RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 PLXNC1O60486 1568 aa-0.39□□□□□ -2.47
HMGB1P28-201ENST00000507778 NWD1Q149M9 1564 aa-0.39□□□□□ -2.47
HMGB1P28-201ENST00000507778 PDE4DIPQ5VU43 2346 aa-0.39□□□□□ -2.47
HMGB1P28-201ENST00000507778 LAMA1P25391 3075 aa-0.39□□□□□ -2.47
HMGB1P28-201ENST00000507778 TRBV7-7A0A0K0K1E9 115 aa-0.39□□□□□ -2.47
HMGB1P28-201ENST00000507778 C7orf77A4D0Y5 90 aa-0.39□□□□□ -2.47
HMGB1P28-201ENST00000507778 NAP1L6A6NFF2 107 aa-0.39□□□□□ -2.47
HMGB1P28-201ENST00000507778 TMEM262E9PQX1 116 aa-0.39□□□□□ -2.47
HMGB1P28-201ENST00000507778 F6UZH7 168 aa-0.39□□□□□ -2.47
HMGB1P28-201ENST00000507778 COX6CP09669 75 aa-0.39□□□□□ -2.47
HMGB1P28-201ENST00000507778 SAA2P0DJI9 122 aaPredicted RBP-0.39□□□□□ -2.47
HMGB1P28-201ENST00000507778 S100A1P23297 94 aa-0.39□□□□□ -2.47
HMGB1P28-201ENST00000507778 GNG4P50150 75 aa-0.39□□□□□ -2.47
HMGB1P28-201ENST00000507778 PSMG4Q5JS54 123 aa-0.39□□□□□ -2.47
HMGB1P28-201ENST00000507778 SVBPQ8N300 66 aa-0.39□□□□□ -2.47
HMGB1P28-201ENST00000507778 TMEM203Q969S6 136 aa-0.39□□□□□ -2.47
HMGB1P28-201ENST00000507778 CMYA5Q8N3K9 4069 aa-0.39□□□□□ -2.47
HMGB1P28-201ENST00000507778 LAMA2P24043 3122 aaKnown RBP-0.39□□□□□ -2.47
HMGB1P28-201ENST00000507778 TJP1Q07157 1748 aa-0.39□□□□□ -2.47
HMGB1P28-201ENST00000507778 NIPBLQ6KC79 2804 aaeCLIP-0.39□□□□□ -2.47
HMGB1P28-201ENST00000507778 MAP3K1Q13233 1512 aa-0.39□□□□□ -2.47
HMGB1P28-201ENST00000507778 RANBP2P49792 3224 aaKnown RBP-0.4□□□□□ -2.47
HMGB1P28-201ENST00000507778 BIRC6Q9NR09 4857 aa-0.4□□□□□ -2.47
HMGB1P28-201ENST00000507778 DNHD1Q96M86 4753 aa-0.4□□□□□ -2.47
HMGB1P28-201ENST00000507778 HYDINQ4G0P3 5121 aa-0.4□□□□□ -2.47
HMGB1P28-201ENST00000507778 SPENQ96T58 3664 aaKnown RBP-0.4□□□□□ -2.47
HMGB1P28-201ENST00000507778 H3BQF6 201 aa-0.4□□□□□ -2.47
HMGB1P28-201ENST00000507778 SARNPP82979 210 aaKnown RBP-0.4□□□□□ -2.47
HMGB1P28-201ENST00000507778 KRTAP20-1Q3LI63 56 aa-0.4□□□□□ -2.47
HMGB1P28-201ENST00000507778 LRRC9Q6ZRR7 1453 aa-0.41□□□□□ -2.47
HMGB1P28-201ENST00000507778 MAGI2Q86UL8 1455 aa-0.41□□□□□ -2.47
HMGB1P28-201ENST00000507778 ANKRD36BQ8N2N9 1353 aa-0.41□□□□□ -2.47
HMGB1P28-201ENST00000507778 TMEM218A2RU14 115 aa-0.41□□□□□ -2.48
HMGB1P28-201ENST00000507778 NDUFA3O95167 84 aa-0.41□□□□□ -2.48
HMGB1P28-201ENST00000507778 PPP3R1P63098 170 aa-0.41□□□□□ -2.48
HMGB1P28-201ENST00000507778 DEFA5Q01523 94 aa-0.41□□□□□ -2.48
HMGB1P28-201ENST00000507778 PMCHL2Q9BQD1 86 aa-0.41□□□□□ -2.48
HMGB1P28-201ENST00000507778 CACFD1Q9UGQ2 172 aa-0.41□□□□□ -2.48
HMGB1P28-201ENST00000507778 CDKN2A-AS1Q9UH64 79 aa-0.41□□□□□ -2.48
HMGB1P28-201ENST00000507778 ACACAQ13085 2346 aa-0.41□□□□□ -2.48
HMGB1P28-201ENST00000507778 PKD1L2Q7Z442 2459 aa-0.41□□□□□ -2.48
HMGB1P28-201ENST00000507778 PEG3Q9GZU2 1588 aa-0.41□□□□□ -2.48
HMGB1P28-201ENST00000507778 BAZ1AQ9NRL2 1556 aaPredicted RBP-0.41□□□□□ -2.48
HMGB1P28-201ENST00000507778 COL12A1Q99715 3063 aa-0.41□□□□□ -2.48
HMGB1P28-201ENST00000507778 RAPGEF2Q9Y4G8 1499 aa-0.41□□□□□ -2.48
HMGB1P28-201ENST00000507778 PIK3C2BO00750 1634 aa-0.42□□□□□ -2.48
HMGB1P28-201ENST00000507778 CCDC168Q8NDH2 2452 aa-0.42□□□□□ -2.48
HMGB1P28-201ENST00000507778 PRDM15P57071 1507 aaPredicted RBP-0.42□□□□□ -2.48
HMGB1P28-201ENST00000507778 DNAH7Q8WXX0 4024 aa-0.42□□□□□ -2.48
HMGB1P28-201ENST00000507778 ITSN2Q9NZM3 1697 aa-0.42□□□□□ -2.48
HMGB1P28-201ENST00000507778 F8WEM9 126 aa-0.42□□□□□ -2.48
HMGB1P28-201ENST00000507778 H7BZZ5 65 aa-0.42□□□□□ -2.48
HMGB1P28-201ENST00000507778 CCL22O00626 93 aa-0.42□□□□□ -2.48
HMGB1P28-201ENST00000507778 GNGT2O14610 69 aa-0.42□□□□□ -2.48
HMGB1P28-201ENST00000507778 MT-ATP8P03928 68 aa-0.42□□□□□ -2.48
HMGB1P28-201ENST00000507778 MT1AP04731 61 aa-0.42□□□□□ -2.48
HMGB1P28-201ENST00000507778 UQCRHP07919 91 aa-0.42□□□□□ -2.48
HMGB1P28-201ENST00000507778 ARMS2P0C7Q2 107 aa-0.42□□□□□ -2.48
HMGB1P28-201ENST00000507778 IGLC2P0DOY2 106 aa-0.42□□□□□ -2.48
HMGB1P28-201ENST00000507778 IGLC3P0DOY3 106 aa-0.42□□□□□ -2.48
HMGB1P28-201ENST00000507778 DEFB110Q30KQ9 67 aa-0.42□□□□□ -2.48
HMGB1P28-201ENST00000507778 VAMP8Q9BV40 100 aa-0.42□□□□□ -2.48
HMGB1P28-201ENST00000507778 HIGD1BQ9P298 99 aa-0.42□□□□□ -2.48
HMGB1P28-201ENST00000507778 S4R3F8 94 aa-0.42□□□□□ -2.48
HMGB1P28-201ENST00000507778 LY75O60449 1722 aa-0.42□□□□□ -2.48
HMGB1P28-201ENST00000507778 NRAPQ86VF7 1730 aa-0.42□□□□□ -2.48
HMGB1P28-201ENST00000507778 FYCO1Q9BQS8 1478 aa-0.42□□□□□ -2.48
HMGB1P28-201ENST00000507778 ABCC2Q92887 1545 aa-0.43□□□□□ -2.48
HMGB1P28-201ENST00000507778 ANKRD11Q6UB99 2663 aaPredicted RBP-0.43□□□□□ -2.48
HMGB1P28-201ENST00000507778 CEP170BQ9Y4F5 1589 aaPredicted RBP-0.43□□□□□ -2.48
HMGB1P28-201ENST00000507778 CLIP1P30622 1438 aa-0.43□□□□□ -2.48
HMGB1P28-201ENST00000507778 ABCA13Q86UQ4 5058 aa-0.43□□□□□ -2.48
HMGB1P28-201ENST00000507778 TRBV25-1A0A075B6N4 114 aa-0.43□□□□□ -2.48
HMGB1P28-201ENST00000507778 LINC00587B1AMM8 73 aa-0.43□□□□□ -2.48
HMGB1P28-201ENST00000507778 CORTO00230 105 aa-0.43□□□□□ -2.48
HMGB1P28-201ENST00000507778 COX7BP24311 80 aa-0.43□□□□□ -2.48
HMGB1P28-201ENST00000507778 PMCHL1Q16048 86 aa-0.43□□□□□ -2.48
HMGB1P28-201ENST00000507778 ETDBQ3ZM63 59 aa-0.43□□□□□ -2.48
HMGB1P28-201ENST00000507778 LINC00846Q9NV44 126 aa-0.43□□□□□ -2.48
HMGB1P28-201ENST00000507778 PSENENQ9NZ42 101 aa-0.43□□□□□ -2.48
HMGB1P28-201ENST00000507778 AP4S1Q9Y587 144 aa-0.43□□□□□ -2.48
HMGB1P28-201ENST00000507778 ACACBO00763 2458 aa-0.43□□□□□ -2.48
HMGB1P28-201ENST00000507778 DYNC1H1Q14204 4646 aaKnown RBP-0.43□□□□□ -2.48
HMGB1P28-201ENST00000507778 WIZO95785 1651 aa-0.43□□□□□ -2.48
HMGB1P28-201ENST00000507778 KIF1AQ12756 1690 aa-0.43□□□□□ -2.48
HMGB1P28-201ENST00000507778 ZC3H13Q5T200 1668 aaKnown RBP-0.43□□□□□ -2.48
HMGB1P28-201ENST00000507778 WDR87Q6ZQQ6 2873 aa-0.43□□□□□ -2.48
HMGB1P28-201ENST00000507778 DNAH8Q96JB1 4490 aa-0.44□□□□□ -2.48
HMGB1P28-201ENST00000507778 TOGARAM1Q9Y4F4 1720 aa-0.44□□□□□ -2.48
HMGB1P28-201ENST00000507778 SRCAPQ6ZRS2 3230 aa-0.44□□□□□ -2.48
HMGB1P28-201ENST00000507778 LRRK2Q5S007 2527 aa-0.44□□□□□ -2.48
HMGB1P28-201ENST00000507778 DEPDC5O75140 1603 aa-0.44□□□□□ -2.48
HMGB1P28-201ENST00000507778 KIF14Q15058 1648 aa-0.44□□□□□ -2.48
HMGB1P28-201ENST00000507778 LEPROTL1O95214 131 aa-0.44□□□□□ -2.48
HMGB1P28-201ENST00000507778 S100A10P60903 97 aa-0.44□□□□□ -2.48
HMGB1P28-201ENST00000507778 GTF2H5Q6ZYL4 71 aa-0.44□□□□□ -2.48
HMGB1P28-201ENST00000507778 DEFB106AQ8N104 65 aa-0.44□□□□□ -2.48
HMGB1P28-201ENST00000507778 CGREF1Q99674 301 aa-0.44□□□□□ -2.48
HMGB1P28-201ENST00000507778 GNG8Q9UK08 70 aa-0.44□□□□□ -2.48
HMGB1P28-201ENST00000507778 ATP7BP35670 1465 aa-0.44□□□□□ -2.48
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms