RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 M0R2N4 97 aa2.02□□□□□ -2.09
VPS54-204ENST00000416400 ASXL3Q9C0F0 2248 aa2.02□□□□□ -2.09
VPS54-204ENST00000416400 BRWD1Q9NSI6 2320 aa2.01□□□□□ -2.09
VPS54-204ENST00000416400 DEFB131BA0A096LNP1 70 aa2.01□□□□□ -2.09
VPS54-204ENST00000416400 H0Y9P7 68 aa2.01□□□□□ -2.09
VPS54-204ENST00000416400 DEFB112Q30KQ8 113 aa2.01□□□□□ -2.09
VPS54-204ENST00000416400 C1orf137Q5JT78 98 aa2.01□□□□□ -2.09
VPS54-204ENST00000416400 COA5Q86WW8 74 aa2.01□□□□□ -2.09
VPS54-204ENST00000416400 NOP10Q9NPE3 64 aaKnown RBP2.01□□□□□ -2.09
VPS54-204ENST00000416400 PLAC8Q9NZF1 115 aa2.01□□□□□ -2.09
VPS54-204ENST00000416400 FAM186AA6NE01 2351 aa2.01□□□□□ -2.09
VPS54-204ENST00000416400 PLCE1Q9P212 2302 aa2.01□□□□□ -2.09
VPS54-204ENST00000416400 MALRD1Q5VYJ5 2156 aa2□□□□□ -2.09
VPS54-204ENST00000416400 ARHGAP32A7KAX9 2087 aa2□□□□□ -2.09
VPS54-204ENST00000416400 SPAG11AQ6PDA7 123 aa2□□□□□ -2.09
VPS54-204ENST00000416400 C9orf163Q8N9P6 203 aa2□□□□□ -2.09
VPS54-204ENST00000416400 XAGE1AQ9HD64 81 aa2□□□□□ -2.09
VPS54-204ENST00000416400 PRO0255Q9UI72 69 aa2□□□□□ -2.09
VPS54-204ENST00000416400 POLEQ07864 2286 aa2□□□□□ -2.09
VPS54-204ENST00000416400 MUC4Q99102 2169 aa1.99□□□□□ -2.09
VPS54-204ENST00000416400 A0A0G2JQZ4 141 aa1.99□□□□□ -2.09
VPS54-204ENST00000416400 KRTAP12-3P60328 96 aa1.99□□□□□ -2.09
VPS54-204ENST00000416400 PRO2289Q9P1D8 64 aa1.99□□□□□ -2.09
VPS54-204ENST00000416400 CACNA1GO43497 2377 aa1.98□□□□□ -2.09
VPS54-204ENST00000416400 B4DSR2 109 aa1.98□□□□□ -2.09
VPS54-204ENST00000416400 ANGP03950 147 aaKnown RBP1.98□□□□□ -2.09
VPS54-204ENST00000416400 ACYP2P14621 99 aa1.98□□□□□ -2.09
VPS54-204ENST00000416400 SPATA8Q6RVD6 105 aa1.98□□□□□ -2.09
VPS54-204ENST00000416400 UNQ6190/PRO20217Q6UXQ8 127 aa1.98□□□□□ -2.09
VPS54-204ENST00000416400 Q8NDZ9 215 aa1.98□□□□□ -2.09
VPS54-204ENST00000416400 C4orf3Q8WVX3 66 aa1.98□□□□□ -2.09
VPS54-204ENST00000416400 DNAJC13O75165 2243 aa1.98□□□□□ -2.09
VPS54-204ENST00000416400 AHCTF1Q8WYP5 2266 aa1.97□□□□□ -2.09
VPS54-204ENST00000416400 KIAA0100Q14667 2235 aaKnown RBP1.97□□□□□ -2.09
VPS54-204ENST00000416400 K7EQZ3 153 aa1.97□□□□□ -2.09
VPS54-204ENST00000416400 UQCR11O14957 56 aa1.97□□□□□ -2.09
VPS54-204ENST00000416400 LELP1Q5T871 98 aa1.97□□□□□ -2.09
VPS54-204ENST00000416400 DEFB105AQ8NG35 78 aa1.97□□□□□ -2.09
VPS54-204ENST00000416400 MED13Q9UHV7 2174 aa1.97□□□□□ -2.09
VPS54-204ENST00000416400 CACNA1EQ15878 2313 aa1.96□□□□□ -2.1
VPS54-204ENST00000416400 PRB1P04280 392 aa1.96□□□□□ -2.1
VPS54-204ENST00000416400 MSMBP08118 114 aa1.96□□□□□ -2.1
VPS54-204ENST00000416400 WFDC10BQ8IUB3 73 aa1.96□□□□□ -2.1
VPS54-204ENST00000416400 WFDC13Q8IUB5 93 aa1.96□□□□□ -2.1
VPS54-204ENST00000416400 CADP27708 2225 aa1.95□□□□□ -2.1
VPS54-204ENST00000416400 URB1O60287 2271 aaKnown RBP1.95□□□□□ -2.1
VPS54-204ENST00000416400 ABCA4P78363 2273 aa1.95□□□□□ -2.1
VPS54-204ENST00000416400 A0A1B0GU69 56 aa1.95□□□□□ -2.1
VPS54-204ENST00000416400 SPINK7P58062 85 aa1.95□□□□□ -2.1
VPS54-204ENST00000416400 MIR22HGQ0VDD5 57 aa1.95□□□□□ -2.1
VPS54-204ENST00000416400 Q6ZRX8 168 aa1.95□□□□□ -2.1
VPS54-204ENST00000416400 C6orf48Q9UBA6 75 aa1.95□□□□□ -2.1
VPS54-204ENST00000416400 DEFB130BP0DP73 79 aa1.94□□□□□ -2.1
VPS54-204ENST00000416400 DEFB130AP0DP74 79 aa1.94□□□□□ -2.1
VPS54-204ENST00000416400 SPRR1AP35321 89 aa1.94□□□□□ -2.1
VPS54-204ENST00000416400 RPL37AP61513 92 aaKnown RBP1.94□□□□□ -2.1
VPS54-204ENST00000416400 TPRXLQ17RH7 258 aa1.94□□□□□ -2.1
VPS54-204ENST00000416400 ICE1Q9Y2F5 2266 aa1.94□□□□□ -2.1
VPS54-204ENST00000416400 H3BNG1 76 aa1.93□□□□□ -2.1
VPS54-204ENST00000416400 IGLV1-51P01701 117 aa1.93□□□□□ -2.1
VPS54-204ENST00000416400 KRTAP5-7Q6L8G8 165 aa1.93□□□□□ -2.1
VPS54-204ENST00000416400 CACNA1BQ00975 2339 aa1.92□□□□□ -2.1
VPS54-204ENST00000416400 BAHCC1Q9P281 2608 aa1.92□□□□□ -2.1
VPS54-204ENST00000416400 A0A087WSZ3 146 aa1.92□□□□□ -2.1
VPS54-204ENST00000416400 SPART-AS1P0CW21 52 aa1.92□□□□□ -2.1
VPS54-204ENST00000416400 KRTAP12-1P59990 96 aa1.92□□□□□ -2.1
VPS54-204ENST00000416400 C1orf134Q5TEV5 83 aa1.92□□□□□ -2.1
VPS54-204ENST00000416400 CLPSL2Q6UWE3 100 aa1.92□□□□□ -2.1
VPS54-204ENST00000416400 LINC00472Q9H8W2 130 aa1.92□□□□□ -2.1
VPS54-204ENST00000416400 TPRP12270 2363 aaKnown RBP1.92□□□□□ -2.1
VPS54-204ENST00000416400 TRIOBPQ9H2D6 2365 aa1.92□□□□□ -2.1
VPS54-204ENST00000416400 ROMO1P60602 79 aa1.91□□□□□ -2.1
VPS54-204ENST00000416400 DEFB124Q8NES8 71 aa1.91□□□□□ -2.1
VPS54-204ENST00000416400 SPRR1BP22528 89 aa1.9□□□□□ -2.11
VPS54-204ENST00000416400 KRTAP12-4P60329 112 aa1.9□□□□□ -2.11
VPS54-204ENST00000416400 PCOTHQ58A44 107 aa1.9□□□□□ -2.11
VPS54-204ENST00000416400 CSAG1Q6PB30 78 aa1.9□□□□□ -2.11
VPS54-204ENST00000416400 DMAC1Q96GE9 116 aa1.9□□□□□ -2.11
VPS54-204ENST00000416400 CCL19Q99731 98 aa1.9□□□□□ -2.11
VPS54-204ENST00000416400 CEP250Q9BV73 2442 aa1.89□□□□□ -2.11
VPS54-204ENST00000416400 ROS1P08922 2347 aa1.89□□□□□ -2.11
VPS54-204ENST00000416400 SDK1Q7Z5N4 2213 aa1.89□□□□□ -2.11
VPS54-204ENST00000416400 KRTAP13-4Q3LI77 160 aa1.89□□□□□ -2.11
VPS54-204ENST00000416400 C10orf99Q6UWK7 81 aa1.89□□□□□ -2.11
VPS54-204ENST00000416400 MRPL34Q9BQ48 92 aaKnown RBP1.89□□□□□ -2.11
VPS54-204ENST00000416400 DOPEY2Q9Y3R5 2298 aa1.89□□□□□ -2.11
VPS54-204ENST00000416400 A0A0C4DFX4 3053 aa1.89□□□□□ -2.11
VPS54-204ENST00000416400 SRCAPQ6ZRS2 3230 aa1.89□□□□□ -2.11
VPS54-204ENST00000416400 MUC19Q7Z5P9 8384 aa1.88□□□□□ -2.11
VPS54-204ENST00000416400 CREBBPQ92793 2442 aa1.88□□□□□ -2.11
VPS54-204ENST00000416400 PTPRQQ9UMZ3 2332 aa1.88□□□□□ -2.11
VPS54-204ENST00000416400 A0A096LPF7 62 aa1.88□□□□□ -2.11
VPS54-204ENST00000416400 MMP24-AS1A0A0U1RRL7 71 aa1.88□□□□□ -2.11
VPS54-204ENST00000416400 J3QKU1 62 aa1.88□□□□□ -2.11
VPS54-204ENST00000416400 DEFB136Q30KP8 78 aa1.88□□□□□ -2.11
VPS54-204ENST00000416400 MAP1BP46821 2468 aaKnown RBP1.88□□□□□ -2.11
VPS54-204ENST00000416400 SPTBN1Q01082 2364 aaKnown RBP1.87□□□□□ -2.11
VPS54-204ENST00000416400 SPACA4Q8TDM5 124 aa1.87□□□□□ -2.11
VPS54-204ENST00000416400 PRO3102Q9H379 93 aa1.87□□□□□ -2.11
VPS54-204ENST00000416400 SORL1Q92673 2214 aa1.86□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms