RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 CRIPTQ9P021 101 aa2.19□□□□□ -2.06
CCDC88A-210ENST00000468534 CNFNQ9BYD5 112 aa2.18□□□□□ -2.06
CCDC88A-210ENST00000468534 TECTAO75443 2155 aa2.17□□□□□ -2.06
CCDC88A-210ENST00000468534 ANKRD17O75179 2603 aaKnown RBP2.17□□□□□ -2.06
CCDC88A-210ENST00000468534 LYNX1G3V0Z9 82 aa2.16□□□□□ -2.06
CCDC88A-210ENST00000468534 NDUFA1O15239 70 aa2.16□□□□□ -2.06
CCDC88A-210ENST00000468534 K7EQZ3 153 aa2.15□□□□□ -2.07
CCDC88A-210ENST00000468534 I3L2K1 104 aa2.14□□□□□ -2.07
CCDC88A-210ENST00000468534 DEFB103AP81534 67 aa2.14□□□□□ -2.07
CCDC88A-210ENST00000468534 COX6B2Q6YFQ2 88 aa2.14□□□□□ -2.07
CCDC88A-210ENST00000468534 MRPL34Q9BQ48 92 aaKnown RBP2.14□□□□□ -2.07
CCDC88A-210ENST00000468534 ICE1Q9Y2F5 2266 aa2.14□□□□□ -2.07
CCDC88A-210ENST00000468534 CADP27708 2225 aa2.13□□□□□ -2.07
CCDC88A-210ENST00000468534 LYNX1P0DP58 116 aa2.13□□□□□ -2.07
CCDC88A-210ENST00000468534 IAPPP10997 89 aa2.13□□□□□ -2.07
CCDC88A-210ENST00000468534 DEFB123Q8N688 67 aa2.13□□□□□ -2.07
CCDC88A-210ENST00000468534 TNRC6CQ9HCJ0 1690 aaKnown RBP2.12□□□□□ -2.07
CCDC88A-210ENST00000468534 PRB3Q04118 309 aaPredicted RBP2.12□□□□□ -2.07
CCDC88A-210ENST00000468534 KRTAP21-2Q3LI59 83 aa2.12□□□□□ -2.07
CCDC88A-210ENST00000468534 USMG5Q96IX5 58 aa2.12□□□□□ -2.07
CCDC88A-210ENST00000468534 TP53AIP1Q9HCN2 124 aa2.11□□□□□ -2.07
CCDC88A-210ENST00000468534 HIVEP2P31629 2446 aa2.11□□□□□ -2.07
CCDC88A-210ENST00000468534 ASXL3Q9C0F0 2248 aa2.1□□□□□ -2.07
CCDC88A-210ENST00000468534 PCOTHQ58A44 107 aa2.1□□□□□ -2.07
CCDC88A-210ENST00000468534 H0YAA0 97 aa2.09□□□□□ -2.07
CCDC88A-210ENST00000468534 K7EIL1 84 aa2.07□□□□□ -2.08
CCDC88A-210ENST00000468534 CCL22O00626 93 aa2.07□□□□□ -2.08
CCDC88A-210ENST00000468534 PIGYQ3MUY2 71 aa2.07□□□□□ -2.08
CCDC88A-210ENST00000468534 MINOS1Q5TGZ0 78 aa2.07□□□□□ -2.08
CCDC88A-210ENST00000468534 ARHGAP5-AS1Q96IT6 56 aa2.07□□□□□ -2.08
CCDC88A-210ENST00000468534 URB1O60287 2271 aaKnown RBP2.06□□□□□ -2.08
CCDC88A-210ENST00000468534 COX6A2Q02221 97 aa2.06□□□□□ -2.08
CCDC88A-210ENST00000468534 BRD3OSQ6XYD6 125 aa2.06□□□□□ -2.08
CCDC88A-210ENST00000468534 C6orf48Q9UBA6 75 aa2.06□□□□□ -2.08
CCDC88A-210ENST00000468534 KNTC1P50748 2209 aa2.05□□□□□ -2.08
CCDC88A-210ENST00000468534 C10orf95Q9H7T3 257 aa2.05□□□□□ -2.08
CCDC88A-210ENST00000468534 ASCC3Q8N3C0 2202 aaKnown RBP2.03□□□□□ -2.08
CCDC88A-210ENST00000468534 Q6ZSA8 131 aa2.03□□□□□ -2.08
CCDC88A-210ENST00000468534 GOLGA4Q13439 2230 aaKnown RBP2.02□□□□□ -2.09
CCDC88A-210ENST00000468534 LELP1Q5T871 98 aa2.02□□□□□ -2.09
CCDC88A-210ENST00000468534 RPS27LQ71UM5 84 aaKnown RBP2.02□□□□□ -2.09
CCDC88A-210ENST00000468534 CACNA1GO43497 2377 aa2.02□□□□□ -2.09
CCDC88A-210ENST00000468534 CACNA1BQ00975 2339 aa2.02□□□□□ -2.09
CCDC88A-210ENST00000468534 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP2.02□□□□□ -2.091e-6■■■■□ 25.3
CCDC88A-210ENST00000468534 CACNA1EQ15878 2313 aa2.01□□□□□ -2.09
CCDC88A-210ENST00000468534 POLR2KP53803 58 aaKnown RBP2□□□□□ -2.09
CCDC88A-210ENST00000468534 KRTAP12-1P59990 96 aa2□□□□□ -2.09
CCDC88A-210ENST00000468534 RPS27P42677 84 aaKnown RBP1.99□□□□□ -2.09
CCDC88A-210ENST00000468534 LINC01590Q5TEZ4 76 aa1.99□□□□□ -2.09
CCDC88A-210ENST00000468534 TTTY10Q9BZA0 68 aa1.99□□□□□ -2.09
CCDC88A-210ENST00000468534 KRTAP13-1Q8IUC0 172 aa1.98□□□□□ -2.09
CCDC88A-210ENST00000468534 IGLV5-48A0A075B6I7 105 aa1.97□□□□□ -2.09
CCDC88A-210ENST00000468534 H1FX-AS1Q4G0G2 97 aa1.97□□□□□ -2.09
CCDC88A-210ENST00000468534 WFDC13Q8IUB5 93 aa1.97□□□□□ -2.09
CCDC88A-210ENST00000468534 SORL1Q92673 2214 aa1.96□□□□□ -2.1
CCDC88A-210ENST00000468534 CNOT1A5YKK6 2376 aaKnown RBP1.95□□□□□ -2.1
CCDC88A-210ENST00000468534 DEFB130BP0DP73 79 aa1.95□□□□□ -2.1
CCDC88A-210ENST00000468534 DEFB130AP0DP74 79 aa1.95□□□□□ -2.1
CCDC88A-210ENST00000468534 RPL39P62891 51 aaKnown RBP1.95□□□□□ -2.1
CCDC88A-210ENST00000468534 WFDC10BQ8IUB3 73 aa1.95□□□□□ -2.1
CCDC88A-210ENST00000468534 AHCTF1Q8WYP5 2266 aa1.94□□□□□ -2.1
CCDC88A-210ENST00000468534 SPRR1AP35321 89 aa1.94□□□□□ -2.1
CCDC88A-210ENST00000468534 PRO0255Q9UI72 69 aa1.93□□□□□ -2.1
CCDC88A-210ENST00000468534 BPTFQ12830 3046 aa1.93□□□□□ -2.1
CCDC88A-210ENST00000468534 ALMS1Q8TCU4 4167 aa1.92□□□□□ -2.1
CCDC88A-210ENST00000468534 KRTAP6-3Q3LI67 103 aa1.92□□□□□ -2.1
CCDC88A-210ENST00000468534 RPL39LQ96EH5 51 aaKnown RBP1.92□□□□□ -2.1
CCDC88A-210ENST00000468534 FAM208BQ5VWN6 2430 aa1.91□□□□□ -2.1
CCDC88A-210ENST00000468534 Q5VSD8 79 aa1.91□□□□□ -2.1
CCDC88A-210ENST00000468534 APLNQ9ULZ1 77 aa1.91□□□□□ -2.1
CCDC88A-210ENST00000468534 FLG2Q5D862 2391 aaPredicted RBP1.9□□□□□ -2.11
CCDC88A-210ENST00000468534 KRTAP12-4P60329 112 aa1.9□□□□□ -2.11
CCDC88A-210ENST00000468534 KAAG1Q9UBP8 84 aa1.9□□□□□ -2.11
CCDC88A-210ENST00000468534 DEFB119Q8N690 84 aa1.89□□□□□ -2.11
CCDC88A-210ENST00000468534 JMJD1CQ15652 2540 aa1.88□□□□□ -2.11
CCDC88A-210ENST00000468534 KRTAP12-3P60328 96 aa1.88□□□□□ -2.11
CCDC88A-210ENST00000468534 WT1-ASQ06250 92 aa1.88□□□□□ -2.11
CCDC88A-210ENST00000468534 DEFB105AQ8NG35 78 aa1.88□□□□□ -2.11
CCDC88A-210ENST00000468534 BAHCC1Q9P281 2608 aa1.88□□□□□ -2.11
CCDC88A-210ENST00000468534 ZDBF2Q9HCK1 2354 aa1.88□□□□□ -2.11
CCDC88A-210ENST00000468534 OTOGLQ3ZCN5 2332 aa1.88□□□□□ -2.11
CCDC88A-210ENST00000468534 FBN1P35555 2871 aaKnown RBP1.87□□□□□ -2.11
CCDC88A-210ENST00000468534 MMP24-AS1A0A0U1RRL7 71 aa1.87□□□□□ -2.11
CCDC88A-210ENST00000468534 H3BSH0 61 aa1.87□□□□□ -2.11
CCDC88A-210ENST00000468534 DEFB131AP59861 70 aa1.87□□□□□ -2.11
CCDC88A-210ENST00000468534 SPINK9Q5DT21 86 aa1.87□□□□□ -2.11
CCDC88A-210ENST00000468534 CRCT1Q9UGL9 99 aa1.87□□□□□ -2.11
CCDC88A-210ENST00000468534 CNTRLQ7Z7A1 2325 aa1.85□□□□□ -2.11
CCDC88A-210ENST00000468534 SPRR1BP22528 89 aa1.85□□□□□ -2.11
CCDC88A-210ENST00000468534 LEAP2Q969E1 77 aa1.84□□□□□ -2.11
CCDC88A-210ENST00000468534 COL6A6A6NMZ7 2263 aa1.84□□□□□ -2.12
CCDC88A-210ENST00000468534 NAV3Q8IVL0 2385 aa1.84□□□□□ -2.12
CCDC88A-210ENST00000468534 H3BUA1 57 aa1.82□□□□□ -2.12
CCDC88A-210ENST00000468534 PRCDQ00LT1 54 aa1.82□□□□□ -2.12
CCDC88A-210ENST00000468534 DOPEY2Q9Y3R5 2298 aa1.8□□□□□ -2.12
CCDC88A-210ENST00000468534 PTPRQQ9UMZ3 2332 aa1.8□□□□□ -2.12
CCDC88A-210ENST00000468534 M0QY20 66 aa1.8□□□□□ -2.12
CCDC88A-210ENST00000468534 PIEZO2Q9H5I5 2752 aa1.8□□□□□ -2.12
CCDC88A-210ENST00000468534 KLK9Q2XQG4 91 aa1.79□□□□□ -2.12
CCDC88A-210ENST00000468534 KRTAP4-1Q9BYQ7 146 aa1.79□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 124.1 ms