
HMGB1P28-201ENST00000507778 LINC00846Q9NV44 126 aa-0.43□□□□□ -2.48
HMGB1P28-201ENST00000507778 PSENENQ9NZ42 101 aa-0.43□□□□□ -2.48
HMGB1P28-201ENST00000507778 AP4S1Q9Y587 144 aa-0.43□□□□□ -2.48
HMGB1P28-201ENST00000507778 ACACBO00763 2458 aa-0.43□□□□□ -2.48
HMGB1P28-201ENST00000507778 DYNC1H1Q14204 4646 aaKnown RBP-0.43□□□□□ -2.48
HMGB1P28-201ENST00000507778 WIZO95785 1651 aa-0.43□□□□□ -2.48
HMGB1P28-201ENST00000507778 KIF1AQ12756 1690 aa-0.43□□□□□ -2.48
HMGB1P28-201ENST00000507778 ZC3H13Q5T200 1668 aaKnown RBP-0.43□□□□□ -2.48
HMGB1P28-201ENST00000507778 WDR87Q6ZQQ6 2873 aa-0.43□□□□□ -2.48
HMGB1P28-201ENST00000507778 DNAH8Q96JB1 4490 aa-0.44□□□□□ -2.48
HMGB1P28-201ENST00000507778 TOGARAM1Q9Y4F4 1720 aa-0.44□□□□□ -2.48
HMGB1P28-201ENST00000507778 SRCAPQ6ZRS2 3230 aa-0.44□□□□□ -2.48
HMGB1P28-201ENST00000507778 LRRK2Q5S007 2527 aa-0.44□□□□□ -2.48
HMGB1P28-201ENST00000507778 DEPDC5O75140 1603 aa-0.44□□□□□ -2.48
HMGB1P28-201ENST00000507778 KIF14Q15058 1648 aa-0.44□□□□□ -2.48
HMGB1P28-201ENST00000507778 LEPROTL1O95214 131 aa-0.44□□□□□ -2.48
HMGB1P28-201ENST00000507778 S100A10P60903 97 aa-0.44□□□□□ -2.48
HMGB1P28-201ENST00000507778 GTF2H5Q6ZYL4 71 aa-0.44□□□□□ -2.48
HMGB1P28-201ENST00000507778 DEFB106AQ8N104 65 aa-0.44□□□□□ -2.48
HMGB1P28-201ENST00000507778 CGREF1Q99674 301 aa-0.44□□□□□ -2.48
HMGB1P28-201ENST00000507778 GNG8Q9UK08 70 aa-0.44□□□□□ -2.48
HMGB1P28-201ENST00000507778 ATP7BP35670 1465 aa-0.44□□□□□ -2.48
Retrieved 100 of 20,778 RNA–protein pairs in 75 ms