RNA–Protein interactions for RNA: ENST00000503360.1

HMGB1P35-201, Transcript of high mobility group box 1 pseudogene 35, humanhuman

BASIC

Gene HMGB1P35, Length 598 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P35-201ENST00000503360 SPINK6Q6UWN8 80 aa0.53□□□□□ -2.32
HMGB1P35-201ENST00000503360 ENHOQ6UWT2 76 aa0.53□□□□□ -2.32
HMGB1P35-201ENST00000503360 SMIM5Q71RC9 77 aa0.53□□□□□ -2.32
HMGB1P35-201ENST00000503360 UBL5Q9BZL1 73 aa0.53□□□□□ -2.32
HMGB1P35-201ENST00000503360 URB1O60287 2271 aaKnown RBP0.53□□□□□ -2.33
HMGB1P35-201ENST00000503360 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP0.52□□□□□ -2.33
HMGB1P35-201ENST00000503360 SPINK4O60575 86 aa0.52□□□□□ -2.33
HMGB1P35-201ENST00000503360 MRPL33O75394 65 aaKnown RBP0.52□□□□□ -2.33
HMGB1P35-201ENST00000503360 CDKN2A-AS1Q9UH64 79 aa0.52□□□□□ -2.33
HMGB1P35-201ENST00000503360 APLNQ9ULZ1 77 aa0.52□□□□□ -2.33
HMGB1P35-201ENST00000503360 NOTCH1P46531 2555 aa0.52□□□□□ -2.33
HMGB1P35-201ENST00000503360 TJP1Q07157 1748 aa0.52□□□□□ -2.33
HMGB1P35-201ENST00000503360 MROH2AA6NES4 1674 aa0.51□□□□□ -2.33
HMGB1P35-201ENST00000503360 C3P01024 1663 aa0.51□□□□□ -2.33
HMGB1P35-201ENST00000503360 CACNA1EQ15878 2313 aa0.51□□□□□ -2.33
HMGB1P35-201ENST00000503360 C2CD3Q4AC94 2353 aa0.51□□□□□ -2.33
HMGB1P35-201ENST00000503360 DEFB105AQ8NG35 78 aa0.51□□□□□ -2.33
HMGB1P35-201ENST00000503360 TNRC6CQ9HCJ0 1690 aaKnown RBP0.51□□□□□ -2.33
HMGB1P35-201ENST00000503360 DEFB131BA0A096LNP1 70 aa0.5□□□□□ -2.33
HMGB1P35-201ENST00000503360 LINC01549A6NIU2 74 aa0.5□□□□□ -2.33
HMGB1P35-201ENST00000503360 KCNQ1DNQ9H478 68 aa0.5□□□□□ -2.33
HMGB1P35-201ENST00000503360 TTC28Q96AY4 2481 aa0.5□□□□□ -2.33
HMGB1P35-201ENST00000503360 CNOT1A5YKK6 2376 aaKnown RBP0.5□□□□□ -2.33
HMGB1P35-201ENST00000503360 PTPRZ1P23471 2315 aaPredicted RBP0.5□□□□□ -2.33
HMGB1P35-201ENST00000503360 PIEZO2Q9H5I5 2752 aa0.5□□□□□ -2.33
HMGB1P35-201ENST00000503360 SPTBN2O15020 2390 aa0.49□□□□□ -2.33
HMGB1P35-201ENST00000503360 F8P00451 2351 aa0.49□□□□□ -2.33
HMGB1P35-201ENST00000503360 ABCA10Q8WWZ4 1543 aa0.49□□□□□ -2.33
HMGB1P35-201ENST00000503360 POLQO75417 2590 aa0.49□□□□□ -2.33
HMGB1P35-201ENST00000503360 NDUFA3O95167 84 aa0.49□□□□□ -2.33
HMGB1P35-201ENST00000503360 DEFB109BQ30KR1 87 aa0.49□□□□□ -2.33
HMGB1P35-201ENST00000503360 H1FX-AS1Q4G0G2 97 aa0.49□□□□□ -2.33
HMGB1P35-201ENST00000503360 KRTAP19-3Q7Z4W3 81 aa0.49□□□□□ -2.33
HMGB1P35-201ENST00000503360 FXYD6Q9H0Q3 95 aa0.49□□□□□ -2.33
HMGB1P35-201ENST00000503360 PRO3102Q9H379 93 aa0.49□□□□□ -2.33
HMGB1P35-201ENST00000503360 DDX60LQ5H9U9 1706 aaKnown RBP0.49□□□□□ -2.33
HMGB1P35-201ENST00000503360 USF3Q68DE3 2245 aa0.49□□□□□ -2.33
HMGB1P35-201ENST00000503360 SYCP2Q9BX26 1530 aa0.48□□□□□ -2.33
HMGB1P35-201ENST00000503360 ETDCA0A1B0GVM5 59 aa0.48□□□□□ -2.33
HMGB1P35-201ENST00000503360 SPINK1P00995 79 aa0.48□□□□□ -2.33
HMGB1P35-201ENST00000503360 DEFB114Q30KQ6 69 aa0.48□□□□□ -2.33
HMGB1P35-201ENST00000503360 FBN2P35556 2912 aa0.48□□□□□ -2.33
HMGB1P35-201ENST00000503360 CLASP1Q7Z460 1538 aa0.48□□□□□ -2.33
HMGB1P35-201ENST00000503360 CROCC2H7BZ55 1655 aa0.47□□□□□ -2.33
HMGB1P35-201ENST00000503360 K7EMI3 77 aa0.47□□□□□ -2.33
HMGB1P35-201ENST00000503360 LINC00158P58513 81 aa0.47□□□□□ -2.33
HMGB1P35-201ENST00000503360 KLK9Q2XQG4 91 aa0.47□□□□□ -2.33
HMGB1P35-201ENST00000503360 WFDC13Q8IUB5 93 aa0.47□□□□□ -2.33
HMGB1P35-201ENST00000503360 PRXQ9BXM0 1461 aa0.47□□□□□ -2.33
HMGB1P35-201ENST00000503360 SYNE2Q8WXH0 6885 aaKnown RBP0.46□□□□□ -2.34
HMGB1P35-201ENST00000503360 PTPRQQ9UMZ3 2332 aa0.46□□□□□ -2.34
HMGB1P35-201ENST00000503360 PRH1P02810 166 aa0.46□□□□□ -2.34
HMGB1P35-201ENST00000503360 CRIP1P50238 77 aa0.46□□□□□ -2.34
HMGB1P35-201ENST00000503360 SERF2P84101 59 aa0.46□□□□□ -2.34
HMGB1P35-201ENST00000503360 KMT2DO14686 5537 aa0.46□□□□□ -2.34
HMGB1P35-201ENST00000503360 TNCP24821 2201 aa0.46□□□□□ -2.34
HMGB1P35-201ENST00000503360 C4AP0C0L4 1744 aa0.46□□□□□ -2.34
HMGB1P35-201ENST00000503360 C4BP0C0L5 1744 aa0.46□□□□□ -2.34
HMGB1P35-201ENST00000503360 EEA1Q15075 1411 aa0.46□□□□□ -2.34
HMGB1P35-201ENST00000503360 PKDREJQ9NTG1 2253 aa0.45□□□□□ -2.34
HMGB1P35-201ENST00000503360 CELSR2Q9HCU4 2923 aa0.45□□□□□ -2.34
HMGB1P35-201ENST00000503360 GVINP1Q7Z2Y8 2422 aa0.45□□□□□ -2.34
HMGB1P35-201ENST00000503360 KRTAP2-3P0C7H8 128 aa0.45□□□□□ -2.34
HMGB1P35-201ENST00000503360 LELP1Q5T871 98 aa0.45□□□□□ -2.34
HMGB1P35-201ENST00000503360 SMR3AQ99954 134 aa0.45□□□□□ -2.34
HMGB1P35-201ENST00000503360 KRTAP2-4Q9BYR9 128 aa0.45□□□□□ -2.34
HMGB1P35-201ENST00000503360 KRTAP2-1Q9BYU5 128 aa0.45□□□□□ -2.34
HMGB1P35-201ENST00000503360 ABCA12Q86UK0 2595 aa0.45□□□□□ -2.34
HMGB1P35-201ENST00000503360 FRAS1Q86XX4 4008 aa0.44□□□□□ -2.34
HMGB1P35-201ENST00000503360 BDP1A6H8Y1 2624 aa0.44□□□□□ -2.34
HMGB1P35-201ENST00000503360 SPTBN1Q01082 2364 aaKnown RBP0.44□□□□□ -2.34
HMGB1P35-201ENST00000503360 FCER1GP30273 86 aa0.44□□□□□ -2.34
HMGB1P35-201ENST00000503360 NCBP2-AS2Q69YL0 99 aa0.44□□□□□ -2.34
HMGB1P35-201ENST00000503360 NMES1Q9C002 83 aa0.44□□□□□ -2.34
HMGB1P35-201ENST00000503360 U3KQA8 63 aa0.44□□□□□ -2.34
HMGB1P35-201ENST00000503360 ZNF292O60281 2723 aa0.44□□□□□ -2.34
HMGB1P35-201ENST00000503360 NRXN3Q9Y4C0 1643 aa0.44□□□□□ -2.34
HMGB1P35-201ENST00000503360 PIEZO1Q92508 2521 aa0.44□□□□□ -2.34
HMGB1P35-201ENST00000503360 CSMD3Q7Z407 3707 aa0.44□□□□□ -2.34
HMGB1P35-201ENST00000503360 TPRP12270 2363 aaKnown RBP0.43□□□□□ -2.34
HMGB1P35-201ENST00000503360 FANCD2Q9BXW9 1451 aa0.43□□□□□ -2.34
HMGB1P35-201ENST00000503360 LYNX1G3V0Z9 82 aa0.43□□□□□ -2.34
HMGB1P35-201ENST00000503360 ANK2Q01484 3957 aa0.43□□□□□ -2.34
HMGB1P35-201ENST00000503360 APCP25054 2843 aa0.43□□□□□ -2.34
HMGB1P35-201ENST00000503360 ZNF469Q96JG9 3925 aaPredicted RBP0.43□□□□□ -2.34
HMGB1P35-201ENST00000503360 DEPDC5O75140 1603 aa0.42□□□□□ -2.34
HMGB1P35-201ENST00000503360 UGGT1Q9NYU2 1555 aa0.42□□□□□ -2.34
HMGB1P35-201ENST00000503360 CPS1P31327 1500 aa0.42□□□□□ -2.34
HMGB1P35-201ENST00000503360 CHD9Q3L8U1 2897 aa0.42□□□□□ -2.34
HMGB1P35-201ENST00000503360 AKAP6Q13023 2319 aa0.42□□□□□ -2.34
HMGB1P35-201ENST00000503360 ADCY10Q96PN6 1610 aa0.42□□□□□ -2.34
HMGB1P35-201ENST00000503360 TOGARAM1Q9Y4F4 1720 aa0.41□□□□□ -2.34
HMGB1P35-201ENST00000503360 H0YAA0 97 aa0.41□□□□□ -2.34
HMGB1P35-201ENST00000503360 M0R1W7 72 aa0.41□□□□□ -2.34
HMGB1P35-201ENST00000503360 A0A1B0GUL6 1792 aa0.41□□□□□ -2.34
HMGB1P35-201ENST00000503360 LOC730098B7Z3J9 87 aa0.4□□□□□ -2.35
HMGB1P35-201ENST00000503360 FSIP2Q5CZC0 6907 aa0.4□□□□□ -2.35
HMGB1P35-201ENST00000503360 ANKRD36CQ5JPF3 1778 aa0.4□□□□□ -2.35
HMGB1P35-201ENST00000503360 AGLP35573 1532 aa0.39□□□□□ -2.35
HMGB1P35-201ENST00000503360 ABCA5Q8WWZ7 1642 aa0.39□□□□□ -2.35
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms